These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1392 fasta sequence [TCTTCCTACCGTGCGTGAGCCGTCCCCAGTACCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAG-ATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAG-CAGAGTTGCTGGTTTGGATAACCAAGGGAT-TGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACAAAACATATCGCTTTAGCAGTCAATGAAGAACTTACCCTGCATACGAGATTGATTGATGACTTGGAAGATCATGTTGATGTTACAAACTCGCGTCTTCAGCGTGTGCAAAAGAGGCTTGCAATTCTGAACAAGCGCACCAAAGGTGGCTGCTCAT-GCATGTGCCTGCTGCTATCTGTCGTCGCAATAGTGATCCTTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCA-TGACGTTTGTTCAACGCATCACTTCTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCA-TGGTTTTCATCTCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTGTACGTCATATGAGGCCCTGGCATATATGCCCAACAATATGTCTGAGACTACCACTCACGTGGAATTTGTTGGATTGCAATGAGAAGTATATATATGTTTTTGTGTGTGGAGATGTAACTGCTGTAGCATTGTCAATCCTTGGCATGTGCATTCAGAAAGTGTGTGCGTTCAGATAGGATTTCATTTTTCTGTGATCGGTTGCTGTCGATATGTACAAGCTCAATGTCAGCCACTGGCA-CAAAATATGTGAAAAATTATAGATACGGCGAT-GTAATGGATTTTGCTTATTTGACAAAAA] [+] EMBL AK072643 [TCTTCCTACCGTGCGTGAGCCGTCCCCAGTACCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAG ATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAG CAGAGTTGCTGGTTTGGATAACCAAGGGAT TGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACAAAACATATCGCTTTAGCAGTCAATGAAGAACTTACCCTGCATACGAGATTGATTGATGACTTGGAAGATCATGTTGATGTTACAAACTCGCGTCTTCAGCGTGTGCAAAAGAGGCTTGCAATTCTGAACAAGCGCACCAAAGGTGGCTGCTCAT GCATGTGCCTGCTGCTATCTGTCGTCGCAATAGTGATCCTTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCA TGACGTTTGTTCAACGCATCACTTCTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCA TGGTTTTCATCTCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTGTACGTCATATGAGGCCCTGGCATATATGCCCAACAATATGTCTGAGACTACCACTCACGTGGAATTTGTTGGATTGCAATGAGAAGTATATATATGTTT ] [+] EMBL CF309050 [ TGAGCCGTCCCCAGTACCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAATAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAG ATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGCAACAAGTTTTAACATG ] [+] EMBL BE040630 [ tgCCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTGCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAG ATTCCTCCGAAGATACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAG ACAAGAAGGCAG TGATGA ATGAG CAGAGTTG TGGTTTGGAT ACCAAGGGAT TG TGGGCTTCAGAGGC AATTATGAAAGAACAAGATGAAGGTC TGGGAAGCTGGAAAAGACAG NCTGGGTACAAAGCATATCG TTTAGCAGCCATTG AGAA TTACCCTCGAT CCCGA TGGTTGATG C TGGGAGA CATG TGGTGCAACA ] [+] EMBL CB684987 [ ACTCCCTTACTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAG ATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAG CAGAGTTGCTGGTTTGGATAACCAAGGGAT TGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGT ] [+] EMBL CB630538 [ ACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGACAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAG ATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAG CAGAGTTGCTGGTTTGGATAACCAAGGGAT TGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACAAAACATATCGCTTTAGCAGTCAATGAAGAACTTACCCTGCATACGAGATTGATTGATGACTTGGAAGATCATGTTGATGTTACAAACT ] [+] EMBL CF312365 [ GTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAGTATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAGCCAGAGTTGCTGGTTTGGATAACCAAGGGATATGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACAA ] [-] EMBL CB630539 [ AGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAG CAGAGTTGCTGGTTTGGATAACCAAGGGAT TGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACAAAACATATCGCTTTAGCAGTCAATGAAGAACTTACCCTGCATACGAGATTGATTGATGACTTGGAAGATCATGTTGATGTTACAAACTCGCGTCTTCAGCGTGTGCAAAAGAGGCTTGCAATTCTGAACAAGCGCACCAAAGGTGGCTGCTCAT GCATGTGCCTGCTGCTATCTGTCGTCGCAATAGTGATCCTTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCA TGACGTTTGTTCAACGCATCACTTCTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCA TGGTTTTCATCTCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTGTACGTCATATGAGGCCCTGGCATATATGCCCAACA ATGTCTGAGACTACCACTCACGTGGAATTTGTTGGATTGCAATGAGAAGTATATATATGTTTTTGTGTGTGGCGATGTAACTGCTGTAGCATTGTCAATCCTTGGCATGTGCATTCAGAAAGTGTGTGCGTTCAGATAGGATTTCATTTTTCTGTGATCGGTTGCTGTCGATATGTACAAGCTCAATGTCAGCCACTGGCA CAAAATATGTGAAAAATTATAGATACGGCGAT GTAATGGATTTTGC ] [+] EMBL BI798744 [ atTGATATGAC CAGA TTGCTGG TTGGAT ACCAA GGAT TG TGCCCTTCAGA GCCAATTATGAAAGAAC AGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACCAAACATATCGCTTTAGCAGTC ATGAAGAACTTACCCTGCATACGAGATTGATTGATGACTTGGAAGATCATGTTGATGTTACCAACTCGCGTCTTCAGCGTGTGCCAAAGAGGCTTGCCATTCTGAACCAGCGCACCCAAGGTGGCTGCTCAT GCATGTGCCTGCTGCTATCTGTCGTCGCCATAGTGATCCTTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCACTGACGTTTGTTCAACGCATCACTTCTGCGCTACTCATCCAAATGTGCAGCCTTTTAAAGATGTACCACTGGTTTTCATCTCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTGTACGTCATATGAGGCCCTGGCATATATGCCC AC ATATGTCTGAGACTACCACTCACGTGGAATTTGTTGGATT CCATGAGAAGTATATATATGTTTTTGTGaaaaaa ] [+] EMBL AU173375 [ GAGATTGATTGATGACTTGGAAGATCATGTTGATGTTACAAACTCGCGTNTTCAGCGTGTGCAAAANAGGCTTGCAATTNTGAACAAGCGCACCAAAGGTGGCTGCTCAT GCATGTGCCTGCTGCTATCTGTCGTCGCAATAGTGATCCNTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCA TGACGTTTGTTCAACGCATCACTTTTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCA TGGTTTTCATCTCGGCTTTGTTNTCCTGGGTGGAATGGTTTTATCAGTGTGTGTACGTCATATGAGGCCCTGGCATATATGCCCAACAATATGTNTGAGACTACCACTCACGTGGAATTTGTTGGATTGCAATGAGAAGTATATATATGTTTTTGTGTGaaaaaaa ] [+] EMBL BI812537 [ GCTCATGGCATGTGCCTGCTGCTATC GTCGTCCCAATAGTGATCCTT CTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCACTGACGTTTGTTCAACGCATCACTTCTGCGCTACTCATCCAAATGTGCAGCCTTTTAAAGATGTACCACTGGTTTTCATCTCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTGTACGTCATATGAGGCCCTGGCATATATGCCCAACAATATGTCTGAGACTACCACTCACGTGGAATTTGTTGGATTGCAATGAGAAGTATATATATGTTTTTGTGTGTGGAGATGTAACTGCTGTAGCATTGTCAATCCTTGGCATGTGCATTCAGAAAGTGTGTGCGTTCAGATAGGATTTTATTTTTCTGTGATCGGTTGCTGTCGATATGTACAAGCTCAATGTCAGCCACTCGCACCAAAATATGTGAAAAATTATAGATATGGCGATGGTTTGGGATTTTGCTTATTTGACAAAAA] consensusID : consensus_14553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 985 fasta sequence [CCGTCCCCAGTACCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAGATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGTAACAAGGTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAGCCGAGTTGCTGGTTTGGATAACCAAGGGATTGTTGGTCTTTAGAGGCAATCATGAAAGAACAAGTGAAGGTTTTGAGAAGTGGTAGAGACAGTTCTGTGTCAAACATATCGTTTTAGCGTCAAGAAGACTTACTCTGCTTCTAGATTGTCTGTGACTTGAAGATCTTGATGTGATCAAATTTTCTTTTATGTTTTGTAAGAGGTTGCTTTTTTACAAGCTACCAAGGCGTCTTTATCCTTTTCTACTTGTCTGCTTTTTTTTTCTGCTTCTCTTTGTCGTTTTTTTAATTATTTAACGTCCTTGCGTTCTAGCTCTCCTCTCCTCCGTCATCTGTTCCTCAATTACACTCGCTCTCCCTCTTGATTTCCCTTGTGTT] [+] EMBL BE040978 [CCGTCCCCAGTACCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAGATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGTAACAAGGTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAGCCGAGTTGCTGGTTTGGATAACCAAGGGATTGTTGGTCTTTAGAGGCAATCATGAAAGAACAAGTGAAGGTTTTGAGAAGTGGTAGAGACAGTTCTGTGTCAAACATATCGTTTTAGCGTCAAGAAGACTTACTCTGCTTCTAGATTGTCTGTGACTTGAAGATCTTGATGTGATCAAATTTTCTTTTATGTTTTGTAAGAGGTTGCTTTTTTACAAGCTACCAAGGCGTCTTTATCCTTTTCTACTTGTCTGCTTTTTTTTTCTGCTTCTCTTTGTCGTTTTTTTAATTATTTAACGTCCTTGCGTTCTAGCTCTCCTCTCCTCCGTCATCTGTTCCTCAATTACACTCGCTCTCCCTCTTGATTTCCCTTGTGTT] [+] EMBL CA753733 [ CAGTACCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCA ] [+] EMBL AU173374 [ ACCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAGAT ] consensusID : consensus_14553#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence [ACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATTTAAAACAAAACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAGCAGAGTTGCTGGTTTGGATAACCAAGGGATTGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACAAAACATATCGCTTTAGCAGTCAATGAAGAACTTACCCT-GCATACGAGATTGATTGATGACTTGG-AAGATCATGTT-GATGTTACAAACTC-GCGTCTTCAGCGTGTGCAAAAGAGGCTTGCAATTCTGAACAAGCGCACCAAAGGTGGCTGCTCATGCATGTGCCTGCTGCTATCTGTCGTCGCAATAGTGATCCTTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCATGACGTTTGTTCAACGCATCACTTTTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCATGGTTTTCATCTCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTGTACGTCATATGAGGCCCTGGCATATATGCCCAACAATATGTCTGAGACTACCACTCACGTGGAATTTGTTGGATAAGGTGAGAAGTATATATATGTTTTTGTGTGGACCCTAAAAGGA] [-] EMBL CB684988 [ACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATTTAAAACAAAACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAGCAGAGTTGCTGGTTTGGATAACCAAGGGATTGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACAAAACATATCGCTTTAGCAGTCAATGAAGAACTTACCCT