cluster # 14605

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Oryza sativa
cluster # 14605 cluster # 14605 Sequences # 17 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14605#0 length = 1198 sequences # 9

consensus_14605#1 length = 1167 sequences # 7
consensus_14605#2 length = 422 sequences # 1

consensusID : consensus_14605#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1198
fasta sequence

                              [AGCAGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTCTTTTTGTATCATTGATCATCTTTCAGGCTGAAGTTAAGCTACAGCCGAAACGGTCAATTTATATCGGGTAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF308558             [AGCAGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCATGGCCCACGCGTGGGGCAAGTAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK106059             [   AGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTATGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTCTTTTTGTATCATTGATCATCTTTCAGGCTGAAGTTAA                                                                    ]
[+] EMBL CB668148             [                        CCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTT                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB665367             [                         CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACATGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCT                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB665368             [                                                                                                                                                                                                                                                                                                                            TTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTCTTTTTGTATC                                                                                               ]
[+] EMBL BE230622             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCAACGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGTTGATTTATCAATATTGCACTG                                                                                                           ]
[+] EMBL BE229984             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTACAACGAGGACGTGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCAACGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGTTGATTTATCAATATTGCACTGT                                                                                                          ]
[+] EMBL AK059436             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTC                                                                                                         ]
[-] EMBL CF308557             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAAGAATCCCCCTTAGAAGATGACTATTTTTTCGCTGCCCTGCCTGTTGTTCAAAAAAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCACCCGGTTTTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGTTTAACCAGATGAAAGATTAAGAAAATAGCCCGCATTTTGAATTCCAATAAGATTATTTTGTTTGCCCATGTTAACTTCCCGGTTACGATTAGATGTATCCTCATTTACCCATTTGTCAAAGTAGCTTAGATAGCTCCAGACCATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCCCTGTCTTTTTGTATCATTGATCATCTTTCAGGCTGAAGTTAAGCTACAGCCGAAACGGTCAATTTATATCGGGTAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14605#0
AGCAGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCG
TCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACA
TGGTGTGCAAGATCGCCGAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGC
TCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGC
GGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGT
TCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAG
CGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGA
GCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACG
TCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTC
ATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACG
TGAGCACGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGA
AGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGA
GTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATG
ACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGC
TTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATA
GAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTAT
CTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGT
CAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCA
ATATTGCACTGTCTTTTTGTATCATTGATCATCTTTCAGGCTGAAGTTAAGCTACAGCCG
AAACGGTCAATTTATATCGGGTAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14605#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1167
fasta sequence

                              [CGTGCCCCCTCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGACGGCCACTACATGGTGTGCAAGATCGCCGAGGTGAGAGATCGATCGATCGAGATGGATTCCACCTCGTGCTTTGCGCTTGCTTGATTGGTGGGGAACTTTGGGTTTGCTTCTGCAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA-CGATGATAAAGGCCATCAA-GATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTG-AAGCAAGTGGGGATTTATCAATATTGCACTGTCTTTTTGTATCAAAAAAAAAGA]

