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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1505 fasta sequence
[TTTCTTTCTTTCATNCCTTTCCTCCTGCGAGTNCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGANAGATGTGGGTGGCGATTCTNTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGTTCCGTCTCCCGCCCCCTCCCCTAATCCTCCCCCGATGCCCTAAATCCCCTATCTCCCTCCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAGAAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTGCCGTTACGAACCAAAGGGCAAATTCTTTAAAACCTGCAGGATTAGCCCTTTTAGGGA]
[+] EMBL C72408 [TTTCTTTCTTTCATNCCTTTCCTCCTGCGAGTNCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGANAGATGTGGGTGGCGATTCTNTGCGGGCTGTTGGCGTACAAGATCATCCGCCGC ]
[+] EMBL AK059043 [ CATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGTTCCGTCTCCCGCCCCCTCCCCTAATCCTCCCCCGATGCCCTAAATCCCCTATCTCCCTCCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAGAAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAA ]
[+] EMBL CF315960 [ TGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF315961 [ GTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CF310613 [ ACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTGCCGTTACGAACCAAAGGGCAAATTCTTTAAAACCTGCAGGATTAGCCCTTTTAGGGA]
consensusID : consensus_14565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1350 fasta sequence
[ACTGGAGATTTCTTTCTTTCTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAG-AAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTC-AACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTT-TGCCGATTCATAGTCCAGA-AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA-GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA-CTGAGTGCCTAGTGAGTTGAAATTTTATCCA-CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAACTTAATCGTTGATATTTAGTTTCCAAAAAAAAAA]
[+] EMBL CF316169 [ACTGGAGATTTCTTTCTTTCTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGTGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAG ACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAGAAAGAGGGGAGCAAAACTGCCTGATGG ]
[+] EMBL OSS12046A [ CTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGGCGGCGAGCGCCAG ATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATA ]
[+] EMBL AK070910 [ CCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAG AAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTC AACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTT TGCCGATTCATAGTCCAGA AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGTGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAAT ]
[+] EMBL CF315189 [ CCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAG AAGAGGGGAGCAAAACTGCCTGATGGTCATATA ]
[-] EMBL CF316168 [ TAT TTGTACGATCAATGGAAAGACCTTAAAGCAGATTCCAAAGGTGGACTTTCAAACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTT TGCCGATTCATAGTCCAGA AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGTGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGAaaaaa ]
[+] EMBL BI805867 [ CGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAA GCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTTGTGCCGATTCATAGTCCAGAGAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCATGTG AACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGNGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAAT ]
[+] EMBL AU172493 [ GATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTT TGCCGATTCATAGTCCAGA AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGTGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAA ]
[+] EMBL BI804353 [ TAGTCCAGA AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCCCGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACCATATACAGAAATTCTTTTTCAGCCCTTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACCTGAGTGCCTAGTGAGTTGAAATTTTATCCACCGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCCACCTGTACTTACTTTAAGATGTCCGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAATCGTTGATATTTAGTTTCCAAAAAAAAAA]
[-] EMBL CF315190 [ CTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGTGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTG ]
consensusID : consensus_14565#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[AGTAGATGATTCTGTTGTCATAAATAAATGAGATAATTAGCTTGATTGACTTGCTATATTTACCTTACCTGGTCGTTTTGTTATTGCATTTCAGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCACCTTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACCGGGGTACTTCCTGTTCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAA]
[+] EMBL BI813169 [AGTAGATGATTCTGTTGTCATAAATAAATGAGATAATTAGCTTGATTGACTTGCTATATTTACCTTACCTGGTCGTTTTGTTATTGCATTTCAGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCACCTTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACCGGGGTACTTCCTGTTCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAA]