GCATACGAGATTGATTGATGACTTGG AAGATCATGTT GATGTTACAAACTC GCGTCTTCAGCGTGTGCAAAAGAGGCTTGCAATTCTGAACAAGCGCACCAAAGGTGGCTGCTCATGCATGTGCCTGCTGCTATCTGTCGTCGCAATAGTGATCCTTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCATGACGTTTGTTCAACGCATCACTTTTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCATGGTTTTCATCTCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTGTACGTCATATGAGGCCCTGGCATATATGCCCAACAATATGTCTGAGACTACCACTCACGTGGAATTTGTTGGATAAGGTGAGAAGTATATATATGTTTTTGTGTGGACCCTAAAAGGA] [+] EMBL AA751734 [ AAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTTGCTTGGTCAGAACAAGAAGGCAGCTGATGATATGAGCAGAGTTGCTGGTTTGGATAACCAAGGGATTGTTGGCCTTCAGAGGCAAATTATGAAAGAACAAGATGAAGGTCTTGAGAAGCTGGAAGAGACAGTCCTGAGTACAAAACATATCGCTTTAGCAGTCAATGAAGAACTTACCCTGGCATACGAGATTGATTGATGACTTGGNAAGATCATGTTGGATGTTACAAACTCGGCGTCTTCAGCGTGTG ] consensusID : consensus_14553#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [TNNCNAANTCCTGNTTTGANAACCCNAGGGNTTTTCCCCTTCAAGNCAATTTTNGAANNNCAAGNTTNAGNCNCTTGGANCNNNNAAAANNNANNCCTGGNTCCNAAACNTTNTCCNTTTGNCANTCAATGAAGGCACTTCCCTGCCATCCGAGATTGATTGATCACTGGGAAGATCCATGTTGATGTTTACAAACTCGCGTCTTCAGCGTGTGCAAAAGAGGCTTGCAATCTGAACAAGCGCACCAAAGGTGGCTGCTCATGCATGTGCCTGCTGCTATCCTGTCGTCGCAATAGTGATCCTTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCATGACGTTTGTTCAACGCATCACTTCTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCATGGTTTTCAGCTCGGCTTTGTTCTCCTGGGTGTAATGGTTTTATCAGTGTGTGTACTTCATATGAGGCCCTGGCATATATGCCCAACAATATGTCTGAGACTAGCCTCACGTGGAATTTGTTGGATTGCAATGAGAAGTATATATATGTTTT] [-] EMBL BE229024 [TNNCNAANTCCTGNTTTGANAACCCNAGGGNTTTTCCCCTTCAAGNCAATTTTNGAANNNCAAGNTTNAGNCNCTTGGANCNNNNAAAANNNANNCCTGGNTCCNAAACNTTNTCCNTTTGNCANTCAATGAAGGCACTTCCCTGCCATCCGAGATTGATTGATCACTGGGAAGATCCATGTTGATGTTTACAAACTCGCGTCTTCAGCGTGTGCAAAAGAGGCTTGCAATCTGAACAAGCGCACCAAAGGTGGCTGCTCATGCATGTGCCTGCTGCTATCCTGTCGTCGCAATAGTGATCCTTGCTGTTATCGTGTGGCTTCTTATCAAGTATATGTAAAATGGATCCATGACGTTTGTTCAACGCATCACTTCTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCATGGTTTTCAGCTCGGCTTTGTTCTCCTGGGTGTAATGGTTTTATCAGTGTGTGTACTTCATATGAGGCCCTGGCATATATGCCCAACAATATGTCTGAGACTAGCCTCACGTGGAATTTGTTGGATTGCAATGAGAAGTATATATATGTTTT] consensusID : consensus_14553#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [TACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCGAGCTCTATCCTCGCCCACAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGGGTTCTTGCTAGGATCTTTGGGGGTGGGCTGGCGACCTGGTGTTGGGTGCTTGATGGGTTTGTTCGTTCGTGCGTGTGATCCGCCGTGGGAGGAAAGAGGAAGAGATTGTTCTCCTGAAGAAACCTTACCATTTCCGTTGGTGTTTTGATGAATGGATATGTTAGGATTGGTTTCTTTCTGTTATTCCCTGCAAGTTTCGTCAAGCTCAGCTTTGCGATTAGTTACTATGAGCTTATTACAATTTTTTACCTTTCTACAAGTTATTCATT] [+] EMBL CB640501 [TACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCCCGTCAGCGAGCTCTATCCTCGCCCACAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCCAGGGTTCTTGCTAGGATCTTTGGGGGTGGGCTGGCGACCTGGTGTTGGGTGCTTGATGGGTTTGTTCGTTCGTGCGTGTGATCCGCCGTGGGAGGAAAGAGGAAGAGATTGTTCTCCTGAAGAAACCTTACCATTTCCGTTGGTGTTTTGATGAATGGATATGTTAGGATTGGTTTCTTTCTGTTATTCCCTGCAAGTTTCGTCAAGCTCAGCTTTGCGATTAGTTACTATGAGCTTATTACAATTTTTTACCTTTCTACAAGTTATTCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 TCTTCCTACCGTGCGTGAGCCGTCCCCAGTACCAGTACTCACCACCTACGCGGTCGCCCA 60 consensus_14553#1 ------------------------------------------------------------ consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 CCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTC 120 consensus_14553#1 ------------------------------------------------------------ consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 GTCGCCGTCGGCCCTATCCCCCGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGC 180 consensus_14553#1 ------------------------------------------------------------ consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 GAGAGAGAAAACAAGAAGAGGAGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGA 240 consensus_14553#1 ------------------------------------------------------------ consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 TCTCCGGTTCCCAGATCGGCCAGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTA 300 consensus_14553#1 ----------------------------------------------------------CC 2 consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 CAATGAGGCATCTAGGCTTGCTGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCT 360 consensus_14553#1 GTCCCCAGTACCAGTACTCACCACCTACGCGGTCGCCCACCGCGCCGTCGCCGGCGCCGG 62 consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 TCCACAATCAGGCCCGGAAATTATACGTCACACATCAGCCATTCGAAGAAAAATAACTAT 420 consensus_14553#1 TCAGCCCCTCACCGCCGCCTCCCGTTCGCCAACGACGTCGTCGCCGTCGGCCCTATCCCC 122 consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 TCTTTGTACTAGACTGGATAGCTTGGAAGCATTGTTGTCCAAGATTCCTCCGAAGTCACT 480 consensus_14553#1 CGTCAGCTCCGTCAAAGGCACGGAGAAACGAACAAACGCGAGAGAGAAAACAAGAAGAGG 182 consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 -----ACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATTTAAAACAAA 55 consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 CAGTGACAAGGAGTTACACAAGCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAA 540 consensus_14553#1 AGGAGGAGCCGACGCAACCGAGGCCCCAGTTCCGATTGATCTCCGGTTCCCAGATCGGCC 242 consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTT---GCTTGG 112 consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 ACAGATGGCAACAAGTTTTAACATGTCAAACTTTGCCAACAGGGAGGACTT---GCTTGG 597 consensus_14553#1 AGCAATGGCTTCATCTTCGGACCCATGGATGAAAGAGTACAATGAGGCATCTAGGCTTGC 302 consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 TCAGAACAAGAAGGCAGCTGATGATATGAGCAGAGTTGCTGGTTTGGATAACCAAGGGAT 172 consensus_14553#3 ----------------------------TNNCNAANTCCTGNTTTGANAACCCNAGGGNT 32 consensus_14553#0 