[+] EMBL CB666818             [CGTGCCCCCTCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGACGGCCACTACATGGTGTGCAAGATCGCCGAGGTGAGAGATCGATCGATCGAGATGGATTCCACCTCGTGCTTTGCGCTTGCTTGATTGGTGGGGAACTTTGGGTTTGCTTCTGCAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCATCAA GATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCG                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF291978             [                                                                                                                                                                                                                            GGCGGTGAAGGAGCTCCTCCCCGGTTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCCGGTGCCGGCGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACTACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCAACAGCTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB668149             [                                                                                                                                                                                                                                                                                                                                                                                                          GGACATGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCATCAA GATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTGTAAGCAAGTGGGGATTTATCAATATTGCACTGTCTTTTTGTATCAAAAAAAAAG ]
[-] EMBL CB666819             [                                                                                                                                                                                                                                                                                                                                                                                                                  GTGTGGTCGGAGCGATCAACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCGTCGGCGAGGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCATCAA GATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTTTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGAACATTGTAATTCCTG AAGCAAGAGGGGATTTATCAATATTGCACTGTCTTTTTGTGTCAAAAAAAAAGA]
[+] EMBL BE230646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCCTCAA GATGAACATCACTGATGAGTGGTCCAACGAGGAGAAGCAGCGGGAGACTTGCCGTACCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCATAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCATAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCT                                                                                                                                                                            ]
[+] EMBL BE230396             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAATTCTACAACGAGGACGTGAGCA CGATGATAAAGGCCATCAA GATGAACATCACTGATGAGTGGTCCAACGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAA                                                                                                                                                                ]
[+] EMBL BE230395             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gcctgggtcGATGTGTGGAGCCAAAATATGGGTCAAGAACTATGAACATCAATGATGAGTGGGCCAACGAGGAGAAGCAGTGGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAA                                                                                                                                                                ]




>consensus_14605#1
CGTGCCCCCTCTCCTCCTCGTCGTCGTCGTCGCCGCGGCCATGGCGAGAGCCCCCACGGC
CCACGCGTGGGGCAAGGACGGCCACTACATGGTGTGCAAGATCGCCGAGGTGAGAGATCG
ATCGATCGAGATGGATTCCACCTCGTGCTTTGCGCTTGCTTGATTGGTGGGGAACTTTGG
GTTTGCTTCTGCAGGGTTTCCTGACGAAGGAGGCGGCGACGGCGGTGAAGGAGCTCCTCC
CCGGGTGGGCCGGCGGCGAGCTCGCGGAAACGTGCTCGTGGGCGGACACCGAGCGGTTCC
GGTACCGGTGGTCGAGCCCCCTCCACTTCGCCGACACCCCCGGCGACTGCCAGTTCAACT
ACGCCCGGGATTGCCACAACACAAACGGTGAGAAGGACATGTGTGTGGTCGGAGCGATCA
ACAACTACACCAACGCGCTCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGA
TGTTCTTGGCACACTTCGTCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAG
ATCTTGGTGGCAACACCATCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACG
TGTGGGATGTGAACGTCATTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCA
CGATGATAAAGGCCATCAAGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGT
GGGAGACTTGCCGTAGCCGGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAA
AGCTCGCGTGCAAAGCGTACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATT
TCTTCGCTGCCCTGCCTGTTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTG
CAATACTCAACCGGATCTTCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATT
AAACAGATGAAAGATTAAGAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTT
TGACCATGTTAACTTCACGGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGT
AGCTTAGATAGCTACAGAACATTGTAATTCCTGAAGCAAGTGGGGATTTATCAATATTGC
ACTGTCTTTTTGTATCAAAAAAAAAGA

consensusID : consensus_14605#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGGCATGGCGAAAGCCCCCACGGCCACGCGTGGGGCAAGGATGGCCACTACATGGTGTGCAAGATCGCCGAAGGTTTCCTGACGAATGATGTTGTGACTGGGGTGAATGAGCTCCTCCCCCGGTTGGGCCGGGGCGAACTCGCGGAAACGTGCTCCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCCAAACCCCCTCCACTTCGCCGACACCCCCCGGGAAATGCCAATTCAACTTTCCCCCCGGAATTTGCTCCAAAACCAACCGGTTAAAAAGAAACTTTTTTTTTTGTTCGGAATCCAATTTATAAATTTATACCCCTATGGCGCTTCCAAAGAAATCCCACTCNATTTTTCATTTTTAATTCCTACCCCC]

