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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2008 fasta sequence
[CCGTCTCCGGGATTTTAATTTCTTGGCACCTCGCCTCAGCATATTCCATGTCCCCTCTCCATCCGCCCCACGCGCCCACTTTGACCGACCCATCGATCGATCACGATATTTAGTAGTAGTAGTAGTATTACAAATCCAGCAAGCGATCCCAATATCCCATTCCCAAAACCCCAATCCATCCTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAGAGGAGGAGGAGGAGGTGCCAGCCATGGTGGACCGGATCGGCGCCGCGTGGTGGTGCGCGTGCGCCGTGGGGATGCTGGTGGTGGGGGCGTGCCTCGCCGGGGAGACCAGCGAGTACCGGCGCCAGCTCGGCTCCGCCGTCGACATGCCGCTCGACGCCGACGTCTTCCGCGCCCCGCCCGGCCGCAATGCGCCCCAGCAGGTTCATATCACACAAGGAAATCATGATGGCACTGCCATGATAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGGAGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACACCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGAATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA-CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCAAAAAAAAAAAAAAGA]
[+] EMBL AK071643 [CCGTCTCCGGGATTTTAATTTCTTGGCACCTCGCCTCAGCATATTCCATGTCCCCTCTCCATCCGCCCCACGCGCCCACTTTGACCGACCCATCGATCGATCACGATATTTAGTAGTAGTAGTAGTATTACAAATCCAGCAAGCGATCCCAATATCCCATTCCCAAAACCCCAATCCATCCTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAGAGGAGGAGGAGGAGGTGCCAGCCATGGTGGACCGGATCGGCGCCGCGTGGTGGTGCGCGTGCGCCGTGGGGATGCTGGTGGTGGGGGCGTGCCTCGCCGGGGAGACCAGCGAGTACCGGCGCCAGCTCGGCTCCGCCGTCGACATGCCGCTCGACGCCGACGTCTTCCGCGCCCCGCCCGGCCGCAATGCGCCCCAGCAGGTTCATATCACACAAGGAAATCATGATGGCACTGCCATGATAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGGAGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACACCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGAATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGGAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACT ]
[+] EMBL AK059025 [ AAGGAAATCATGATGGCACTGCCATGATAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGGAGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACACCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGAATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTG ]
[+] EMBL CB680829 [ TAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGGAGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACACCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGAATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGA ]
[+] EMBL CF196242 [ TTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACNAAGTTGACCTNNNGTTTGCAGGACATGT ]
[+] EMBL CA882801 [ TGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATAC ]
[+] EMBL CA923296 [ TGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACAAGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCTATTCAAGCCATAC ]
[+] EMBL CA882881 [ TGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACAAGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCTATTCAAGCCATAC ]
[+] EMBL CF322748 [ GGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCATAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTANCATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCC ]
[+] EMBL AK060314 [ ATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGT ]
[-] EMBL CB680830 [ AAGTATACTCCTCAGTACAAGTGGC TGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCAAAAAAAAAAAAAAGA]
[-] EMBL BI306474 [ GGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGCTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTGCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGG ]
consensusID : consensus_14583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[AAACTTGAACGGACGACCGACAGACCTGGACACTCGGACCTTCAGGGACGTCGAGACTTACGGGACAACGACCATCCTGGACAGTCAAGAAACAGGACGACAACGACGTAACTACAACGGTGGAAACCGCAACCAGGACGGCAACGACTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGACCGACGGATGAATCTTTGGACGACTACCCAGTGATCTGAGTCGTTACGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGNCCTCCCGGTTCAGGCCGTTCGTGATCTAGGTGGTTACTTTCTCCGCTTCCAGCTCCCTCCTGGGCCGTGTGCTGCTTGTGTATAAAAAANCCCCAGCTCACGTGCAGCGAAAGGAAAAAAAAGCTGAAAAATTGCCAGTTGATACTGGATAGGCTGGTGTACTTTCGTACTCCTTTAAATGTTGAATAACACATTGGTTCTGGGCCCTTGCAACTNGCATTGGACAAAAAAAAAAAA]