TCAGAACAAGAAGGCAGCTGATGATATGAGCAGAGTTGCTGGTTTGGATAACCAAGGGAT 657 consensus_14553#1 TGATGATATCAATTCCATGATTGCCGATAGAGGGTCTCTTCCACAATCAGGCCCGGAAAT 362 consensus_14553#4 ----------------------------------------------------TACGCGGT 8 * * consensus_14553#2 TGTTGGCCTT-CAGAGGCAAATTATGAAAGAACAAG-ATGAAGGTCTTGAGAAGCTGGAA 230 consensus_14553#3 T-TTCCCCTT-CAA--GNCAATTTTNGAANNNCAAG-NTTNAGNCNCTTGGANCNNNNAA 87 consensus_14553#0 TGTTGGCCTT-CAGAGGCAAATTATGAAAGAACAAG-ATGAAGGTCTTGAGAAGCTGGAA 715 consensus_14553#1 TATACGTCACACATCAGCCATTCGAAGAAAAATAACTATTCTTTGTACTAGACTGGATAG 422 consensus_14553#4 CGCCCACCGCGCCGTCGCCGGCGCCGGTCAGCCCCTCACCGCCGCCTCCCGTTCGCCAAC 68 * * * * * consensus_14553#2 GAGACAGTCCTGAGTACAAAACAT-ATCGCTTTAGCAGTCAATGA-AGA-ACTTACCCTG 287 consensus_14553#3 AANNNANNCCTGGNTCCNAAACNTTNTCCNTTTGNCANTCAATGA-AGGCACTTCCCTGC 146 consensus_14553#0 GAGACAGTCCTGAGTACAAAACAT-ATCGCTTTAGCAGTCAATGA-AGA-ACTTACCCTG 772 consensus_14553#1 CTTGGAAGCATTGTTGTCCAAGATTCCTCCGAAGTCACTCAGTGACAAGGAGTTACACAA 482 consensus_14553#4 GACGTCGTCGCCGTCG---------GCCCTATCCCCCGTCAGCGA-----GCTCTATCCT 114 * * *** ** * consensus_14553#2 CATACGAGAT-TGATTGATGACTTGGAA----GATC-ATGTTGATGTT-ACAAACTCGCG 340 consensus_14553#3 CATCCGAGAT-TGATTGATCACTGGGAA----GATCCATGTTGATGTTTACAAACTCGCG 201 consensus_14553#0 CATACGAGAT-TGATTGATGACTTGGAA----GATC-ATGTTGATGTT-ACAAACTCGCG 825 consensus_14553#1 GCGCCAAGACACGCTTTCCAATTTGAAATCTAAAACAAAACAGATGGTAACAAGGTTTAA 542 consensus_14553#4 CGCCCACAGCTCCGTCAAAGGCACGGAG----AAACGA-----------ACAAACGCGAG 159 * * * * * * * **** consensus_14553#2 TCT-TCAGCGTGTGCAAAAGAGGCTTGCAATTCTGAACAAGCGCACCAAAGGTGGCTGCT 399 consensus_14553#3 TCT-TCAGCGTGTGCAAAAGAGGCTTGCAAT-CTGAACAAGCGCACCAAAGGTGGCTGCT 259 consensus_14553#0 TCT-TCAGCGTGTGCAAAAGAGGCTTGCAATTCTGAACAAGCGCACCAAAGGTGGCTGCT 884 consensus_14553#1 CATGTCAAACTTTGCCAACAGGGAGGACT-TGCTTGGTCAGAACAA-GAAGGCAGCTGAT 600 consensus_14553#4 ------AGAGAAAACAAGAAGAGGAGGAG-----GAGCCGACGCAACCGAGGCCCCAGTT 208 * * * * ** *** * * * consensus_14553#2 C--ATGCATGT--GCCTGCTGCTATC---TGTCGTCGCAATAGTGATCCTT-GCTGTTAT 451 consensus_14553#3 C--ATGCATGT--GCCTGCTGCTATCC--TGTCGTCGCAATAGTGATCCTT-GCTGTTAT 312 consensus_14553#0 C--ATGCATGT--GCCTGCTGCTATC---TGTCGTCGCAATAGTGATCCTT-GCTGTTAT 936 consensus_14553#1 G--ATATGAGCCGAGTTGCTGGTTTGGATAACCAAGGGATTGTTGGTCTTTAGAGGCAAT 658 consensus_14553#4 CCGATTGATCTCCGGTTCCCAG-ATCGGCCAGGGTTCTTGCTAGGATCTTTGGGGGTGGG 267 ** * * * * ** ** * * consensus_14553#2 CGTGTGGCTTCTTATCAAGTATATGTAAAATGG-ATCCATGACGTT-TGTTCAACGCATC 509 consensus_14553#3 CGTGTGGCTTCTTATCAAGTATATGTAAAATGG-ATCCATGACGTT-TGTTCAACGCATC 370 consensus_14553#0 CGTGTGGCTTCTTATCAAGTATATGTAAAATGG-ATCCATGACGTT-TGTTCAACGCATC 994 consensus_14553#1 CATGAAAGAACAAGTGAAGGTTTTGAGAAGTGGTAGAGACAGTTCTGTGTCAAACATATC 718 consensus_14553#4 CTGGCGACCTGGTGTTGGGTGCTTG----ATGG-GTTTGTT-CGTT-CGTGCGTGTGATC 320 * * * * ** *** * ** *** consensus_14553#2 ACTTTTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCATGGTTTTCAT--C 567 consensus_14553#3 ACTTCTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCATGGTTTTCAG--C 428 consensus_14553#0 ACTTCTGCGCTACTCATCAAAATGTGCAGCCTTTTAAAGATGTACCATGGTTTTCAT--C 1052 consensus_14553#1 GTTTTAGCG----TCAAGAAGACTTACTCTGCTTCTAGATTGT-CTGTGACTTGAAGATC 773 consensus_14553#4 CGCCGTGGGAGGAAAGAGGAAGAGATTGTTCTCCTGAAGAAACCTTACCATTTCCG---- 376 * * * * ** consensus_14553#2 TCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTG-TACGTCATATGAGGCCC 626 consensus_14553#3 TCGGCTTTGTTCTCCTGGGTGTAATGGTTTTATCAGTGTGTG-TACTTCATATGAGGCCC 487 consensus_14553#0 TCGGCTTTGTTCTCCTGGGTGGAATGGTTTTATCAGTGTGTG-TACGTCATATGAGGCCC 1111 consensus_14553#1 TTGATGTGATCAAATTTTCTTTTATG-TTTTGTAAGAGGTTGCTTTTTTACAAGCTACCA 832 consensus_14553#4 TTGGTGTT-------TTGATG-AATGGATATGTTAGGATTGGTTTCTTTCTGTTATTCCC 428 * * * * * *** * * * ** * * * ** consensus_14553#2 TGGCATATATGCCCAACAATATGTCTGAGACTACCACTCACG-TGGAATTTGTTGGAT-- 683 consensus_14553#3 TGGCATATATGCCCAACAATATGTCTGAGACTAGC-CTCACG-TGGAATTTGTTGGATT- 544 consensus_14553#0 TGGCATATATGCCCAACAATATGTCTGAGACTACCACTCACG-TGGAATTTGTTGGATT- 1169 consensus_14553#1 AGGCGTCTTTATCCTTTTCTACTTGTCTGCTTTTTTTTTCTGCTTCTCTTTGTCGTTTTT 892 consensus_14553#4 TG-CAAGTTTCGTCAAGCTCAGCTTTGCGATTAGTTACTATG----AGCTTATTACAAT- 482 * * * * * * * * * * * ** * consensus_14553#2 -AAGGTGAGAAGTATATATATGTTTTTGTGTGGACCCTAAAAGGA--------------- 727 consensus_14553#3 -GCAATGAGAAGTATATATATGTTTT---------------------------------- 569 consensus_14553#0 -GCAATGAGAAGTATATATATGTTTTTGTGTGTGGAGATGTAACTGCTGTAGCATTGTCA 1228 consensus_14553#1 TTAATTATTTAACGTCCTTGCGTTCTAGCTCTCCTCTCCTCCGTCATCTGTTCCTCAATT 952 consensus_14553#4 ----TTTTTACCTTTCTACAAGTTATTCATT----------------------------- 509 * * *** * consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 ATCCTTGGCATGTGCATTCAGAAAGTGTGTGCGTTCAGATAGGATTTCATTTTTCTGTGA 1288 consensus_14553#1 ACACTCGCTCTCCCTCTTGATTTCCCTTGTGTT--------------------------- 985 consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 ------------------------------------------------------------ consensus_14553#3 ------------------------------------------------------------ consensus_14553#0 TCGGTTGCTGTCGATATGTACAAGCTCAATGTCAGCCACTGGCACAAAATATGTGAAAAA 1348 consensus_14553#1 ------------------------------------------------------------ consensus_14553#4 ------------------------------------------------------------ consensus_14553#2 -------------------------------------------- consensus_14553#3 -------------------------------------------- consensus_14553#0 TTATAGATACGGCGATGTAATGGATTTTGCTTATTTGACAAAAA 1392 consensus_14553#1 -------------------------------------------- consensus_14553#4 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||