These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1279 fasta sequence [GGACTCATCGAGAGGAGCAAAGCAAAGCGAGCAGCTGAGCCCCGACGAGGTAGGGGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGT-CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTG-AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATTCTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAGCTGCTGGACTACGCAACAGAAGCCTTGATAATAAAGCTCTGATTGTCAGTGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGCAAGGTGAAACCAGTAATATACAAGACGTTTCCTCTGTCAGAAGCTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCACATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCACTATCGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCACAATA-CATGAAGAAAGTTATGTACTCATGCTCTCTCAACCAACGGATCATTTGGATATAAATGCGATTGCTTGGTTTGGAGTCCCAAAAAAAAAAAACAAAAANNAAA] [+] EMBL AK099516 [GGACTCATCGAGAGGAGCAAAGCAAAGCGAGCAGCTGAGCCCCGACGAGGTAGGGGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGT CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGCTCCAGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTG AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATTCTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAGCTGCTGGACTACGCAACAGAAGCCTTGATAATAAAGCTCTGATTATCAGTGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGCAAGGTG AACCAGTAATATACAAGACGTTTCCTCTGTCAGAAGCTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCACATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCACTATCGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCACAATA CATGAAGAAAGTTATGTACTCATGCTCTCTCAACCAACGGATCATTTGGATATAAATGCGATTGCTTGG ] [+] EMBL AU172981 [GGACTCATCGAGAGGAGCAAAGCAAAGCGAGCAGCTGAGCCCCGACGAGGTAGGGGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGT CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTNTGACGGACGCCGCCGGCTT ] [+] EMBL AK059822 [ CTCATCGAGAGGAGCAAAGCAAAGCGAGCAGCTGAGCCCCGACGAGGTAGGGGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGT CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTG AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATTCTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAGCTGCTGGACTACGCAACAGAAGCCTTGATAATAAAGCTCTGATTGTCAGTGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGCAAGGTGAAACCAGTAATATACAAGACGTTTCCTCTGTCAGAAGCTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCACATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCACTATCGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCACAATA CATGAAGAAAGTTATGTACTCATGCTCTCTCAACCAACGGATCATTTGGATATAAATGCGATTGCTTGGT ] [+] EMBL CB653820 [ GAGGAGCCATGCAAAGCGAGCAGCTGAGCCCCGACGAGGTAGGGGGAGAGATGAGGGCGGTGGTGATCCCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCCGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGT CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTG AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACCAATGGAAAGGGTGTTGATGTCCTTCTGGACAACATCGGTGGATTGTATCTTCCGCGTAACCTGAACAGCTTAACT ] [+] EMBL BP185056 [ AGCAAAGCAAAGCGAGCAGCTGAGCCCCGACGAGGTAGGGGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGT CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTGAAGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATA ] [+] EMBL AK104587 [ CGAGCAGCTGAGCCCCGACGAGGTAGGGGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGT CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTG AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATTCTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAGCTGCTGGACTACGCAACAGAAGCCTTGATAATAAAGCTCTGATTGTCAGTGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGCAAGGTGAAACCAGTAATATACAAGACGTTTCCTCTGTCAGAAGCTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCACATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCACTATCGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCACAATA CATGAAGAAAGTTATGTACTCATGCTCTCTCAACCAACGGATCATTTGGATATAAATGCGATTG ] [+] EMBL AU056248 [ AGCTGAGCCCCGACGAGGTAGGGGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCNCGCCGCCCGGCG GTNCCCCTTANCCGGGCCTCGAGTGCTCCGGNACCATCCTCGCCCTCGGCCCT ] [+] EMBL CB649640 [ GGTAGGCGGAGAGATGAGGGCGGTGGTGATCGCGCGCGCCGGTGGGCCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCTACCGCGCCGACTCCGTCCAGCGCCAGGGCCGGTACCCCGCTCCGCCCGGCGCGT CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAACGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCATCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCCTGACCAGCCACCTCTCCCCCAGCGAATCTTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTCTACACATTGCAAAGCACCTTGGAATTGAGGTTTTTGTTCCTGCATGTAGTG AGGAAACACTAGCTGCCTGCCAAGGTTTGGGT ] [+] EMBL CB653859 [ GAGGTGNTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGT CCCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCGTGACCAGCCACCTCTCCCCCAGCGAATCGTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCACAGCACCTTGGAATTAACGTTTTTGTTACTGCAGGTAGTG AGGAAAAACTAGCTGCCTGCTAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAACAAGAAACAAATGGAAAGGGTGTTGA ] [-] EMBL CB654803 [ TGGTGGATCGAGTGGAATTGGTACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTG AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATTCTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAGCTGCTGGACTACGCAACAGAAGCCTTGATAATAAAGCTCTGATTGTCAGTGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGCAAGGTGAAACCAGTAATATACAAGACGTTTCCTCTGTCAGAAGCTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCACATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCACTATCGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCACAATA CATGAAGAAAGTTATGTACTCATGCTCTCTCAACCAACGGATCATAAGGATATAAATGCGATTGCTTGGTTTGGA ] [-] EMBL CB653860 [ ACATTTGCTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTG AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATTTTGGACAACATCGGTGGATTGTATTTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAGCTGCTGGACTACGCAACAGAAGCCTTGATAATAAAGCTCTGATTGTCAGTGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGCAAGGTGAAACCAGTAATATACAAGACGTTTCTTCTGTCAGAAGCTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCCCATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCACTATCGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCCCAATA CATGAAGAAAGGTATGTACTCA ] [-] EMBL CB649641 [ CTATACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTG AGGAAAAACTAGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGTTGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATTCTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCATTGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAGCTGCTGGACTACGCAACAGAAGCCTTGATAATAAAGCTCTGATTGTCAGTGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGCAAGGTGAAACCAGTAATATACAAGACGTTTCTTCTGTCAGAAGTTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCACATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCATTATCGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGAGGTAGTATGTCAGAAAATTATGTGTCACAATAGCATGAAGAAAGTTACGTACTCATGCTTTCTCAAaaaaaaggg ] [+] EMBL AU058444 [ AATGTATTGGTATCTNGTTTGTGNNCNCACTATCGGAGCCACTTTAAACACTGTATATTTGGTTTNTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCACAATA CATGAAGNAAGTTATGTACTCATGCTCTNTCAACCAACGGATCATTTGGATATAAATGCGATTGCTTGGTTTGGAGTCCCAAAAAAAAAAAACAAAAANNAAA] consensusID : consensus_14611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 992 fasta sequence [CCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGTCCTCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCGGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGTGGGGCAGCTGCTCCCGGTGCCGGTGGGGGTGTTTTTGTCGGTCTCTCTCTTTTTGTCCTATGTGTTCTGTTTCTTTTGATTGTTTCTGTCTATTATCTCTCATTTTTTTCTCATTTTATTTCCTATTATTTTTTATCTTTTTATTAGATTTATTCTTTTTTTGTTATTTTTTTTTTACTTATTTTTTTGTGTTTTCTTTCTTTATTTTTTTTTTTTTTTTTATCCTATATGTATTATTTTTTTTTTTATTTCTCTTTTCCCCCTTTTCTTTTTATTTTTTTTCTATTGCTCTCTTCTTTTTTTTTATTTTTTTTTATTTTTTTTCCTACATCCCTTTTATCATCTTTTATTACCTTTCATTATTTTTATTTATAGTGTCATATTACTAATTATTTATTTCGTGTATTCCCTTTATTCTCCTTTTCACCCATGCTCCATCTAACTTTTCTTTACTCCTTTCTACTTCTCTTCTCCCACGCACTTGTTTGTTTTTCTATGTCTTTTTTATGCTGTTTTTGTTTCATCGTTTCATATATTCTTTATTTTAGTTTATATTTTCACTATTTTATTTCATAATGTCTATTTGTTTGTCTCCTTCGTCAATCTAAATTTGTATATATTTATTTTTTTGTTTTATGTTCTTTTGCTCCTGTTCTTTTGCTTGTTATTGATTTATTATTTGTATGTGTTTACTAGCTTCCTTTTATTATT] [+] EMBL BE040961 [CCGGAGGTGCTGGAGGAGCGGGACGTCGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGGCGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGTCCTCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTCCCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCGGCGGCGGGTATGCGGAGAAGGTGGTGGTGCCGGTGGGGCAGCTGCTCCCGGTGCCGGTGGGGGTGTTTTTGTCGGTCTCTCTCTTTTTGTCCTATGTGTTCTGTTTCTTTTGATTGTTTCTGTCTATTATCTCTCATTTTTTTCTCATTTTATTTCCTATTATTTTTTATCTTTTTATTAGATTTATTCTTTTTTTGTTATTTTTTTTTTACTTATTTTTTTGTGTTTTCTTTCTTTATTTTTTTTTTTTTTTTTATCCTATATGTATTATTTTTTTTTTTATTTCTCTTTTCCCCCTTTTCTTTTTATTTTTTTTCTATTGCTCTCTTCTTTTTTTTTATTTTTTTTTATTTTTTTTCCTACATCCCTTTTATCATCTTTTATTACCTTTCATTATTTTTATTTATAGTGTCATATTACTAATTATTTATTTCGTGTATTCCCTTTATTCTCCTTTTCACCCATGCTCCATCTAACTTTTCTTTACTCCTTTCTACTTCTCTTCTCCCACGCACTTGTTTGTTTTTCTATGTCTTTTTTATGCTGTTTTTGTTTCATCGTTTCATATATTCTTTATTTTAGTTTATATTTTCACTATTTTATTTCATAATGTCTATTTGTTTGTCTCCTTCGTCAATCTAAATTTGTATATATTTATTTTTTTGTTTTATGTTCTTTTGCTCCTGTTCTTTTGCTTGTTATTGATTTATTATTTGTATGTGTTTACTAGCTTCCTTTTATTATT] consensusID : consensus_14611#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 232 fasta sequence [AGAGGACGAGACAAGGGGGGAAGAAAGTTCCCACATTGGCAAGATACTATTGATTCCATGAATGTGTTGGTATCTTGTTTGTGCTCTCACTATGGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCCCAATACATGAAGAAAGTTATGTAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760569 [AGAGGACGAGACAAGGGGGGAAGAAAGTTCCCACATTGGCAAGATACTATTGATTCCATGAATGTGTTGGTATCTTGTTTGTGCTCTCACTATGGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTCGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCCCAATACATGAAGAAAGTTATGTACTAAAAAAAAAAAAAAAAA ] [+] EMBL CF307980 [ GGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCACAATACATGAAGAAAGTTATGTAAAAAAAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF307979 [ GTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCCCAATACATGAAGAAAGTTATGTAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14611#0 GGACTCATCGAGAGGAGCAAAGCAAAGCGAGCAGCTGAGCCCCGACGAGGTAGGGGGAGA 60 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 ------------------------------------------------------------ consensus_14611#0 GATGAGGGCGGTGGTGATCGCGCGCGCCGGCGGGCCGGAGGTGCTGGAGGAGCGGGACGT 120 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 ----------------------------------CCGGAGGTGCTGGAGGAGCGGGACGT 26 consensus_14611#0 CGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGG 180 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 CGGGGAGGGCCTCCCGCCGCCGGGGGAAGGCGAGGTGCTCGTCGGGGTGTCCGCCGCCGG 86 consensus_14611#0 CGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGTC 240 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 CGTCAACCGCGCCGACACCGTCCAGCGCCAGGGCCGGTACCCCGCGCCGCCCGGCGCGTC 146 consensus_14611#0 CCCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTC 300 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 CTCTTACCCGGGCCTCGAGTGCTCCGGCACCATCCTCGCCCTCGGCCCTAACGTCCCCTC 206 consensus_14611#0 CCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCAGCGGCGGGTATGCGGAGAA 360 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 