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Oryza sativa
cluster # 1461 cluster # 1461       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1461#0 length = 1079 sequences # 1  
consensus_1461#1 length = 490 sequences # 1  

consensusID : consensus_1461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1079
fasta sequence
                              [CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGTTTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAAAAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAAAAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGCCTTTGGGGGGGCCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAACCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAATTGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAAANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCCCTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGGGCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCCCCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAAGGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCCCCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCTTTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNTTTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATTC]

[+] EMBL AA752840             [CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGTTTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAAAAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAAAAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGCCTTTGGGGGGGCCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAACCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAATTGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAAANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCCCTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGGGCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCCCCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAAGGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCCCCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCTTTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNTTTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATTC]


>consensus_1461#0 CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGT TTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAA AAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAA AAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATT TTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGC CTTTGGGGGGGCCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAAC CAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAATT GNAATTTNCCCCNCCCCGTTTTNTTTTGGCCATTTTCCCAAGGGGCCGNTTCCTTGGCCC CTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTCCC CAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAAAN AAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCCCT TTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGGGC GNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCCCC CCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAAGG GCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCCCC CCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCTTT TAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNTTT TAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATTC



consensusID : consensus_1461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence
                              [CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGNTTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAAAAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTTATTTAATTTAATTNCCAAAAATTTTTAATTAAAATTTTTTTGGGTTCCCATTGGGTTTCCCCTCCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGCCTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAACCCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAATTGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTT]

[+] EMBL AA752838             [CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGNTTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAAAAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTTATTTAATTTAATTNCCAAAAATTTTTAATTAAAATTTTTTTGGGTTCCCATTGGGTTTCCCCTCCCCANGAAAATTTTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGCCTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAACCCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAATTGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGCCCCTTGGGGGGTTT]


>consensus_1461#1 CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGN TTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAA AAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTTATTTAATTTAATTNCCAAA AATTTTTAATTAAAATTTTTTTGGGTTCCCATTGGGTTTCCCCTCCCCANGAAAATTTTG GAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGCCTT GGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAACCCA AAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAATTGGA AATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGCCCCT TGGGGGGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1461#0      CCAAAAAAAAATTTTTTAAANGTTTGGGNTTTTAANCCCCCCCGGGTTNGGNAAATTGGT 60
consensus_1461#1      CCAAAAAAAAATTTTTTAAAAGTTTTGGNTTTTAANNCCCCCCCGGTTTGGGAAAATGGN 60
                      ******************** **** ********** ****** **** ** *** *** 

consensus_1461#0      TTTGGGGGAAAAAAAAAANTTTGGAAATTTCCTTTGGTTTTCCCCCAAAAATTAAACCAA 120
consensus_1461#1      TTTGGGGGAAAANAAAANGTTTGGGAAATTCCTTTGGGTTNCCCCCAAAAATTAAACCAA 120
                      ************ ****  ***** ** ********* ** *******************

consensus_1461#0      AAACCGGCCCTTTTTCCCTTGGGAAAAAAGNCCTTTGGTTTTATTTAATTTAATTCCCAA 180
consensus_1461#1      AAACCCGCCCTTTTTCCCTTGGGAAAAAAGNCCTTGGGTTT-ATTTAATTTAATTNCCAA 179
                      ***** ***************************** ***** ************* ****

consensus_1461#0      AAATTTTAATTTAAAAATTTTTTTGGTTTCCCATTTGGTTTCCCCCTNCCCANGAAAATT 240
consensus_1461#1      AAATTTTTAATTAAAA-TTTTTTTGGGTTCCCATTGGGTTTCCCC-TCCCCANGAAAATT 237
                      ******* * ****** ********* ******** ********* * ************

consensus_1461#0      TTGGAAANNAAATTTTGGGGGTTCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTTGGC 300
consensus_1461#1      TTGGAAANNAAATTTTGGGGGTNCCCCCCCTGGGCCCCCAAAACCAATTTTTTTTTGGGC 297
                      ********************** ********************************* ***

consensus_1461#0      CTTTGGGGGGG-CCCCAATTCCCCTTGGGGGAAACCGCCCCCTTGGTTTTTTTGNAAAAA 359
consensus_1461#1      CTTGGGGGGGGGNCCCAATCCCCCCTGGGGGAAACCGCCCCCTTGGTTTNTTTGNAAAAC 357
                      *** *******  ****** **** ************************ ********* 

consensus_1461#0      CCAAAAAAAATTCCCTTATTCCCTTTCCCCCGNAAAAGGGCCATTTATTTATTTGGAAAT 419
consensus_1461#1      CCAAAAAAAANTCCCTTAATCCCTTTTCCNCGAAAANGGGCCNTTTANTTTTTTGGAA-T 416
                      ********** ******* ******* ** ** *** ***** **** ** ******* *

consensus_1461#0      TGNAATTTNCCCCNCCCCGTTTTNTTTTGGCCA-TTTTCCCAAGGGGCCGNTTCCTTGGC 478
consensus_1461#1      TGGAAATTTCCCCCNCCCGTTTTNTTTTGGCCAATTTTCCCAAGGGGCCGNTTCCTTGGC 476
                      ** ** ** ****  ****************** **************************

consensus_1461#0      CCCTTGGGGGGTTTTTNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTTC 538
consensus_1461#1      CCCTTGGGGGGTTT---------------------------------------------- 490
                      **************                                              

consensus_1461#0      CCCAAAGGGGGGGGGGGGGGCCCCCNGGGTTANCCCCCCAAATTTTCCCCCCCCCCCCAA 598
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      ANAAANTTGGAAANTTCCCTTTATTTTAAACCAAATTTTCCCCCCTNGGGGNCCCGTCCC 658
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      CTTTTTTTTAACAAAAACCCTTTCCCTTTGNAACTNGGGGGGAAAAAAAANCCCCCTGGG 718
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      GCGNTTTTTTNCCCCCCACCTTTTTAAATTTCCNCCCCCTTTGGGAANNAAAAAAATTCC 778
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      CCCCCCCCCTTTTCCCCCCCNCNNCTTTNGGGGGGTTTTTTTTTTTCCCCAAAAAAAAAA 838
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      GGGCCCNCCCNCCCCCNAATTTTTNCCCCCCTTNNCCCCCAAAAAAATTTTTTTNCCCCC 898
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      CCCCCCCCCNNAAAATTNGGGGNNAAAAAATGGGGGGAAAANTTTTTTTTTNNCCCCCCT 958
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      TTTAAATTTTTTTTTTNNTTTTNAAAAAATNCCCCCCCNTTTTTAAAANTTTTTTTTGNT 1018
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      TTTAAAAACCCCCCCCCCCCNTTTTTTTTTTAACCCCCCANTTAGGGGGCCCCAAAAATT 1078
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      C 1079
consensus_1461#1      -
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)