consensusID : consensus_14565#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[CGGGTGTGTGTCAGCCCACGTGTGCCACCCGTCGGAAAACAAAGGTGTAAAGAAGGTGTCACAGTCGTGTGTCACAGGTGGTGTGCCGTGTCGGTGGTGACACCCTGAGTGCCGTAGGTGAGTTGAAAAGTGTTTGTAGTCCACCCGGGGGGTACTTTTCCGTGGTTGCCAGGTAGTAGTAGTAGGAAGAGTACCGTGTCCCGTGGCGTGTCGTGGTAGTGGTGCGTCCGTCAGTGTAAAAGTGTTGGTCGTGTGCGTTGCTGTGTCGTGGTACCACCCCACCGTGGTACCGTTACTTGTAAAGAAGTGGTCCGGTGTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAATCGTTGATATTTAGTTTCCAAAAAAAAAA]
[+] EMBL BI804391 [CGGGTGTGTGTCAGCCCACGTGTGCCACCCGTCGGAAAACAAAGGTGTAAAGAAGGTGTCACAGTCGTGTGTCACAGGTGGTGTGCCGTGTCGGTGGTGACACCCTGAGTGCCGTAGGTGAGTTGAAAAGTGTTTGTAGTCCACCCGGGGGGTACTTTTCCGTGGTTGCCAGGTAGTAGTAGTAGGAAGAGTACCGTGTCCCGTGGCGTGTCGTGGTAGTGGTGCGTCCGTCAGTGTAAAAGTGTTGGTCGTGTGCGTTGCTGTGTCGTGGTACCACCCCACCGTGGTACCGTTACTTGTAAAGAAGTGGTCCGGTGTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAATCGTTGATATTTAGTTTCCAAAAAAAAAA]
consensusID : consensus_14565#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[TCTTTCTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCA]
[+] EMBL CA752731 [TCTTTCTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14565#0 ----------------------------------------------------TTTCTTTC 8
consensus_14565#4 ------------------------------------------------------TCTTTC 6
consensus_14565#1 ----------------------------------------ACTGGAGATTTCTTTCTTTC 20
consensus_14565#2 AGTAGATGATTCTGTTGTCATAAATAAATGAGATAATTAGCTTGATTGACTTGCTATATT 60
consensus_14565#3 ----------------------------------------------------CGGGTGTG 8
* *
consensus_14565#0 TTTCATNCCTT-TCCTCCTGCGAGTNCGAGTGCGATCCGGGGCAAG-GCAAATCCGATTC 66
consensus_14565#4 TTTCATTCCTT-TCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAG-GCAAATCCGATTC 64
consensus_14565#1 TTTCATTCCTT-TCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAG-GCAAATCCGATTC 78
consensus_14565#2 TACCTTACCTGGTCGTTTTGTTATTGCATTTCAGGTCGGTCAAGAGTGCAAATATTGTAT 120
consensus_14565#3 TGTCAGCCCACGTGTGCCACCCGTCGGAAAACAAAGGTGTAAAGAAGGTGTCACAGTCGT 68
* * ** * * * *
consensus_14565#0 CGAGCTCAGA-GGCATCAGGCGTCGAGTTCGTCGATC-GATCGCTGCAGAGAAGCAG-AG 123
consensus_14565#4 CGAGCTCAGA-GGCATCAGGCGTCGAGTTCGTCGATC-GATCGCTGCAGAGAAGCAG-AG 121
consensus_14565#1 CGAGCTCAGA-GGCATCAGGCGTCGAGTTCGTCGATC-GATCGCTGCAGAGAAGCAG-AG 135
consensus_14565#2 TCACCACGAG-ATTATCGTGCTGAAGGAACTTCATCC-TCTGAATGGAAAGAGATATCAG 178
consensus_14565#3 GTGTCACAGGTGGTGTGCCGTGTCGGTGGTGACACCCTGAGTGCCGTAGGTGAGTTGAAA 128
* * * * * * * * *
consensus_14565#0 AGAGATCGAGANAGATGTGGGTGGCGATTCTNTGCGGGCT-GTTGGCGTACAAGATCATC 182
consensus_14565#4 AGAGAT----------GTGGGTGGAGATTCTGTGCGGGCT-GTTGGCGTACAAGATCATC 170
consensus_14565#1 AGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCT-GTTGGCGTACAAGATCATC 194
consensus_14565#2 TGAAACA---------ATATACAGAAATTCTTTTTCACCTTGCACTCGAAAAAAGTTAAG 229
consensus_14565#3 AGTGTTTGTAGTCCACCCGGGGGGTACTTTTCCGTGG--TTGCCAGGTAGTAGTAGTAGG 186
* * ** * * * * *
consensus_14565#0 CGCCGCGTCTTCTTCGCCG--ACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCG 240
consensus_14565#4 CGCCGCGTCTTCTTCGCCG--ACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCG 228
consensus_14565#1 CGCCGCGTCTTCTTCGCCG--ACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCG 252
consensus_14565#2 AAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTA 289
consensus_14565#3 AAGAGTACCGTGTCCCGTGGCGTGTCGTGGTAGTGGTGCGTC-CGTCAGTGTAAAAGT-G 244
* * * * * * * * * *
consensus_14565#0 CCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGTTCCGTCTCCCGCCCCCTCCCCTAA 300
consensus_14565#4 CCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGG------------------------- 263
consensus_14565#1 CCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGG------------------------- 287
consensus_14565#2 TCCACCGGGGTACTTCCTGTTCAGTAGTATATAGAGTACCTTCCTGGCT----------- 338
consensus_14565#3 TTGGTCGTGTGCGTTGCTGTGTCGTGGTA-CCACCCCACCGTGGTACCGT---------- 293
* * ** * * *
consensus_14565#0 TCCTCCCCCGATGCCCTAAATCCCCTATCTCCCTCCCTCCAGGCTCGAGAAGCTCTACTC 360
consensus_14565#4 -------------------------------------------CTCGAGAAGCTCTACTC 280
consensus_14565#1 -------------------------------------------CTCGAGAAGCTCTACTC 304
consensus_14565#2 ---------------------------------TCTGTATGTGCTCCTCAGTTAAAGTTT 365
consensus_14565#3 -----------------------------------------TACTTGTAAAG----AAGT 308
** *
consensus_14565#0 CGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCC-GACGCCGGCGAGCGCCAG--CA 417
consensus_14565#4 CGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCC-GACGCCGGCGAGCGCCAG--CA 337
consensus_14565#1 CGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCC-GACGCCGGCGAGCGCCAG--CA 361
consensus_14565#2 GTCTTGTTGTTTCTGTACACCACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTA 425
consensus_14565#3 GGTCCGGTGTAGCATGAAATTAGAAAAAAATGAAT---GATTTGAATATGCCTCTTAATC 365