CCGCTGGGCCGTCGGTGACCAGGTGTGCGCGCTGCTCAGCGGCGGCGGGTATGCGGAGAA 266 consensus_14611#0 GGTGGTGGTGCCGGCGGGGCAGCTGCTCCCGGTGCCGGAGGGGGTGTCTCTGACGGACGC 420 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 GGTGGTGGTGCCGGTGGGGCAGCTGCTCCCGGTGCCGGTGGGGGTGTTTTTGTCGGTCTC 326 consensus_14611#0 CGCCGGCTTGCCCGAGGTGGCCTGCACCGTCTGGTCGACCGTCTTCGTGACCAGCCACCT 480 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 TCTCTTTTTGTCCTATGTGTTCTGTTTCTTTTGATTGTTTCTGTCTATTATCTCTCATTT 386 consensus_14611#0 CTCCCCCAGCGAATCGTTCCTCATCCATGGTGGATCGAGTGGAATTGGTACATTTGCTAT 540 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 TTTTCTCATTTTATTTCCTATTATTTTTTATCTTTTTATTAGATTTATTCTTTTTTTGTT 446 consensus_14611#0 ACAGATTGCAAAGCACCTTGGAATTAAGGTTTTTGTTACTGCAGGTAGTGAGGAAAAACT 600 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 ATTTTTTTTTTA----CTTATTTTTTTGTGTTTTCTTTCTTTATTTTTTTTTTTTTTTTT 502 consensus_14611#0 AGCTGCCTGCAAAGGTTTGGGTGCCGATGTATGCATAAACTACAAAACTGAAGATTTCGT 660 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 ATCCTATATGTATTATTTTTTTTTTTATTTCTCTTTTCCCCCTTTTCTTTTTATTTTTTT 562 consensus_14611#0 TGCACGTGTCAAAGAAGAAACAAATGGAAAGGGTGTTGATGTCATTCTGGACAACATCGG 720 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 TCTATTGCTC-----------------------------TCTTCTTTTTTTTTATTTTTT 593 consensus_14611#0 TGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCAT 780 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 TTTATTTTTTTTCCTACATCCCTTTTATCATCTTTTATTACCTTTCATTATTTTTATTTA 653 consensus_14611#0 TGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATT 840 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 TAGTGTCATATTACTAATTATTTATTTCGTGTATTCCCTTTATTCTCCTTTTCACCCATG 713 consensus_14611#0 GACCATACAAGCTGCTGGACTACGCAACAGAAGCCTTGATAATAAAGCTCTGATTGTCAG 900 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 CTCCATCTAACTTTTCTTTACTCCTTTCTACTTCTCTTCTCCCACGCACTTGTTTGTT-- 771 consensus_14611#0 TGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGCAAGGTGAAACCAGTAATATA 960 consensus_14611#2 ------------------------------------------------------------ consensus_14611#1 ---------------TTTCTATGTCTTTTTTATGCTGTTTTTGTTTCATCGTTTCATATA 816 consensus_14611#0 CAAGACGTTTCCTCTGTCAGAAGCTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCA 1020 consensus_14611#2 ---------------------------AGAGGACGAGACAAGGGGGGAAGAAAGTTCCCA 33 consensus_14611#1 TTCTTTATTTTAGTTTATATTTTCACTATTTTATTTCATAATG-TCTATTTGTTTGTCTC 875 * * * * * consensus_14611#0 CATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCACTAT 1080 consensus_14611#2 CATTGGCAAGATACTATTGATTCCATGAATGTGTTGGTATCTTGTTTGTGCTCTCACTAT 93 consensus_14611#1 CTTCGTCAATCTAAATTTG----TATATATTTATTTTTTTGTTTTATGTTCTTTTGCTCC 931 * * * *** ** *** ** ** * ** * * ** * *** ** * ** consensus_14611#0 CGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAG 1140 consensus_14611#2 GGGAGCCACTTTAAACACTGTATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAG 153 consensus_14611#1 TG----TTCTTT---TGCT-TGTTATTGATTTATTATTTG----TATGTGTTTACTAGCT 979 * **** ** * * *** *** * **** * **** ** ** consensus_14611#0 TGGACGTACTATGTCAGAAAATTATGTGTCACAATACATGAAGAAAGTTATGTACTCATG 1200 consensus_14611#2 TGGACGTACTATGTCAGAAAATTATGTGTCCCAATACATGAAGAAAGTTATGTAAAAAAA 213 consensus_14611#1 TCCTTTTATTATT----------------------------------------------- 992 * ** *** consensus_14611#0 CTCTCTCAACCAACGGATCATTTGGATATAAATGCGATTGCTTGGTTTGGAGTCCCAAAA 1260 consensus_14611#2 AAAAAAAAAAAAAAAAAAA----------------------------------------- 232 consensus_14611#1 ------------------------------------------------------------ consensus_14611#0 AAAAAAAACAAAAANNAAA 1279 consensus_14611#2 ------------------- consensus_14611#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||