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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1967 fasta sequence
[TCCGCCTCCACTTAGCTTGAGACCGCTTTATTCCTCGCTCAGGGAGGAGGAGGAGAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT-GT-GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT-GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTACATTGTTATCCTTGTGAGGC-TTGCAGAAAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTCAAGGCACTGATTCGAGAATATATGCTTAATTTAGATGAAGAAAACTACAAAGAAGCAGTGGAGTCCTCGTATAAAGTCTCTGTTACTCCAGGGATCAGTGATGAGATCCGTCAGATAATTGATGATAGCTCCGCTGAAGTGAATTCATCTTCTTCAGATTTCTGGGTTTTAGTGGCTGCTTTGAAGGAATTTATTGCAAATGAGGGCAACGGTGAGCTACCTCTTGAGGGGACGATACCTGATATGACTTCACTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTG-CCTAGGCTGAAG-ACAGCTGCTGTTTCA-G-TAATG-AGTGAGATGGGTATGAACGGGGCACCTTTGTCTGA-AGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA-CCAAA-CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA-CCCCTTGAAACAGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK111534 [TCCGCCTCCACTTAGCTTGAGACCGCTTTATTCCTCGCTCAGGGAGGAGGAGGAGAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT GT GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTACATTGTTATCCTTGTGAGGC TTGCAGAAAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTCAAGGCACTGATTCGAGAATATATGCTTAATTTAGATGAAGAAAACTACAAAGAAGCAGTGGAGTCCTCGTATAAAGTCTCTGTTACTCCAGGGATCAGTGATGAGATCCGTCAGATAATTGATGATAGCTCCGCTGAAGTGAATTCATCTTCTTCAGATTTCTGGGTTTTAGTGGCTGCTTTGAAGGAATTTATTGCAAATGAGGGCAACGGTGAGCTACCTCTTGAGGGGACGATACCTGATATGACTTCACTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTG CCTAGGCTGAAG ACAGCTGCTGTTTCA G TAATG AGTGAGATGGGTATGAACGGGGCACCTTTGTCTGA AGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCCCTTGAAACAGT ]
[+] EMBL CB655439 [ TCAGCCATGAGGAGGAGAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT GT GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTAC ]
[+] EMBL CB677904 [ GAGAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT GT GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTACATTGTTATCCTTGTGAGGCTTTGCAG AAAATGGGCAGATGCACATG ]
[+] EMBL CB677867 [ GACAATGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAGGACCAAGTACGATCGCCAGCTCATGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTATGGAGTGTTACTGTTGGTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCATAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCATGAAAGCTAATATT GT GTTGGGTGCTGCACGTTCATATGGTCTAACTGGGCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAGAGTCAATTGATATAAATGATAAAG ]
[+] EMBL CF306486 [ GAAGGCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGC AATATT GTNGTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCATGGGGTTGAACTCAAGCAATTTGC ]
[+] EMBL CF326150 [ GCGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATTGGT GTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCATGGGGTTGAACTCAAGCAATTTGCAAAGTCAATT ]
[+] EMBL CB677866 [ gagcctgtGAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGGAGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCAAGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGAAGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTGTGCTTGGAGGAGTAGGGAGTGTTACTGTTGGTGATGGTTCCAAAGTTGAACAATCTGACATGGGAAACAATTTCCTGTTGGATGCACAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATT GT GTTGGGTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCAT GGGTTGAACTCAAGCAATTTGCAAAGTCAATTGATATGAATGATAAAGATCCTGTTGTGCACAAGCAC ]
[-] EMBL CB677905 [ CTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTG CCTAGGCTGAAG ACAGCTGCTGTTTCA G TAATG AGTGAGATGGGTATGAACGGGGCACCTTTGTCTGA AGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCCC TGAAAC ]
[-] EMBL CB677868 [ TGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTG CCTAGGCTGAAG ACAGCTGCTGTTTCA G TAATG AGTGAGATGGGTATGAACGGGGCACCTTTGTCTGA AGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATGGACATGGGAAAAGGTCAAAATA CCCC TGAAA ]
