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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1230 fasta sequence
[TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT-AAGGCCAAAGGAGCAGACATT-GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG-AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA-AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA-ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA-AATCCAAGCTCTGC-TGCTTCAATGCACTATA-CTATACTACATCACTGCTGTA-TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT-GCAAAAT-GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAAAACATTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAGAAGCAATAAACATAGTTTACGTGTAAAAAA]
[+] EMBL AK066172 [TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAG ]
[+] EMBL CF313515 [ CCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATTGGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGC ]
[+] EMBL AF458088 [ CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCGCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACGAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAGAGCATTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAGAAGCAATAAACATAGTTTACGTGTAAAAAA]
[+] EMBL AK104481 [ CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGGCGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTA ]
[+] EMBL AK104797 [ CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACT ]
[+] EMBL AU184019 [ GCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATG ]
[+] EMBL CA753532 [ GCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATN GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATNGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATNTGAAGGTGGGG AAGCTCTCAACTGGCGATNCTCTAGATATGTCT CCCATGACGAGTCAGCAATATTGACCAATGATGCTACAGTCANGGGATATGANGGGAG CGCGGTGGCATATGTNGCTGACATTGTTTC ACAC ]
[+] EMBL AB110165 [ CCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAGAGCATT ]
[+] EMBL BP184380 [ CCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAAGGCCAAgg ]
[+] EMBL C28489 [ CTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGGAAAGCTCTCAACTGGCGATTCTCTAGATATGTCTTCCCAT ]
[+] EMBL AU031688 [ canCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTNAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAAATTTGTAGAATATTCTGGCAAAATGGTGCca ]
[+] EMBL AU082334 [ AGNTGNGACTNATATTGTTGANGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGACACCTGNNTNCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCCGTGGGNAATGCATATCGGATCTTTGAATNATGAAGCTTANNCACCTGTTCATCA AATCNAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA T ]
[+] EMBL AU184048 [ ACAAGGCAGTTACANAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATNAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGN TGCTTCAATGCACTATA CTATACTACATCNCTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTNT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAAAAAAA ]
[+] EMBL AU031689 [ ATGCATATCGGATCTTTGANTGATGAAGCTTAGAANCCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATACCTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATNCAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAANCTAAGATAAGTGNTGGGCGGTGGAGTTATTTTCTTAAAAAAA ]
[+] EMBL AU029928 [ tcAGAAACCTGNTCATCANATTCCAAGCTCTGCTTGCTTCAATGCACTATA CTATACTACATCACTGCTGTATTGATNTTTCANGGGGANGCGTATACAATTNTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCNAACTAAGATAAGTGGTGGNCGGTGGAGTTATTTTCTTNATNAAA ]
consensusID : consensus_14557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAATGCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAAAAAAAAAAAA]
[+] EMBL AU184020 [AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAATGCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAAAAAAAAAAAA]
consensusID : consensus_14557#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence
[TCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTGCAGTGTAATGAAACTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTTTTAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF313516 [TCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTGCAGTGTAATGAAACTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTTTTAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14557#0 TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCC 60
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 CCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCC 120
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 ATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAG 180
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 TTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATAC 240
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 CATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTC 300
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 GGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCA 360
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 TTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAGGCCAAAGGAGCA 420
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 GACATTGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATC 480
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 CCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTG 540
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 AAGGAACTCAATTTGAAGGTTGGGAAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCC 600
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 CATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCG 660
consensus_14557#1 -------AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCG 53
consensus_14557#2 ----------------------TCACTGCTG-TATGATTTTTCATGGGGATGCGTATACA 37
** ** ** ** * ** *** * *
consensus_14557#0 GTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGAT 720
consensus_14557#1 GTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGAT 113
consensus_14557#2 ATT-TTTAGGTTCCCCTGAGGCCCTGATCCCCCGTA---TGTACAAAATTCTTGGCAATT 93
* ** *** * * * * * * ** * * * * *** ** * *
consensus_14557#0 ATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGAACCTGGTTGCTGTGACA 780
consensus_14557#1 ATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACA 173
consensus_14557#2 ACT-TGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTG--CAGTGTAATG 150
* * * *** ** ** ** * ** **** ** ** *** *
consensus_14557#0 GCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCG 840
consensus_14557#1 GCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCG 233
consensus_14557#2 AAA---CTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGA-GTTA 206
* ** * **** * * * * * ***** ** * *
consensus_14557#0 GATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAAT 900
consensus_14557#1 GATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAAT 293
consensus_14557#2 TTTTTTTAAAAAAAAAAAAAAAAAAAAA-------------------------------- 234
* *** ** * ** * ***
consensus_14557#0 GCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTT 960
consensus_14557#1 GCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTT 353
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 TAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATC 1020
consensus_14557#1 TAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATC 413
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 AATAGCGTGGAATTTTGTAGAATATTCTGCAAAATGTGCAGTGTAATGAAACTAAATAAG 1080
consensus_14557#1 AAAAAAAAAAAA------------------------------------------------ 425
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 GTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAAAACA 1140
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 TTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAG 1200
consensus_14557#1 ------------------------------------------------------------
consensus_14557#2 ------------------------------------------------------------
consensus_14557#0 AAGCAATAAACATAGTTTACGTGTAAAAAA 1230
consensus_14557#1 ------------------------------
consensus_14557#2 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||