These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1505 fasta sequence [TTTCTTTCTTTCATNCCTTTCCTCCTGCGAGTNCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGANAGATGTGGGTGGCGATTCTNTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGTTCCGTCTCCCGCCCCCTCCCCTAATCCTCCCCCGATGCCCTAAATCCCCTATCTCCCTCCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAGAAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTGCCGTTACGAACCAAAGGGCAAATTCTTTAAAACCTGCAGGATTAGCCCTTTTAGGGA] [+] EMBL C72408 [TTTCTTTCTTTCATNCCTTTCCTCCTGCGAGTNCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGANAGATGTGGGTGGCGATTCTNTGCGGGCTGTTGGCGTACAAGATCATCCGCCGC ] [+] EMBL AK059043 [ CATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGTTCCGTCTCCCGCCCCCTCCCCTAATCCTCCCCCGATGCCCTAAATCCCCTATCTCCCTCCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAGAAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAA ] [+] EMBL CF315960 [ TGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF315961 [ GTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF310613 [ ACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTGCCGTTACGAACCAAAGGGCAAATTCTTTAAAACCTGCAGGATTAGCCCTTTTAGGGA] consensusID : consensus_14565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1350 fasta sequence [ACTGGAGATTTCTTTCTTTCTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAG-AAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTC-AACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTT-TGCCGATTCATAGTCCAGA-AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA-GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA-CTGAGTGCCTAGTGAGTTGAAATTTTATCCA-CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAACTTAATCGTTGATATTTAGTTTCCAAAAAAAAAA] [+] EMBL CF316169 [ACTGGAGATTTCTTTCTTTCTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGTGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAG ACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAGAAAGAGGGGAGCAAAACTGCCTGATGG ] [+] EMBL OSS12046A [ CTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGGCGGCGAGCGCCAG ATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATA ] [+] EMBL AK070910 [ CCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAG AAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTC AACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTT TGCCGATTCATAGTCCAGA AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGTGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAAT ] [+] EMBL CF315189 [ CCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAG AAGAGGGGAGCAAAACTGCCTGATGGTCATATA ] [-] EMBL CF316168 [ TAT TTGTACGATCAATGGAAAGACCTTAAAGCAGATTCCAAAGGTGGACTTTCAAACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTT TGCCGATTCATAGTCCAGA AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGTGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGAaaaaa ] [+] EMBL BI805867 [ CGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAA GCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTTGTGCCGATTCATAGTCCAGAGAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCATGTG AACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGNGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAAT ] [+] EMBL AU172493 [ GATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTT TGCCGATTCATAGTCCAGA AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGTGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAA ] [+] EMBL BI804353 [ TAGTCCAGA AATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCCCGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACCATATACAGAAATTCTTTTTCAGCCCTTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACCTGAGTGCCTAGTGAGTTGAAATTTTATCCACCGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCCACCTGTACTTACTTTAAGATGTCCGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAATCGTTGATATTTAGTTTCCAAAAAAAAAA] [-] EMBL CF315190 [ CTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCA GTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACA CTGAGTGCCTAGTGAGTTGAAATTTTATCCA CGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTG ] consensusID : consensus_14565#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [AGTAGATGATTCTGTTGTCATAAATAAATGAGATAATTAGCTTGATTGACTTGCTATATTTACCTTACCTGGTCGTTTTGTTATTGCATTTCAGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCACCTTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACCGGGGTACTTCCTGTTCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAA] [+] EMBL BI813169 [AGTAGATGATTCTGTTGTCATAAATAAATGAGATAATTAGCTTGATTGACTTGCTATATTTACCTTACCTGGTCGTTTTGTTATTGCATTTCAGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCACCTTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACCGGGGTACTTCCTGTTCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAA] consensusID : consensus_14565#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [CGGGTGTGTGTCAGCCCACGTGTGCCACCCGTCGGAAAACAAAGGTGTAAAGAAGGTGTCACAGTCGTGTGTCACAGGTGGTGTGCCGTGTCGGTGGTGACACCCTGAGTGCCGTAGGTGAGTTGAAAAGTGTTTGTAGTCCACCCGGGGGGTACTTTTCCGTGGTTGCCAGGTAGTAGTAGTAGGAAGAGTACCGTGTCCCGTGGCGTGTCGTGGTAGTGGTGCGTCCGTCAGTGTAAAAGTGTTGGTCGTGTGCGTTGCTGTGTCGTGGTACCACCCCACCGTGGTACCGTTACTTGTAAAGAAGTGGTCCGGTGTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAATCGTTGATATTTAGTTTCCAAAAAAAAAA] [+] EMBL BI804391 [CGGGTGTGTGTCAGCCCACGTGTGCCACCCGTCGGAAAACAAAGGTGTAAAGAAGGTGTCACAGTCGTGTGTCACAGGTGGTGTGCCGTGTCGGTGGTGACACCCTGAGTGCCGTAGGTGAGTTGAAAAGTGTTTGTAGTCCACCCGGGGGGTACTTTTCCGTGGTTGCCAGGTAGTAGTAGTAGGAAGAGTACCGTGTCCCGTGGCGTGTCGTGGTAGTGGTGCGTCCGTCAGTGTAAAAGTGTTGGTCGTGTGCGTTGCTGTGTCGTGGTACCACCCCACCGTGGTACCGTTACTTGTAAAGAAGTGGTCCGGTGTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAATCGTTGATATTTAGTTTCCAAAAAAAAAA] consensusID : consensus_14565#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TCTTTCTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCA] [+] EMBL CA752731 [TCTTTCTTTCATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCTCAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14565#0 ----------------------------------------------------TTTCTTTC 8 consensus_14565#4 ------------------------------------------------------TCTTTC 6 consensus_14565#1 ----------------------------------------ACTGGAGATTTCTTTCTTTC 20 consensus_14565#2 AGTAGATGATTCTGTTGTCATAAATAAATGAGATAATTAGCTTGATTGACTTGCTATATT 60 consensus_14565#3 ----------------------------------------------------CGGGTGTG 8 * * consensus_14565#0 TTTCATNCCTT-TCCTCCTGCGAGTNCGAGTGCGATCCGGGGCAAG-GCAAATCCGATTC 66 consensus_14565#4 TTTCATTCCTT-TCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAG-GCAAATCCGATTC 64 consensus_14565#1 TTTCATTCCTT-TCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAG-GCAAATCCGATTC 78 consensus_14565#2 TACCTTACCTGGTCGTTTTGTTATTGCATTTCAGGTCGGTCAAGAGTGCAAATATTGTAT 120 consensus_14565#3 TGTCAGCCCACGTGTGCCACCCGTCGGAAAACAAAGGTGTAAAGAAGGTGTCACAGTCGT 68 * * ** * * * * consensus_14565#0 CGAGCTCAGA-GGCATCAGGCGTCGAGTTCGTCGATC-GATCGCTGCAGAGAAGCAG-AG 123 consensus_14565#4 CGAGCTCAGA-GGCATCAGGCGTCGAGTTCGTCGATC-GATCGCTGCAGAGAAGCAG-AG 121 consensus_14565#1 CGAGCTCAGA-GGCATCAGGCGTCGAGTTCGTCGATC-GATCGCTGCAGAGAAGCAG-AG 135 consensus_14565#2 TCACCACGAG-ATTATCGTGCTGAAGGAACTTCATCC-TCTGAATGGAAAGAGATATCAG 178 consensus_14565#3 GTGTCACAGGTGGTGTGCCGTGTCGGTGGTGACACCCTGAGTGCCGTAGGTGAGTTGAAA 128 * * * * * * * * * consensus_14565#0 AGAGATCGAGANAGATGTGGGTGGCGATTCTNTGCGGGCT-GTTGGCGTACAAGATCATC 182 consensus_14565#4 AGAGAT----------GTGGGTGGAGATTCTGTGCGGGCT-GTTGGCGTACAAGATCATC 170 consensus_14565#1 AGAGATCGAGAGAGATGTGGGTGGAGATTCTGTGCGGGCT-GTTGGCGTACAAGATCATC 194 consensus_14565#2 TGAAACA---------ATATACAGAAATTCTTTTTCACCTTGCACTCGAAAAAAGTTAAG 229 consensus_14565#3 AGTGTTTGTAGTCCACCCGGGGGGTACTTTTCCGTGG--TTGCCAGGTAGTAGTAGTAGG 186 * * ** * * * * * consensus_14565#0 CGCCGCGTCTTCTTCGCCG--ACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCG 240 consensus_14565#4 CGCCGCGTCTTCTTCGCCG--ACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCG 228 consensus_14565#1 CGCCGCGTCTTCTTCGCCG--ACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCG 252 consensus_14565#2 AAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTA 289 consensus_14565#3 AAGAGTACCGTGTCCCGTGGCGTGTCGTGGTAGTGGTGCGTC-CGTCAGTGTAAAAGT-G 244 * * * * * * * * * * consensus_14565#0 CCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGGTTCCGTCTCCCGCCCCCTCCCCTAA 300 consensus_14565#4 CCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGG------------------------- 263 consensus_14565#1 CCCACTCCGACCTCTGCTTCGCCCTCGCCTCCAGG------------------------- 287 consensus_14565#2 TCCACCGGGGTACTTCCTGTTCAGTAGTATATAGAGTACCTTCCTGGCT----------- 338 consensus_14565#3 TTGGTCGTGTGCGTTGCTGTGTCGTGGTA-CCACCCCACCGTGGTACCGT---------- 293 * * ** * * * consensus_14565#0 TCCTCCCCCGATGCCCTAAATCCCCTATCTCCCTCCCTCCAGGCTCGAGAAGCTCTACTC 360 consensus_14565#4 -------------------------------------------CTCGAGAAGCTCTACTC 280 consensus_14565#1 -------------------------------------------CTCGAGAAGCTCTACTC 304 consensus_14565#2 ---------------------------------TCTGTATGTGCTCCTCAGTTAAAGTTT 365 consensus_14565#3 -----------------------------------------TACTTGTAAAG----AAGT 308 ** * consensus_14565#0 CGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCC-GACGCCGGCGAGCGCCAG--CA 417 consensus_14565#4 CGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCC-GACGCCGGCGAGCGCCAG--CA 337 consensus_14565#1 CGCCCGCTGCTTCGTCGGCCTCCGCATCCCCGACCCC-GACGCCGGCGAGCGCCAG--CA 361 consensus_14565#2 GTCTTGTTGTTTCTGTACACCACCTGTACTTACTTTAAGATGTCAGTTAGCATGAAATTA 425 consensus_14565#3 GGTCCGGTGTAGCATGAAATTAGAAAAAAATGAAT---GATTTGAATATGCCTCTTAATC 365 * ** * ** ** consensus_14565#0 TGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTC 477 consensus_14565#4 