These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1079 fasta sequence [CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGTTTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAAAAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAAAAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGCCTTTGGGGGGGCCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAACCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAATTGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAAANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCCCTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGGGCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCCCCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAAGGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCCCCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCTTTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNTTTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATTC] [+] EMBL AA752840 [CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGTTTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAAAAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAAAAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGCCTTTGGGGGGGCCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAACCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAATTGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAAANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCCCTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGGGCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCCCCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAAGGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCCCCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCTTTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNTTTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATTC] consensusID : consensus_1461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGNTTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAAAAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTTATTTAATTTAATTNCCAAAAATTTTTAATTAAAATTTTTTTGGGTTCCCATTGGGTTTCCCCTCCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGCCTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAACCCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAATTGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTT] [+] EMBL AA752838 [CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGNTTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAAAAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTTATTTAATTTAATTNCCAAAAATTTTTAATTAAAATTTTTTTGGGTTCCCATTGGGTTTCCCCTCCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGCCTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAACCCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAATTGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1461#0 CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGT 60 consensus_1461#1 CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGN 60 ******************** **** ********** ****** **** ** *** *** consensus_1461#0 TTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAA 120 consensus_1461#1 TTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAA 120 ************ **** ***** ** ********* ** ******************* consensus_1461#0 AAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAA 180 consensus_1461#1 AAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTT-ATTTAATTTAATTNCCAA 179 ***** ***************************** ***** ************* **** consensus_1461#0 AAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATT 240 consensus_1461#1 AAATTTTTAATTAAAA-TTTTTTTGGGTTCCCATTGGGTTTCCCC-TCCCCANGAAAATT 237 ******* * ****** ********* ******** ********* * ************ consensus_1461#0 TTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGC 300 consensus_1461#1 TTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGC 297 ********************** ********************************* *** consensus_1461#0 CTTTGGGGGGG-CCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAA 359 consensus_1461#1 CTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAAC 357 *** ******* ****** **** ************************ ********* consensus_1461#0 CCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAAT 419 consensus_1461#1 CCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAA-T 416 ********** ******* ******* ** ** *** ***** **** ** ******* * consensus_1461#0 TGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCA-TTTTCCCAAGGGGCCGNTTCCTTGGC 478 consensus_1461#1 TGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGC 476 ** ** ** **** ****************** ************************** consensus_1461#0 CCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTC 538 consensus_1461#1 CCCTTGGGGGGTTT---------------------------------------------- 490 ************** consensus_1461#0 CCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAA 598 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 ANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCC 658 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 CTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGG 718 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 GCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCC 778 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 CCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAA 838 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 GGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCC 898 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 CCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCT 958 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 TTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNT 1018 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 TTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATT 1078 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 C 1079 consensus_1461#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||