[+] EMBL AA754180             [CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGGCATGGCGAAAGCCCCCACGGCCACGCGTGGGGCAAGGATGGCCACTACATGGTGTGCAAGATCGCCGAAGGTTTCCTGACGAATGATGTTGTGACTGGGGTGAATGAGCTCCTCCCCCGGTTGGGCCGGGGCGAACTCGCGGAAACGTGCTCCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCCAAACCCCCTCCACTTCGCCGACACCCCCCGGGAAATGCCAATTCAACTTTCCCCCCGGAATTTGCTCCAAAACCAACCGGTTAAAAAGAAACTTTTTTTTTTGTTCGGAATCCAATTTATAAATTTATACCCCTATGGCGCTTCCAAAGAAATCCCACTCNATTTTTCATTTTTAATTCCTACCCCC]




>consensus_14605#2
CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCGTCGCCGCGGGCATGGCGAAAGCCCC
CACGGCCACGCGTGGGGCAAGGATGGCCACTACATGGTGTGCAAGATCGCCGAAGGTTTC
CTGACGAATGATGTTGTGACTGGGGTGAATGAGCTCCTCCCCCGGTTGGGCCGGGGCGAA
CTCGCGGAAACGTGCTCCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCCAAACC
CCCTCCACTTCGCCGACACCCCCCGGGAAATGCCAATTCAACTTTCCCCCCGGAATTTGC
TCCAAAACCAACCGGTTAAAAAGAAACTTTTTTTTTTGTTCGGAATCCAATTTATAAATT
TATACCCCTATGGCGCTTCCAAAGAAATCCCACTCNATTTTTCATTTTTAATTCCTACCC
CC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14605#0      AGCAGAGAAGCAGAGCAACCATGGCCGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCG 60
consensus_14605#1      -------------------------------CGTGCCCCCTCTCCTCCTCGTCGTCGTCG 29
consensus_14605#2      -------------------------CGCGCGCGTGCTCCCCCTCCTCCTCGTCGTCGTCG 35
                                                      ***** *** *******************

consensus_14605#0      TCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGAGGGCCACTACA 120
consensus_14605#1      TCGCCGCGGCCATGGCGAGAGCCCCCACGGCCCACGCGTGGGGCAAGGACGGCCACTACA 89
consensus_14605#2      TCGCCGCGGGCATGGCGAAAGCCCCCACGGCC-ACGCGTGGGGCAAGGATGGCCACTACA 94
                       ********* ******** ************* **************** **********

consensus_14605#0      TGGTGTGCAAGATCGCCGAGG--------------------------------------- 141
consensus_14605#1      TGGTGTGCAAGATCGCCGAGGTGAGAGATCGATCGATCGAGATGGATTCCACCTCGTGCT 149
consensus_14605#2      TGGTGTGCAAGATCGCCGAAG--------------------------------------- 115
                       ******************* *                                       

consensus_14605#0      ----------------------------------------------GTTTCCTGACGAAG 155
consensus_14605#1      TTGCGCTTGCTTGATTGGTGGGGAACTTTGGGTTTGCTTCTGCAGGGTTTCCTGACGAAG 209
consensus_14605#2      ----------------------------------------------GTTTCCTGACGAAT 129
                                                                     ************* 

consensus_14605#0      GAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAA 215
consensus_14605#1      GAGGCGGCGACGGCGGTGAAGGAGCTCCTCCCCGGGTGGGCCGGCGGCGAGCTCGCGGAA 269
consensus_14605#2      GATGTTGTGACTGGGGTGAATGAGCTCCTCCCCCGGTTGGGCCGGGGCGAACTCGCGGAA 189
                       ** *  * *** * ****** ************ *** ** * * ***** *********

consensus_14605#0      ACGTGCTC-GTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTC-GAGCCCCCTCCACT 273
consensus_14605#1      ACGTGCTC-GTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTC-GAGCCCCCTCCACT 327
consensus_14605#2      ACGTGCTCCGTGGGCGGACACCGAGCGGTTCCGGTACCGGTGGTCCAAACCCCCTCCACT 249
                       ******** ************************************  * ***********

