Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14536 cluster # 14536       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14536#0 length = 788 sequences # 2  
consensus_14536#1 length = 694 sequences # 9  
consensus_14536#2 length = 564 sequences # 6  

consensusID : consensus_14536#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 788
fasta sequence
                              [CTCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAGAAATCGAGAGCGCGGCGGCCGAAGATGCCGGCGACGCGANCGATCATCGGCGCCCTCCTGGGCCTCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCNAAGCAAGCCAACGAGCGGCGTTACTTTGATAGCNACGGAGGTATGGAAGAACTGGAACNTCCTCCTGGCCAAGCAGAAATACCCGGATTTATTGATAACCAGCAGATAGTCTCCATCTCCGCAGAAAGTAATAATTCTTGGATGATGATGATGATTAGCTAATTTTCATATTGGTTTNTCAGCCNCCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCNCAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAACTCGGCTCTGATGGTATACCTTCCCTGATGCAAANNAAATGTTTAGTACCAACGGTAGCGCTTTTACAAAGTTAGAATTTNTGCTTACCCATATGTTGTGAGGTTCTAGTGATGTGATATGTCNCCTTGCTCGTTCAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAA]

[+] EMBL C74345               [CTCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAGAAATCGAGAGCGCGGCGGCCGAAGATGCCGGCGACGCGANCGATCATCGGCGCCCTCCTGGGCCTCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCNAAGCAAGCCAACGAGCGGCGTTACTTTGATAGCNACGGAGGTATGGAAGAACTGGAACNTCCTCCTGGCCAAGCAGAAATACCCGGATTTATTGATAACCAGCAGATAGTCTCCATCTCCGCAGAAAGTAATAATTCTTGGATGATGATGATGATTAGCTAATTTTCATATTGGTTTN                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU172796             [                                                                                                                                                                                                                                                                                                                                                                             CAGCAGATAGTCTCCATCTCCGCAGACAGTTATAATTCTTGGATGATGATGATGATTAGCT ATTTTCATATTGGTTTGTCAGCCNCCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCNCAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAACTCGGCTCTGATGGTATACCTTCCCTGATGCAAANNAAATGTTTAGTACCAACGGTAGCGCTTTTACAAAGTTAGAATTTNTGCTTACCCATATGTTGTGAGGTTCTAGTGATGTGATATGTCNCCTTGCTCGTTCAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAA]


>consensus_14536#0 CTCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAGAAATCGAGAGCGCGGCGGC CGAAGATGCCGGCGACGCGANCGATCATCGGCGCCCTCCTGGGCCTCGGCACCCAGATGT ACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAA TGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGG ATCTCGACAAGATGCTTGAGCGTGCNAAGCAAGCCAACGAGCGGCGTTACTTTGATAGCN ACGGAGGTATGGAAGAACTGGAACNTCCTCCTGGCCAAGCAGAAATACCCGGATTTATTG ATAACCAGCAGATAGTCTCCATCTCCGCAGAAAGTAATAATTCTTGGATGATGATGATGA TTAGCTAATTTTCATATTGGTTTNTCAGCCNCCAGACTCTTTTTTTTCAGTTTGTATGGT CTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATT TCAACTGCGGTGCTGTAATAAACTGTTGTTTTCNCAAAGGATGTGATATTTTGCTTGTAT GAGAAACCAATTATCGAACTCGGCTCTGATGGTATACCTTCCCTGATGCAAANNAAATGT TTAGTACCAACGGTAGCGCTTTTACAAAGTTAGAATTTNTGCTTACCCATATGTTGTGAG GTTCTAGTGATGTGATATGTCNCCTTGCTCGTTCAAAAAAAAAAAAAAAAAAAAAAACAA AAAAAAAA



consensusID : consensus_14536#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 694
fasta sequence
                              [GTCCACTCCTCCCACCCATCTCGTCTTCGTCTCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAG-AAATCGAGAGCGCGGCGG--CCGAAGATG-CCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCT-CGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTC-TTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTA-TCAAC-ACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAACTCGGCTCTGATGGTATACCTTCCCTGATGCAAAGTCATTGTTTAGTACCAACGGTAGCGCTTTTACAAAGTTAGAATTTCTGCTTACCCATATGTTGTGAGGTTCTAGTGATGTGATATGTCACCTTGCTCGTTCATTCCTTTTCTTCAAAAAAAAAAA]