[+] EMBL BI812823 [ GTGCCCTAGGCTGAAGAACACTTGCTGTTTCACGTTAATGAAGTGAGATGGGTATGAACCGGGCACCCTTGTCTGAGAGACCTGATTACTGAAATGTGCCGGTTTGGGGGT CAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCCAGAAGTAATTAAGCTGGTCACCCAAACCAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACCAATCTCAAGTTTTGGCGTTAT ACATCCATCTGGTATAGAGCTTTTCGGAACCTCACCCCATTAATTACCTTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCCATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACCTGGGAAAAGGTCCCAATACCCCCTTGAAAAA AAAAA ]
[+] EMBL CF330698 [ ATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCCCTTGAAACAGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF315347 [ AAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCCCTTGAAACAGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA ]
[+] EMBL CF313386 [ AAGTAATTAAGCTGGTCA CCAAA CAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGAAAAGGTCAAAATA CCC ]
[+] EMBL CF299736 [ TTTATATTCAACGGGATTGATCACAAATGTCAAGTTTTGGCGTTATAACATGAATCTGGTATAGAGCTATGCGGAACCTCACCCATTTAATTACATTAGAGTTGCCCCATATTCTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGACAGATTTGGAATTATCATCGTATTAACATGGGAAAAGGTCTAAATA CCC ]
consensusID : consensus_14579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1140 fasta sequence
[CTCAAGCAATTTGCANAGNCAATTGATATAGNTGACANNNATNCTGNTGTGCACAGGCACACTCCCTACATTGTTATCCTTGCGAGGCTTGCAGANAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTNAAGGCACTGATTCGAGAACATATGCTTAATTTATGATGAAGAAAACTACAAAGAAGCAGTGGAGNCCTNGTATAAAGTCTCTGTTACTCCAGGGATCAGTGATGANATCCGTCAGATAATTGATGATAGNTCCGCTGAAGNGAATTCATCTTCTTCANATTTCTGGGTTTTAGTGGNTGCTTTGAAGGAATTTATTGCAAATGANGGCAACGGTGAGCTACCTNTTGAGGGGACGATACCTGATATGACTTCACTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCA-TGT-AAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTC-TATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCANA-GTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAAAATACTTCACCGATGAANACTACTGCTTTGCAATGAACTTCTATGNTCTGCTACGCGCTGGTGATCGACTTGCAGCCCAACTATAACAGATG-CCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGCTTCAGTAACGAGTGAAATGGGTATGAACGGGGCACCTTTGTCTGAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGGCTGCCTTGCATTGGCGGAGTGAGCATGCCCAAGAACGTGAATTGAAGCTGGGTGCAACCAAACACGTCTTGTGCCTGTTGCTGGGGAACATTGTGATGATTGCAACGGGGATTGATGCACAAATGCTGCAAGTTTNTGGCGTTGATGAACATGCAATGCTGGGTGATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGCGCATGAATAATCACTGGTCCATATAAAAAAAAAA]
[+] EMBL CA767263 [CTCAAGCAATTTGCANAGNCAATTGATATAGNTGACANNNATNCTGNTGTGCACAGGCACACTCCCTACATTGTTATCCTTGCGAGGCTTGCAGANAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTNAAGGCACTGATTCGAGAACATATGCTTAATTTATGATGAAGAAAACTACAAAGAAGCAGTGGAGNCCTNGTATAAAGTCTCTGTTACTCCAGGGATCAGTGATGANATCCGTCAGATAATTGATGATAGNTCCGCTGAAGNGAATTCATCTTCTTCANATTTCTGGGTTTTAGTGGNTGCTTTGAAGGAATTTATTGCAAATGANGGCAACGGTGAGCTACCTNTTGAGGGGACGATACCTGATATGACTTCACTTACTGAGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCTTGGAGCATCA TGT AAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTC TATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCANA GTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAAAATACTTCACCGATGAANACTACTGCTTTGCAATGAACTTCTATGNTCTGCTACGCGCTGGTGATCGACTTGCAGCCCAACTATAACAGATG CCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGCTTCAGTAACGAGTGAAA ]
[+] EMBL BQ909250 [ TCATTGTAAAAGGATATCTTGAA CGAATTGATAGAGACCCTGATTCGTATTTCACGGGCATACAT NACATTTTGC CNAATGCTAGAAAACTCAGAGGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAAAATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGCGCTGTTGATCGACTTGCAG CCAACTATAACAGATGCCCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTCTGAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGGCTGCCTTGCATTGGCGGAGTGAGCATGCCCAAGAACGTGAATTGAAGCTGGGTGCAACCAAACACGTCTTGTGCCTGTTGCTGGGGAACATTGTGATGATTGCAACGGGGATTGATGCACAAATGCTGCAAGTTTNTGGCGTTGATGAACATGCAATGCTGGGTGATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGCGCATGAATAATCACTGGTCCATATAAAAAAAAAA]
consensusID : consensus_14579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[GACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTTTGAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCACCAAACAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGGGAAGGTCAAAATACCCCTG]