consensus_14605#0      TCGCCGACACCCCC-GGCGACTGCCAGTTCAACTA--CGCCCGGGATT-GCCACAACACA 329
consensus_14605#1      TCGCCGACACCCCC-GGCGACTGCCAGTTCAACTA--CGCCCGGGATT-GCCACAACACA 383
consensus_14605#2      TCGCCGACACCCCCCGGGAAATGCCAATTCAACTTTCCCCCCGGAATTTGCTCCAAAACC 309
                       ************** **  * ***** *******   * ***** *** **  *** ** 

consensus_14605#0      AAC-GGTGAGAAGGACA----TGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGC 384
consensus_14605#1      AAC-GGTGAGAAGGACA----TGTGTGTGGTCGGAGCGATCAACAACTACACCAACGCGC 438
consensus_14605#2      AACCGGTTAAAAAGAAACTTTTTTTTTTGTTCGGAAT--CCAATTTATAAATTTATACCC 367
                       *** *** * ** ** *    * * * ** *****     ***    ** *   *  * *

consensus_14605#0      TCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCG 444
consensus_14605#1      TCGAGGACTCATCAAGTCCATATGATCCAACCGAGAGCTTGATGTTCTTGGCACACTTCG 498
consensus_14605#2      CTATGGCGCTTCCAAAGAAATCCCACTCNATTTTTCATTTTTAATTCCTACCCCC----- 422
                           **      ***    **   *  * *        **    *** *  * *      

consensus_14605#0      TCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCA 504
consensus_14605#1      TCGGCGACGTTCACCAGCCTCTCCACTGCGGCCACGTCAAAGATCTTGGTGGCAACACCA 558
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      TCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCA 564
consensus_14605#1      TCATCGTCCATTGGTACACAAGGAAGAGCAACCTTCATCACGTGTGGGATGTGAACGTCA 618
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      TTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCA 624
consensus_14605#1      TTGAAACGGCCTTGAAGGAATTCTACAACGAGGACGTGAGCACGATGATAAAGGCCATCA 678
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      AGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCC 684
consensus_14605#1      AGATGAACATCACTGATGAGTGGTCCACCGAGGAGAAGCAGTGGGAGACTTGCCGTAGCC 738
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      GGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGT 744
consensus_14605#1      GGACAAAGACTTGTGCCGATAAGTACGCCGAGGAGAGTGCAAAGCTCGCGTGCAAAGCGT 798
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      ACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTG 804
consensus_14605#1      ACGAGGGTGTTGAGCAAGAATCCACCTTAGAAGATGACTATTTCTTCGCTGCCCTGCCTG 858
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      TTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCT 864
consensus_14605#1      TTGTTCAGAAGAGGATTGCTCAAGGTGGCGTGAGGCTTGCTGCAATACTCAACCGGATCT 918
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      TCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAA 924
consensus_14605#1      TCAGCGGGAACAAGGTTCAGAGTAGTTGATCCAATAGAGATTAAACAGATGAAAGATTAA 978
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      GAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCAC 984
consensus_14605#1      GAAAATAGCCCGCATTCTGAATTACAATAAGATTATCTTGTTTGACCATGTTAACTTCAC 1038
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      GGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGA 1044
consensus_14605#1      GGTTACGATTAGATGTATCCTCATTTAGCCATTTGTCAAAGTAGCTTAGATAGCTACAGA 1098
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      ACATTGTAATTCCTGTAAGCAAGTGGTGATTTATCAATATTGCACTGTCTTTTTGTATCA 1104
consensus_14605#1      ACATTGTAATTCCTG-AAGCAAGTGGGGATTTATCAATATTGCACTGTCTTTTTGTATCA 1157
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      TTGATCATCTTTCAGGCTGAAGTTAAGCTACAGCCGAAACGGTCAATTTATATCGGGTAG 1164
consensus_14605#1      AAAAAAAAGA-------------------------------------------------- 1167
consensus_14605#2      ------------------------------------------------------------
                                                                                   

consensus_14605#0      ATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1198
consensus_14605#1      ----------------------------------
consensus_14605#2      ----------------------------------