These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1198 fasta sequence [AGCAGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTCTTTTTGTATCATTGATCATCTTTCAGGCTGAAGTTAAGCTACAGCCGAAACGGTCAATTTATATCGGGTAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF308558 [AGCAGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCATGGCCCACGCGTGGGGCAAGTAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGT ] [+] EMBL AK106059 [ AGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTATGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTCTTTTTGTATCATTGATCATCTTTCAGGCTGAAGTTAA ] [+] EMBL CB668148 [ CCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTT ] [+] EMBL CB665367 [ CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCT ] [-] EMBL CB665368 [ TTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTCTTTTTGTATC ] [+] EMBL BE230622 [ GAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCAACGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGTTGATTTATCAATATTGCACTG ] [+] EMBL BE229984 [ CTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCAACGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGTTGATTTATCAATATTGCACTGT ] [+] EMBL AK059436 [ GAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTC ] [-] EMBL CF308557 [ CAAGAATCCCCCTTAGAAGATGACTATTTTTTCGCTGCCCTGCCTGTTGTTCAAAAAAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCACCCGGTTTTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGTTTAACCAGATGAAAGATTAAGAAAATAGCCCGCATTTTGAATTCCAATAAGATTATTTTGTTTGCCCATGTTAACTTCCCGGTTACGATTAGATGTATCCTCATTTACCCATTTGTCAAAGTAGCTTAGATAGCTCCAGACCATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCCCTGTCTTTTTGTATCATTGATCATCTTTCAGGCTGAAGTTAAGCTACAGCCGAAACGGTCAATTTATATCGGGTAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1167 fasta sequence [CGTGCCCCCTCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGACGGCCACTACATGGTGTGCAAGATCGCCGAGGTGAGAGATCGATCGATCGAGATGGATTCCACCTCGTGCTTTGCGCTTGCTTGATTGGTGGGGAACTTTGGGTTTGCTTCTGCAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA-CGATGATAAAGGCCATCAA-GATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTG-AAGCAAGTGGGGATTTATCAATATTGCACTGTCTTTTTGTATCAAAAAAAAAGA] [+] EMBL CB666818 [CGTGCCCCCTCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGACGGCCACTACATGGTGTGCAAGATCGCCGAGGTGAGAGATCGATCGATCGAGATGGATTCCACCTCGTGCTTTGCGCTTGCTTGATTGGTGGGGAACTTTGGGTTTGCTTCTGCAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCATCAA GATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCG ] [+] EMBL CF291978 [ GGCGGTGAAGGAGCTCCTCCCCGGTTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTGCCGGCGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAGCTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGG ] [-] EMBL CB668149 [ GGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCATCAA GATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGGGATTTATCAATATTGCACTGTCTTTTTGTATCAAAAAAAAAG ] [-] EMBL CB666819 [ GTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGAGGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCATCAA GATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTTTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTG AAGCAAGAGGGGATTTATCAATATTGCACTGTCTTTTTGTGTCAAAAAAAAAGA] [+] EMBL BE230646 [ GAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCCTCAA GATGAACATCACTGATGAGTGGTCCAACGAGGAGAAGCAGCGGGAGACTTGCCGTACCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCATAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCATAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCT ] [+] EMBL BE230396 [ GAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCATCAA GATGAACATCACTGATGAGTGGTCCAACGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAA ] [+] EMBL BE230395 [ gcctgggtcGATGTGTGGAGCCAAAATATGGGTCAAGAACTATGAACATCAATGATGAGTGGGCCAACGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAA ] consensusID : consensus_14605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGGCATGGCGAAAGCCCCCACGGCCACGCGTGGGGCAAGGATGGCCACTACATGGTGTGCAAGATCGCCGAAGGTTTCCTGACGAATGATGTTGTGACTGGGGTGAATGAGCTCCTCCCCCGGTTGGGCCGGGGCGAACTCGCGGAAACGTGCTCCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCCAAACCCCCTCCACTTCGCCGACACCCCCCGGGAAATGCCAATTCAACTTTCCCCCCGGAATTTGCTCCAAAACCAACCGGTTAAAAAGAAACTTTTTTTTTTGTTCGGAATCCAATTTATAAATTTATACCCCTATGGCGCTTCCAAAGAAATCCCACTCNATTTTTCATTTTTAATTCCTACCCCC] [+] EMBL AA754180 [CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGGCATGGCGAAAGCCCCCACGGCCACGCGTGGGGCAAGGATGGCCACTACATGGTGTGCAAGATCGCCGAAGGTTTCCTGACGAATGATGTTGTGACTGGGGTGAATGAGCTCCTCCCCCGGTTGGGCCGGGGCGAACTCGCGGAAACGTGCTCCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCCAAACCCCCTCCACTTCGCCGACACCCCCCGGGAAATGCCAATTCAACTTTCCCCCCGGAATTTGCTCCAAAACCAACCGGTTAAAAAGAAACTTTTTTTTTTGTTCGGAATCCAATTTATAAATTTATACCCCTATGGCGCTTCCAAAGAAATCCCACTCNATTTTTCATTTTTAATTCCTACCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14605#0 AGCAGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCG 60 consensus_14605#1 -------------------------------CGTGCCCCCTCTCCTCCTCGTCGTCGTCG 29 consensus_14605#2 -------------------------CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCG 35 ***** *** ******************* consensus_14605#0 TCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACA 120 consensus_14605#1 TCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGACGGCCACTACA 89 consensus_14605#2 TCGCCGCGGGCATGGCGAAAGCCCCCACGGCC-ACGCGTGGGGCAAGGATGGCCACTACA 94 ********* ******** ************* **************** ********** consensus_14605#0 TGGTGTGCAAGATCGCCGAGG--------------------------------------- 141 consensus_14605#1 TGGTGTGCAAGATCGCCGAGGTGAGAGATCGATCGATCGAGATGGATTCCACCTCGTGCT 149 consensus_14605#2 TGGTGTGCAAGATCGCCGAAG--------------------------------------- 115 ******************* * consensus_14605#0 ----------------------------------------------GTTTCCTGACGAAG 155 consensus_14605#1 TTGCGCTTGCTTGATTGGTGGGGAACTTTGGGTTTGCTTCTGCAGGGTTTCCTGACGAAG 209 consensus_14605#2 ----------------------------------------------GTTTCCTGACGAAT 129 ************* consensus_14605#0 GAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAA 215 consensus_14605#1 GAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAA 269 consensus_14605#2 GATGTTGTGACTGGGGTGAATGAGCTCCTCCCCCGGTTGGGCCGGGGCGAACTCGCGGAA 189 ** * * *** * ****** ************ *** ** * * ***** ********* consensus_14605#0 ACGTGCTC-GTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTC-GAGCCCCCTCCACT 273 consensus_14605#1 ACGTGCTC-GTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTC-GAGCCCCCTCCACT 327 consensus_14605#2 ACGTGCTCCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCCAAACCCCCTCCACT 249 ******** ************************************ * *********** consensus_14605#0 TCGCCGACACCCCC-GGCGACTGCCAGTTCAACTA--CGCCCGGGATT-GCCACAACACA 329 consensus_14605#1 TCGCCGACACCCCC-GGCGACTGCCAGTTCAACTA--CGCCCGGGATT-GCCACAACACA 383 consensus_14605#2 TCGCCGACACCCCCCGGGAAATGCCAATTCAACTTTCCCCCCGGAATTTGCTCCAAAACC 309 ************** ** * ***** ******* * ***** *** ** *** ** consensus_14605#0 AAC-GGTGAGAAGGACA----TGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGC 384 consensus_14605#1 AAC-GGTGAGAAGGACA----TGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGC 438 consensus_14605#2 AACCGGTTAAAAAGAAACTTTTTTTTTTGTTCGGAAT--CCAATTTATAAATTTATACCC 367 *** *** * ** ** * * * * ** ***** *** ** * * * * consensus_14605#0 TCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCG 444 consensus_14605#1 TCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCG 498 consensus_14605#2 CTATGGCGCTTCCAAAGAAATCCCACTCNATTTTTCATTTTTAATTCCTACCCCC----- 422 ** *** ** * * * ** *** * * * consensus_14605#0 TCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCA 504 consensus_14605#1 TCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCA 558 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 TCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCA 564 consensus_14605#1 TCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCA 618 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 TTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCA 624 consensus_14605#1 TTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCA 678 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 AGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCC 684 consensus_14605#1 AGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCC 738 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 GGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGT 744 consensus_14605#1 GGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGT 798 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 ACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTG 804 consensus_14605#1 ACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTG 858 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 TTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCT 864 consensus_14605#1 TTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCT 918 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 TCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAA 924 consensus_14605#1 TCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAA 978 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 GAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCAC 984 consensus_14605#1 GAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCAC 1038 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 GGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGA 1044 consensus_14605#1 GGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGA 1098 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 ACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTCTTTTTGTATCA 1104 consensus_14605#1 ACATTGTAATTCCTG-AAGCAAGTGGGGATTTATCAATATTGCACTGTCTTTTTGTATCA 1157 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 TTGATCATCTTTCAGGCTGAAGTTAAGCTACAGCCGAAACGGTCAATTTATATCGGGTAG 1164 consensus_14605#1 AAAAAAAAGA-------------------------------------------------- 1167 consensus_14605#2 ------------------------------------------------------------ consensus_14605#0 ATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1198 consensus_14605#1 ---------------------------------- consensus_14605#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||