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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 522 fasta sequence
[GAAGAAGAGAATAAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC-AGCTCTGTACAAATTACGCCTCTTTAAA-AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG-ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC-GGCGCGAACCGC-GGCCTCGCCACCG-GCT-TCCTCTCCGCCGCCGCCGCCG-GCGAGCTCCGCCCGGCCTGCTG-CTTCTCC-CCTTCC-TGCTGCC-T-CGTCGTCGC-CTTCTCC--GCCGCCGCCTTCTGCGTGCTTCCCCGGCGCTTGGT-CGTGCCTCCAGGAGAATCCGCGTGTAGTACCCCGTGCGCGGCGATCTCCGCCGGCNGACGAGCTCAGGAATGGAGAAGGNCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG]
[-] EMBL CA755725 [GAAGAAGAGAATAAACTTTGATT TTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTT AA ACAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGGCGC CTTCTCC GCCGCCGCCTTCT ]
[+] EMBL CB967167 [ AAAC TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCCGGGCGCGAACCGCGGGCCTCGCCACCGNGCTGTCCTCTCCGCCGCCGCCGCCGNGCGAGCTCCGCCCGGGCTGCTGNCTTCTCCGCCTTCCGTGCTGCC TCCGTCGTCGCGCTTCTCCGGGCCGCCGCCTTCTGCGTGCTTCCCCGGCGCTTGGT CGTGCCTCCAGGAGAATCCGCGTGTAGTACCCCGTGCGCGGCGATCTCCGCCGGCNGACGAGCTCAGGAATGGAGAAGGNCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTG ]
[+] EMBL CB965810 [ AAAC TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GGCGCCGACTTCTGC TGCTT CCCGGCGC TGGTCCGT CCTCCAGGAGAAT CGCGTGTAGT ]
[+] EMBL BI306642 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCCNT CGTCGTCGC CTTCTCC GCCGCCGCCTTC ]
[+] EMBL BU673811 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ]
[+] EMBL CB965065 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ]
[+] EMBL BI306100 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ]
[+] EMBL BI306409 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GTT TCCTTTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ]
[+] EMBL CB967491 [ AAACTTNGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAGAATAGAGTCAG ]
[+] EMBL BU673528 [ AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ]
[-] EMBL BU673839 [ AACTTTGATTTTATTAAATCAAATATACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACCAATTACGCCTCTTTAAA AAATAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCCATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTCT ]
[+] EMBL CB965263 [ TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACNAGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ]
[+] EMBL CB965186 [ TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ]
[-] EMBL BE230222 [ AAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTT AA ACAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGC CGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGGCGC CTTCTCC GCCGCCGCCTTCT ]
[-] EMBL BE230439 [ CGTGTAGTACCCCG GCGCGGCGATCTCCGCCGGC GACGAGCTCAGG ATGGAGAAGGCCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG]
consensusID : consensus_14531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACAGCTCTGTACAAATTACGCCTCTTTAAAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGCACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGGCCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGGGCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCGCACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTCAGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCAAGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGCCAGTTTGTGGCT]
[+] EMBL CB966394 [AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACAGCTCTGTACAAATTACGCCTCTTTAAAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGCACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGGCCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGGGCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCGCACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTCAGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCAAGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGCCAGTTTGTGGCT]
consensusID : consensus_14531#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence
[AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTACAACACACACACACACACACACACAACCTACACGACGACACGACACTTGACACGCACTCGACGACTTACGACGTCACGACACGT]
[+] EMBL CB965845 [AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTACAACACACACACACACACACACACAACCTACACGACGACACGACACTTGACACGCACTCGACGACTTACGACGTCACGACACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14531#0 GAAGAAGAGAATAAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 60
consensus_14531#1 ------------AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 48
consensus_14531#2 -------------AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 47
***********************************************
consensus_14531#0 TCA-TTTGA-TCGCTGTA-TGCCACA--GCTCTGTACAA-------ATTACGCCTCTTTA 108
consensus_14531#1 TCA-TTTGA-TCGCTGTA-TGCCACA--GCTCTGTACAA-------ATTACGCCTCTTTA 96
consensus_14531#2 TCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTA 107
*** ***** ******** ****** ********* * * *********
consensus_14531#0 AAAA-AAAAAAAAAACTAAGAG--AAGAATTGAAGCATCG-AGATAGAGTCAG-AAGGGA 163
consensus_14531#1 AAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGC 156
consensus_14531#2 CAACACACACACACACACACAC---ACAACCTACACGACGACACGACACTTGACACGCAC 164
** * * * * ** * * ** * * ** * * * * *
consensus_14531#0 ACG---ATGGTCTCGAAG--CAATTGATGCC-GTCG-AACT-CCGGCGC-GAACC-GCGG 213
consensus_14531#1 ACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGG 216
consensus_14531#2 TCG---ACGACTTACGACGTCACGACACGT------------------------------ 191
* * * * * ** * *
consensus_14531#0 CCTC-GCCACCGGCTTCCTCTCCGCCGC-----CGC-CGCCG-GCGA-GCTCCGCCC--G 262
consensus_14531#1 CCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGG 276
consensus_14531#2 ------------------------------------------------------------
consensus_14531#0 GCCTGCTGCTT--CTCCCCTTCCT--GCTGCCT-CGTCGT-CGCCT-TCTCCG-CCGCCG 314
consensus_14531#1 GCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCG 336
consensus_14531#2 ------------------------------------------------------------
consensus_14531#0 C-CTTCTGCGTGC-TTCCCCGGCGCTTGGTCGTGCCT--CCAGGAG--AATCCGCGTGT- 367
consensus_14531#1 CACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTC 396
consensus_14531#2 ------------------------------------------------------------
consensus_14531#0 AGTACCCC-GTGCGC-GGCG-ATCTCCG--CCGGCNGACG-AGCTCAGGA-ATGG----A 416
consensus_14531#1 AGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCA 456
consensus_14531#2 ------------------------------------------------------------
consensus_14531#0 GAAGGNCAGG-ATCTTGTCC-ATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCC 474
consensus_14531#1 AGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGC---CAGTTTGTGGC 513
consensus_14531#2 ------------------------------------------------------------
consensus_14531#0 TTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG 522
consensus_14531#1 T----------------------------------------------- 514
consensus_14531#2 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||