[-] EMBL CB655440 [GACCCTGATTCTATTTCACGGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCAGTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATGAAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAGCCAACTATAACAGATGCCCTGGAATCTTTGAAAGGCTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTTTGAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGCTGCCTTCATTGGCGGAGTAGCATCCCAAGAAGTAATTAAGCTGGTCACCAAACAGTTTGTGCCTTTGCTGGGAACATTTATATTCAACGGGATTGATCACAAATCTCAAGTTTTGGCGTTATAACATCAATCTGGTATAGAGCTTTTCGGAACCTCACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATGAAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACATGGGGGAAGGTCAAAATACCCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14579#0 TCCGCCTCCACTTAGCTTGAGACCGCTTTATTCCTCGCTCAGGGAGGAGGAGGAGAAGGC 60
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 GAAGGCGAAGCAAAGCAAAACCTCGGAAGAGCGGCAGAGCCCACTCCACACGCGGAGAGG 120
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 AGACCACGCCGCCGCCGGAAGCCATGGCCGCCGCCACCGCCGCCGCCTTCGCGGAGCCCA 180
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 AGACCAAGTACGATCGCCAGCTCAGGATATGGGGTGATCAAGGACAGGCTGCACTGGAGA 240
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 AGGCTAGCATATGCTTGCTTACCTGTGGCCCTACAGGAACTGAAGCGATGAAGAACCTTG 300
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 TGCTTGGAGGAGTAGGGAGTGTTACTGTTGTTGATGGTTCCAAAGTTGAACAATCTGACA 360
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 TGGGAAACAATTTCCTGTTGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTAT 420
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 GTTCGTTCCTGCAAGAGCTGAATGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTC 480
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 TGGCTCTCATAGACACAAACCCTTCATTCTTTTCCCAATTTACCGTAGTCATTGCTACTC 540
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 AGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCAGGAAAGCAAATATTGTGT 600
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 TGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAGCGTTAAGGAGCACA 660
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 ATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAATCCATGGG 720
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 TTGAACTCAAGCAATTTGCAAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACA 780
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ----CTCAAGCAATTTGCANAGNCAATTGATATAGNTGACANNNATNCTGNTGTGCACAG 56
consensus_14579#0 AGCACACTCCCTACATTGTTATCCTTGTGAGGCTTGCAGAAAAATGGGCAGATGCACATG 840
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 GCACACTCCCTACATTGTTATCCTTGCGAGGCTTGCAGANAAATGGGCAGATGCACATGA 116
consensus_14579#0 ATGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTCAAGGCACTGATTCGAGAAT 900
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 TGGGCGCTTACCTTCGACTAGGCAAGAGAAAAATGAATTNAAGGCACTGATTCGAGAACA 176
consensus_14579#0 ATATGCTTAATTTAGATGAAGAAAACTACAAAGAAGCAGTGGAGTCCTCGTATAAAGTCT 960
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 TATGCTTAATTTATGATGAAGAAAACTACAAAGAAGCAGTGGAGNCCTNGTATAAAGTCT 236
consensus_14579#0 CTGTTACTCCAGGGATCAGTGATGAGATCCGTCAGATAATTGATGATAGCTCCGCTGAAG 1020
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 CTGTTACTCCAGGGATCAGTGATGANATCCGTCAGATAATTGATGATAGNTCCGCTGAAG 296
consensus_14579#0 TGAATTCATCTTCTTCAGATTTCTGGGTTTTAGTGGCTGCTTTGAAGGAATTTATTGCAA 1080
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 NGAATTCATCTTCTTCANATTTCTGGGTTTTAGTGGNTGCTTTGAAGGAATTTATTGCAA 356
consensus_14579#0 ATGAGGGCAACGGTGAGCTACCTCTTGAGGGGACGATACCTGATATGACTTCACTTACTG 1140
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 ATGANGGCAACGGTGAGCTACCTNTTGAGGGGACGATACCTGATATGACTTCACTTACTG 416
consensus_14579#0 AGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCT 1200
consensus_14579#2 ------------------------------------------------------------
consensus_14579#1 AGTACTATGTTAGCCTGCAAAAGATTTACCAAGCTAAGGCTGAATCTGACTGCCTTGCCT 476
consensus_14579#0 TGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCAC 1260