[+] EMBL BQ172736 [AAACTTGAACGGACGACCGACAGACCTGGACACTCGGACCTTCAGGGACGTCGAGACTTACGGGACAACGACCATCCTGGACAGTCAAGAAACAGGACGACAACGACGTAACTACAACGGTGGAAACCGCAACCAGGACGGCAACGACTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGACCGACGGATGAATCTTTGGACGACTACCCAGTGATCTGAGTCGTTACGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGNCCTCCCGGTTCAGGCCGTTCGTGATCTAGGTGGTTACTTTCTCCGCTTCCAGCTCCCTCCTGGGCCGTGTGCTGCTTGTGTATAAAAAANCCCCAGCTCACGTGCAGCGAAAGGAAAAAAAAGCTGAAAAATTGCCAGTTGATACTGGATAGGCTGGTGTACTTTCGTACTCCTTTAAATGTTGAATAACACATTGGTTCTGGGCCCTTGCAACTNGCATTGGACAAAAAAAAAAAA]
consensusID : consensus_14583#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[ATCCTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAAAAGGAGGAGGAGGAGGGTGCCAGCCATTGGTGGACCCGANTCGGCCCCCCCTTGGTGGTTCCCCTTCCCCCCTGGGGATTCTTGTTGGTGGGGGCTNNCCTTTCCCGGGGGACCAANGAGTTCCGGGGCCAGTTTGGGTTCCCCCNNNAAATTGCCGTTTNAACCCNAATTTTTTCGGGCCCCCCCCGGCCCAAATGGCCCCCCCNGGGTTTTTTTTCC]
[+] EMBL AU181279 [ATCCTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAAAAGGAGGAGGAGGAGGGTGCCAGCCATTGGTGGACCCGANTCGGCCCCCCCTTGGTGGTTCCCCTTCCCCCCTGGGGATTCTTGTTGGTGGGGGCTNNCCTTTCCCGGGGGACCAANGAGTTCCGGGGCCAGTTTGGGTTCCCCCNNNAAATTGCCGTTTNAACCCNAATTTTTTCGGGCCCCCCCCGGCCCAAATGGCCCCCCCNGGGTTTTTTTTCC]
consensusID : consensus_14583#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 235 fasta sequence
[GGGTGGTT-CTTTCTCCGCT-CCA-GCT-CCCT-CGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG]
[-] EMBL CB966298 [ GGTGGTT CTTTCTCCGCT CCA GCT CCCT CGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG]
[-] EMBL BU673779 [ GGTGGTT CTTTCTCCGCT CCA GCT CCCT CGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG]
[-] EMBL BU673043 [ GGTGGTT CTTTCTCCGCT CCA GCT CCCT CGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG]
[-] EMBL CB965848 [gctgcGTTGCTCTCCCCGCTCCCACGCTGCCCTGCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 CCGTCTCCGGGATTTTAATTTCTTGGCACCTCGCCTCAGCATATTCCATGTCCCCTCTCC 60
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 ATCCGCCCCACGCGCCCACTTTGACCGACCCATCGATCGATCACGATATTTAGTAGTAGT 120
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 AGTAGTATTACAAATCCAGCAAGCGATCCCAATATCCCATTCCCAAAACCCCAATCCATC 180
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 CTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAG 240
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 AGGAGGAGGAGGAGGTGCCAGCCATGGTGGACCGGATCGGCGCCGCGTGGTGGTGCGCGT 300
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 GCGCCGTGGGGATGCTGGTGGTGGGGGCGTGCCTCGCCGGGGAGACCAGCGAGTACCGGC 360
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 GCCAGCTCGGCTCCGCCGTCGACATGCCGCTCGACGCCGACGTCTTCCGCGCCCCGCCCG 420
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 GCCGCAATGCGCCCCAGCAGGTTCATATCACACAAGGAAATCATGATGGCACTGCCATGA 480
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 TAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGG 540
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 AGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACA 600
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 CCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACT 660
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 ATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTG 720
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 GCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGA 780
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 ATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGG 840
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 ATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAA 900
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 GATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGA 960
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 TAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACC 1020
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 CCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCAT 1080
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 CTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACA 1140
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 AGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGC 1200