[+] EMBL AK059124             [GTCCACTCCTCCCACCCATCTCGTCTTCGTCTCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAG AAATCGAGAGCGCGGCGG  CCGAAGATG CCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCT CGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTC TTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTA TCAAC ACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAA                                                                                                                                                                            ]
[+] EMBL AU070703             [             ACCCATCTCGTCTTCGTCTCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAG AAATCGAGAGCGCGGCGG  CCGAAGATG CCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCT CGGCACCCAGATGTACNCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATNGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTC TTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTG                                                                                                                                                                                                                                                                               ]
[+] EMBL OSC02851A            [                          TCGTCTCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAG AAATCGAGNGCGCGGCGG  CCGAAGATG CCGGCGACG CGACGATCATCGGCGCCCTCCTGGGCCT CGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATNGGCCTGGGTGCGGTGTTCGTCAACCANCTNGTGAAGTNGGATGAGAAGCTCAAGGAGGATCTNGACAAGATGCTTGAGCGTTCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTG                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU058285             [                                CCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAG AAATCGAGAGCGCGGCNG  CCGAAGATG CCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCT CGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGG TTGTCAGCNACCAGACTCTTTTTTTTTCAGTTTGTATGGTCTGTAC NATGGGTTGGACCATCCATCT                                                                                                                                                                                                                                                                                ]
[+] EMBL AK119800             [                                            CCCCCACGCCGCCTCGAGAAAGAGGAG AAATCGAGAGCGCGGCGG  CCGAAGATG CCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCT CGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTC  TTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTA TCAAC ACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAA                                                                                                                                                                            ]
[+] EMBL AU068835             [                                                              nAAGAGGAGAAAANCGAGAGCGCGGCCGNCCCGAAGATGNCCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCTCCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTC TTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTA TCAAC ACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAACTCGGCTCTGATGGTATACCTTCCCTGATGCAAAGTCATTGTTTAGTACCAACGGTAGCGCTTTTACAAAGTTAGAATTTCTGCTTACCCATATGTTGTGAGGTTCTAGTGATGTGATATGTCACCTTGCTCGTTCATTCCTTTTCTTCAAAAAAAAAAA]
[+] EMBL AU181835             [                                                                   GGAG AAATCGAGAGCGCGGCGG  CCGAAGATG CCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCT CGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTC TTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTA TCAAC ACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAAC                                                                                                                                                                                                                       ]
[+] EMBL AU068836             [                                                                   GGAG AAATCGAGAGCGCGGCGG  CCGAAGATG CCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCT CGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATNGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTC TTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGTCGCCGTA TCA                                                                                                                                                                                                                                                                ]
[+] EMBL C73356               [                                                                    GAG AAATCGAGAGCGCGGCGG  CCGAAGATG CCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCT CGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTC TTTTTTTTCAGTTTGTATGGTCTGTACANATGGTTTTGACCATCCATCTTTAGTCGCCGTATTNAACAACCCG                                                                                                                                                                                                                                                        ]


>consensus_14536#1 GTCCACTCCTCCCACCCATCTCGTCTTCGTCTCCCCTCTCCTTCCCCCCACGCCGCCTCG AGAAAGAGGAGAAATCGAGAGCGCGGCGGCCGAAGATGCCGGCGACGCCGACGATCATCG GCGCCCTCCTGGGCCTCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACA TGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGC TGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGC AAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTG TCAGCCACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCC ATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACT GTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAACTCGGC TCTGATGGTATACCTTCCCTGATGCAAAGTCATTGTTTAGTACCAACGGTAGCGCTTTTA CAAAGTTAGAATTTCTGCTTACCCATATGTTGTGAGGTTCTAGTGATGTGATATGTCACC TTGCTCGTTCATTCCTTTTCTTCAAAAAAAAAAA