consensus_14579#2 -----------------------------------------GACCCTGATTCTATTTCAC 19
consensus_14579#1 TGGAGCATCATGTAAAGGATATCTTGAAGCGAATTGATAGAGACCCTGATTCTATTTCAC 536
*******************
consensus_14579#0 GGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCA 1320
consensus_14579#2 GGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCAGAGTCTGTAGGTACCGCA 79
consensus_14579#1 GGGCATACATAAAAACATTTTGCAAAAATGCTAGAAAACTCANAGTCTGTAGGTACCGCA 596
****************************************** *****************
consensus_14579#0 GTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATG 1380
consensus_14579#2 GTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAATATACTTCACCGATG 139
consensus_14579#1 GTATGGAGGAAGAGTTTAGCTCTCCTGTTCTTTCTGAAGTTCAAAAATACTTCACCGATG 656
********************************************* **************
consensus_14579#0 AAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAG 1440
consensus_14579#2 AAGACTACTGCTTTGCAATGAACTTCTATGTTCTGCTACGTGCTGTTGATCGACTTGCAG 199
consensus_14579#1 AANACTACTGCTTTGCAATGAACTTCTATGNTCTGCTACGCGCTGGTGATCGACTTGCAG 716
** *************************** ********* **** **************
consensus_14579#0 CC-AACTATAACAGATGCCCTGGAATCTTTGAAAGTGAGATTGATGAGGATGTGCCTAGG 1499
consensus_14579#2 CC-AACTATAACAGATGCCCTGGAATCTTTGAAAG------------------------G 234
consensus_14579#1 CCCAACTATAACAGATGCCCTGGAATCTTTGAAAG------------------------G 752
** ******************************** *
consensus_14579#0 CTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTCT 1559
consensus_14579#2 CTGAAGACAGCTGCTGTTTCAGTAATGAGTGAGATGGGTATGAACGGGGCACCTTTGTTT 294
consensus_14579#1 CTGAAGACAGCTGCTGCTTCAGTAACGAGTGAAATGGGTATGAACGGGGCACCTTTGTCT 812
**************** ******** ****** ************************* *
consensus_14579#0 GAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGG-CTGC 1618
consensus_14579#2 GAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGG-CTGC 353
consensus_14579#1 GAAGACCTGATTACTGAAATGTGCCGGTTTGGGGGTGCAGAGATTCATCCCGTGGGCTGC 872
******************************************************* ****
consensus_14579#0 CTT-CATTGGCGGAGT-AGCAT-CCCAAGAA---GTAATTAAGCTGGTC---ACCAAACA 1669
consensus_14579#2 CTT-CATTGGCGGAGT-AGCAT-CCCAAGAA---GTAATTAAGCTGGTC---ACCAAACA 404
consensus_14579#1 CTTGCATTGGCGGAGTGAGCATGCCCAAGAACGTGAATTGAAGCTGGGTGCAACCAAACA 932
*** ************ ***** ******** * * * ******* ********
consensus_14579#0 G--TTTGTGCCT-TTGCTGGG-AACATT----TATATTCAACGGG-ATTGAT-CACAAAT 1719
consensus_14579#2 G--TTTGTGCCT-TTGCTGGG-AACATT----TATATTCAACGGG-ATTGAT-CACAAAT 454
consensus_14579#1 CGTCTTGTGCCTGTTGCTGGGGAACATTGTGATGATTGCAACGGGGATTGATGCACAAAT 992
******** ******** ****** * * ******* ****** *******
consensus_14579#0 CT--CAAGTTTT-GGCGTTAT--AACAT-CAAT-CTGGT--ATAGAGCTTTTCGGAACCT 1770
consensus_14579#2 CT--CAAGTTTT-GGCGTTAT--AACAT-CAAT-CTGGT--ATAGAGCTTTTCGGAACCT 505
consensus_14579#1 GCTGCAAGTTTNTGGCGTTGATGAACATGCAATGCTGGGTGATAGAGCTTTTCGGAACCT 1052
******* ****** ***** **** **** *******************
consensus_14579#0 CACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATG 1830
consensus_14579#2 CACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGTGCAATG 565
consensus_14579#1 CACCCAATTAATTACATTAGAGTTGCCCCAGATTTTGTATTATGGCCTTCCGGCGCATGA 1112
***************************************************** ***
consensus_14579#0 AAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACAT 1890
consensus_14579#2 AAAATCACTTGTCCATATAAATGATCATTGTCAGATTTGGAATTATCATCGTATTTACAT 625
consensus_14579#1 ATAATCACTGGTCCATATAAAAAAAAAA-------------------------------- 1140
* ******* *********** * *
consensus_14579#0 GGGAAAAGGTCAAAATACCCCTTGAAACAGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1950
consensus_14579#2 GGGGGAAGGTCAAAATACCCCTG------------------------------------- 648
consensus_14579#1 ------------------------------------------------------------
consensus_14579#0 AAAAAAAAAAAAAAAAA 1967
consensus_14579#2 -----------------
consensus_14579#1 -----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||