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 TATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTACATGGAAGGTGAAAGCATGA 1260
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 GAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATG 1320
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ------------------------------------------------------------
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 TTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCC 1380
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ----------------------------------------------------------AA 2
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 AGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAA 1440
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 ACTTGAACGGACGACCGACAGACCTGGACACTCGGACCTTCAGGGACGTCGAGACTTACG 62
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 ACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGG 1500
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 GGACAACGACCATCCTGGACAGTCAAGAAACAGGACGACAACGACGTAACTACAACGGTG 122
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 AGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGT 1560
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 GAAACCGCAACCAGGACGGCAACGACTGTGGCGGCTGACTCCATGTGGTTCACCAACAGA 182
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 GGCACCGCAACCAGGACGGCAACG-CTGTGGCGGCTGACTCCATGTGGTTCACCAACAGA 1619
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 TACTGGCAGACCGACGGATGAATCTTTGGACGACTACCCAGTGATCTGAGTCGTTACGTA 242
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 TACTGGCAG-CCGACGGATGAATCTTTGGACGACT-CCCAGTGATCTGAGTCGTT-CGTA 1676
consensus_14583#2 ------------------------------------------------------------
consensus_14583#1 CATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTTGTGTTGTGGTTCTTCTACGTGAA 302
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 CATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTT-GTGTTGTGGTTCTTCTACGTGAA 1735
consensus_14583#2 -------------------------------ATCCTCGGAGCACGCCACCTTCACGAGGA 29
consensus_14583#1 TAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGNCCTCCCGGTTCAGGC 362
consensus_14583#3 ------------------------------------------------------------
consensus_14583#0 TAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCC--TCCGGTTCAGGC 1793
consensus_14583#2 AGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAAAAGGAGGAGGAG--GAGGGTGCCAGC 87
consensus_14583#1 CGTTCGTGATCTAGGTGGTTACTTTCTCCGCTTCCAGCTCCCTCCTGGGCCGTGTGCTGC 422
consensus_14583#3 ------------GGGTGGTT-CTTTCTCCGCT-CCAGCTCCCTCGTGG-CCGTGTGCTGC 45
consensus_14583#0 G--TCGTGATCTAGGTGGTT-CTTTCTCCGCT-CCAGCTCCCTCGTGG-CCGTGTGCTGC 1848
consensus_14583#2 CATTGGTGG---ACCCGANTCGGCCCCCCCTTGGTGGTTCCCCTTCCCCCCTGGGGATTC 144
* * * ** * * **** ** * * * *
consensus_14583#1 TTGTGTATAAAAAANCCCCAGCTCACGTGCAGCGAAAGGAAAAAAAAGCTGAAAAATTGC 482
consensus_14583#3 TTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGC 105
consensus_14583#0 TTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGC 1908
consensus_14583#2 TTGT---TGGTGGGGGCTNNCCTTTC---CCGGGGGACCAANGAGTTCCGGGGCCAGTTT 198
**** * * ** * * * * * ** * * * *
consensus_14583#1 CAGTTGATACTGGATAGGCTGGTGTACTTTCGTACTCCTTTAAATGTTGAATAA-CACAT 541
consensus_14583#3 GAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACAT 165
consensus_14583#0 GAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACAT 1968
consensus_14583#2 GGGTTCCCCCNNNAAATTGCCGTTTNAACCCNAATTTTTTCGGGCCCCCCCCGGCCCAAA 258
*** * * * ** * * * * * * *
consensus_14583#1 TGGTTCTGGGCCCTTGCAACTNGCATTGGACAAAAAAAAAAAA----------------- 584
consensus_14583#3 TGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTG 225
consensus_14583#0 TGGTTTCGTGGCGTTGCGACTTGCAAAAAAAAAAAAAAGA-------------------- 2008
consensus_14583#2 TGGCCCCCCCNGGGTTTTTTTTCC------------------------------------ 282
*** * * *
consensus_14583#1 ----------
consensus_14583#3 GCAAGCTGTG 235
consensus_14583#0 ----------
consensus_14583#2 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||