TGTCGACCTCGTCCTCCTTACCA------------------------------------- 360 consensus_14565#1 TGTCGACCTCGTCCTCCTTACCAACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTC 421 consensus_14565#2 GAAAAAAATGAATGATTTGAATAAAAAA-------------------------------- 453 consensus_14565#3 GTTGATATTTAGTTTCCAAAAAAAAAA--------------------------------- 392 * * * consensus_14565#0 TGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAA 537 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 TGGTTTTGTTGAGGTCGATAAGGATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAA 481 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 GCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATC 597 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 GCATGGTGTTATCCCAAACCCGGTACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATC 541 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 GTACTTGGAGAAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACT 657 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 GTACTTGGAGAAGAGGGGAGCAAAACTGCCTGATGGTCATATAACTGGAAAGATTGTACT 601 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 GCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTA 717 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 GCCAAATCCCAACTGCAGGCCTTCCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTA 661 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 CGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGG 777 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 CGATCAATGGAAAGATCTTAAAGCAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGG 721 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 TGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCAT 837 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 TGCATTCAGTGGAAGCAAAGGTGACATGCAAGATTCGTTACTCCAAAATCTACATTTCAT 781 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 TCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGG 897 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 TCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGG 841 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 TGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAG 957 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 TGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAG 901 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 ATCAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTC 1017 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 ATCAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTC 961 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 AAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGA 1077 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 AAGAGTGCAAATATTGTATTCACCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGA 1021 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 ATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAA 1137 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 ATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTTTCAGCCATTGCACTCGAA 1081 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 AAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGT 1197 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 AAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGT 1141 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 TGAAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTT 1257 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 TGAAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTT 1201 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 CTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTAC 1317 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 CTGTATGTGCTCCTCAGTTAAAGTTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTAC 1261 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 TTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATATGCCTCTTAA 1377 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 TTTAAGATGTCAGTTAGCATGAAATTAGAAAAAAATGAATGATTTGAATAAAAAACTTAA 1321 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1437 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 TCGTTGATATTTAGTTTCCAAAAAAAAAA------------------------------- 1350 consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 CCCTTGTCTTGCCGTTACGAACCAAAGGGCAAATTCTTTAAAACCTGCAGGATTAGCCCT 1497 consensus_14565#4 ------------------------------------------------------------ consensus_14565#1 ------------------------------------------------------------ consensus_14565#2 ------------------------------------------------------------ consensus_14565#3 ------------------------------------------------------------ consensus_14565#0 TTTAGGGA 1505 consensus_14565#4 -------- consensus_14565#1 -------- consensus_14565#2 -------- consensus_14565#3 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||