consensusID : consensus_14536#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 564
fasta sequence
                              [NCNTCCNATCTCGTTCTTTGTCCCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAGAAATCCGAGANCNCGGCGGCCGAAGAT-NCNGCGACNCCGACGATCATCGGCGCCCTCCTGGGCCTCGGCACCCAGAT-GTAC-TCCAACGCCCT-CCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTG-GTGGGAATGGGCCTGGGTGCG-GTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACA-CATGGTTTGGACCATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCNATTATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C97970               [NCNTCCNATCTCGTTCTTTGTCCCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGGAGAAATCCGAGANCNCGGCGGCCGAAGAT NCNGCGACNCCGACGATCATCGGCGCCCTCCTGGGCCTCGGCACCCAGAT GTAC TCCAACGCCCTCCCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTG GTGGGAATGGGCCTGGGTGCG GTGTNCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACA CATGGTTTGGACCATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCNATTNTCGAAAAAAAAAAAAA                            ]
[+] EMBL AU163670             [                                              CCTCGAGAAAGAGGAGAAAT CGAGAGCNCGGCGGCCGAAGATGCCGGCGACGCCGACGATCATCGGCGCCCTCCTGGGCCTCGGCACCCAGAT GTAC TCCAACGCCCT CCGCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATGTG GTGGGAATGGGCCTGGGTGCG GTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACA CATGGTTTGGACCATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAAAAAAAAAAAAA                            ]
[+] EMBL AU091389             [                                                                                                                   CCCTCCTGGGCCTCGNCACCCAGAT GTACTTCCAACGCCCT CCNCAAGCTCCCCTACATGCGCCATCCCTGGGAGCATNTG GTGGGAATGGGCCTGGGTGCG GTGTTCGTCAACCAGCTGGTGAAGTGGGATGAGAAGCTCAAGGNGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCNCCAGACTCTTTTTTTTCNGTTTGTNTGGTCTGTACN CATGGTTTGGACCATCCATNTGTAGTCGCCGTNTCAACNCCCGGCTCGCAATTTCAACTGCGGTGCTGTNATAAACTGTTGTTTTCNCAAAGGATGTGATATTTTGCTTGTNTGNGNNNCNNNTTTTNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI810409             [                                                                                                                                   CACCCAGATGGTAC TCC ACGCCCT CCGCAAGCTCCCCTACATGCGCCATCCCTGGGA CATGTGCGTGGGAATGGGCCTGGGTGCGTGTGTTCGTCAACCAGCT GTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCCAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCCCCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACCCTGGTTTGGACCATCCATCTGTAGTCGCCGTATC ACACCCGGCTCGC ATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACCAAGGATGTGATATTTTGCTTGTATGAGAAACCCATTATCGAAAAAAAAAA                               ]
[+] EMBL AU070922             [                                                                                                                                                                                                                                                                                        GCTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACA CATGGTTTGGACCATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACC                                                 ]
[+] EMBL AU162597             [                                                                                                                                                                                                                                                                                         CTTGAGCGTGCAAAGCAAGCCAACGAGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACA CATGGTTTGGACCATCCATCTGTAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA         ]


>consensus_14536#2 NCNTCCNATCTCGTTCTTTGTCCCCCCTCTCCTTCCCCCCACGCCGCCTCGAGAAAGAGG AGAAATCCGAGANCNCGGCGGCCGAAGATNCNGCGACNCCGACGATCATCGGCGCCCTCC TGGGCCTCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTACATGCGCCATC CCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAGCTGGTGAAGT GGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAGCAAGCCAACG AGCGGCGTTACTTTGATGATGATGATGATTAGCTATTTTCATATTGGTTTGTCAGCCACC AGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTGTAGT CGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGTTTTC ACAAAGGATGTGATATTTTGCTTGTATGAGAAACCNATTATCGAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14536#0      ------------------------------CTCCCCTCTCCTTCCCCCCACGCCGCCTCG 30
consensus_14536#1      GTCCACTCCTCCCACCCATCTCGTCTTCGTCTCCCCTCTCCTTCCCCCCACGCCGCCTCG 60
consensus_14536#2      ---------NCNTCCNATCTCGTTCTTTGTCCCCCCTCTCCTTCCCCCCACGCCGCCTCG 51
                                                     * ****************************