* ** * ** **
consensus_14565#0 TGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTC 477
consensus_14565#4 TGTCGACCTCGTCCTCCTTACCA------------------------------------- 360
consensus_14565#1 TGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTC 421
consensus_14565#2 GAAAAAAATGAATGATTTGAATAAAAAA-------------------------------- 453
consensus_14565#3 GTTGATATTTAGTTTCCAAAAAAAAAA--------------------------------- 392
* * *
consensus_14565#0 TGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAA 537
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 TGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAA 481
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 GCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATC 597
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 GCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATC 541
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 GTACTTGGAGAAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACT 657
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 GTACTTGGAGAAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACT 601
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 GCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTA 717
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 GCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTA 661
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 CGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGG 777
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 CGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGG 721
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 TGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCAT 837
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 TGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCAT 781
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 TCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGG 897
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 TCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGG 841
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 TGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAG 957
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 TGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAG 901
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 ATCAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTC 1017
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 ATCAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTC 961
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 AAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGA 1077
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 AAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGA 1021
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 ATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAA 1137
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 ATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAA 1081
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 AAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGT 1197
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 AAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGT 1141
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 TGAAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTT 1257
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 TGAAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTT 1201
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 CTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTAC 1317
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 CTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTAC 1261
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 TTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAA 1377
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 TTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAACTTAA 1321
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1437
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 TCGTTGATATTTAGTTTCCAAAAAAAAAA------------------------------- 1350
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 CCCTTGTCTTGCCGTTACGAACCAAAGGGCAAATTCTTTAAAACCTGCAGGATTAGCCCT 1497
consensus_14565#4 ------------------------------------------------------------
consensus_14565#1 ------------------------------------------------------------
consensus_14565#2 ------------------------------------------------------------
consensus_14565#3 ------------------------------------------------------------
consensus_14565#0 TTTAGGGA 1505
consensus_14565#4 --------
consensus_14565#1 --------
consensus_14565#2 --------
consensus_14565#3 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||