consensus_14536#0      AGAAAGAGGAGAAATC-GAGAGCGCGGCGGCCGAAGATGCCGGCGACGCGANCGATCATC 89
consensus_14536#1      AGAAAGAGGAGAAATC-GAGAGCGCGGCGGCCGAAGATGCCGGCGACGCCGACGATCATC 119
consensus_14536#2      AGAAAGAGGAGAAATCCGAGANCNCGGCGGCCGAAGATNCNG-CGACNCCGACGATCATC 110
                       **************** **** * ************** * * **** *   ********

consensus_14536#0      GGCGCCCTCCTGGGCCTCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTAC 149
consensus_14536#1      GGCGCCCTCCTGGGCCTCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTAC 179
consensus_14536#2      GGCGCCCTCCTGGGCCTCGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCCTAC 170
                       ************************************************************

consensus_14536#0      ATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAG 209
consensus_14536#1      ATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAG 239
consensus_14536#2      ATGCGCCATCCCTGGGAGCATGTGGTGGGAATGGGCCTGGGTGCGGTGTTCGTCAACCAG 230
                       ************************************************************

consensus_14536#0      CTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCNAAG 269
consensus_14536#1      CTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAG 299
consensus_14536#2      CTGGTGAAGTGGGATGAGAAGCTCAAGGAGGATCTCGACAAGATGCTTGAGCGTGCAAAG 290
                       ******************************************************** ***

consensus_14536#0      CAAGCCAACGAGCGGCGTTACTTTGATAGCNACGGAGGTATGGAAGAACTGGAACNTCCT 329
consensus_14536#1      CAAGCCAACGAGCGGCGTTACTTTGAT--------------------------------- 326
consensus_14536#2      CAAGCCAACGAGCGGCGTTACTTTGAT--------------------------------- 317
                       ***************************                                 

consensus_14536#0      CCTGGCCAAGCAGAAATACCCGGATTTATTGATAACCAGCAGATAGTCTCCATCTCCGCA 389
consensus_14536#1      ------------------------------------------------------------
consensus_14536#2      ------------------------------------------------------------
                                                                                   

consensus_14536#0      GAAAGTAATAATTCTTGGATGATGATGATGATTAGCTAATTTTCATATTGGTTTNTCAGC 449
consensus_14536#1      --------------------GATGATGATGATTAGCTA-TTTTCATATTGGTTTGTCAGC 365
consensus_14536#2      --------------------GATGATGATGATTAGCTA-TTTTCATATTGGTTTGTCAGC 356
                                           ****************** *************** *****

consensus_14536#0      CNCCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTG 509
consensus_14536#1      CACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTG 425
consensus_14536#2      CACCAGACTCTTTTTTTTCAGTTTGTATGGTCTGTACACATGGTTTGGACCATCCATCTG 416
                       * **********************************************************

consensus_14536#0      TAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGT 569
consensus_14536#1      TAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGT 485
consensus_14536#2      TAGTCGCCGTATCAACACCCGGCTCGCAATTTCAACTGCGGTGCTGTAATAAACTGTTGT 476
                       ************************************************************

consensus_14536#0      TTTCNCAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAACTCGGCTCTGA 629
consensus_14536#1      TTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCAATTATCGAACTCGGCTCTGA 545
consensus_14536#2      TTTCACAAAGGATGTGATATTTTGCTTGTATGAGAAACCNATTATCGAAAAAAAAAAAAA 536
                       **** ********************************** *********          *

consensus_14536#0      TGGTATACCTTCCCTGATGCAAANNAAATGTTTAGTACCAACGGTAGCGCTTTTACAAAG 689
consensus_14536#1      TGGTATACCTTCCCTGATGCAAAGTCATTGTTTAGTACCAACGGTAGCGCTTTTACAAAG 605
consensus_14536#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------- 564
                           * *         *   ***   *                                 

consensus_14536#0      TTAGAATTTNTGCTTACCCATATGTTGTGAGGTTCTAGTGATGTGATATGTCNCCTTGCT 749
consensus_14536#1      TTAGAATTTCTGCTTACCCATATGTTGTGAGGTTCTAGTGATGTGATATGTCACCTTGCT 665
consensus_14536#2      ------------------------------------------------------------
                                                                                   

consensus_14536#0      CGTTCAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAA 788
consensus_14536#1      CGTTCATTCCTTTTCTTCAAAAAAAAAAA---------- 694
consensus_14536#2      ---------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)