These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2295 fasta sequence [TTCTCTCTCTCTCTCTCATCTCTCTCAGTGAGGAGTGGTGGTGTAGCTAAGCTAGGGTTTCGCTCGGAATCAGGGTTCGTTTTCCTCCACCGGAATTGGCGGCGATCTGGAGCTCGGCACGGCGGCGCGCGGCGTGATCCGGACGCTCGGGTAGGTGAGGGAGGGAGGGAGGAGATGAAGTCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCTGCAGCGCCACGAGCAGCGGGTGGACCGCCGCGGGGGCCACTCCCCGGCCGCCGCCGCCGCCGCGAACGAGCTCCTCGCCGCCTCGCAGGATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCGATTGCAAATAGTGCATATGAGTTCTCAGAAGCACTGCAGGAAATGGGGACTTGTTTACTTAAAAGAGTCACACCAAACAAGGACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAGGCCCAGTTTGAACTGCGGAAGCTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACTCCATCACAGTCCCTTCTCAATGAACTTCAAACTGTAGAGGAAATGAAGCACCAGTGTGATG-AAAAAAGAGAGTTGTTCGAATTTCTGCTGAATGCACAGAAAGAAAAGGGAAGATCTAAGAATGCCAAAAGTGACATTGGTGCGTCAGAGCAATTGAAACAAGCTCAGGACGATTATCAAGAAGAAGCAACTCTTTTTCTATTCCGGTTAAAGTCATTGAAGCAAGGACAGTTCAGAAGTCTTTTCACACAAGCTGCTCGGCACCATGCTGCTCAGCTAAATTTATTCAGAAAGGGGCTCAAATCTCTTGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACACATTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACTCTGTGGATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTTCCTG-AAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGAAGCTATATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCTACTAGTGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGCCAAGTACAAATGTGGGAGATTTGAGAGACAATAAGCTACCAAGTCCTACCAGATTATCTAATGCACATTCAGTTTTGAAAGAGAGCAATACCAATACTACAGACACCAGGACAATGCTTGTGCTCCCTTTGGGTGATCTCTCTTTACCTGGTTATCATGACTCGAAGGCTTCTGACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCAAGGTCAACAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAGCTCTTCACATCAGCCGTCAATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAAGGAGCTTCATGAGCTTCCTCGGCCACCTGCTAATGCATCAAAACATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATT-TTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTT-TACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCA-GGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGC-AAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTGTTGTCCCAAAAAATAAAAG] [+] EMBL AK067488 [TTCTCTCTCTCTCTCTCATCTCTCTCAGTGAGGAGTGGTGGTGTAGCTAAGCTAGGGTTTCGCTCGGAATCAGGGTTCGTTTTCCTCCACCGGAATTGGCGGCGATCTGGAGCTCGGCACGGCGGCGCGCGGCGTGATCCGGACGCTCGGGTAGGTGAGGGAGGGAGGGAGGAGATGAAGTCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCTGCAGCGCCACGAGCAGCGGGTGGACCGCCGCGGGGGCCACTCCCCGGCCGCCGCCGCCGCCGCGAACGAGCTCCTCGCCGCCTCGCAGGATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCGATTGCAAATAGTGCATATGAGTTCTCAGAAGCACTGCAGGAAATGGGGACTTGTTTACTTAAAAGAGTCACACCAAACAAGGACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAGGCCCAGTTTGAACTGCGGAAGCTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACTCCATCACAGTCCCTTCTCAATGAACTTCAAACTGTAGAGGAAATGAAGCACCAGTGTGATG AAAAAAGAGAGTTGTTCGAATTTCTGCTGAATGCACAGAAAGAAAAGGGAAGATCTAAGAATGCCAAAAGTGACATTGGTGCGTCAGAGCAATTGAAACAAGCTCAGGACGATTATCAAGAAGAAGCAACTCTTTTTCTATTCCGGTTAAAGTCATTGAAGCAAGGACAGTTCAGAAGTCTTTTCACACAAGCTGCTCGGCACCATGCTGCTCAGCTAAATTTATTCAGAAAGGGGCTCAAATCTCTTGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACACATTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACTCTGTGGATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTTCCTG AAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGAAGCTATATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCTACTAGCGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGCCAAGTACAAATGTGGGAGATTTGAGAGACAATAAGCTACCAAGTCCTACCAGATTATCTAATGCACATTCAGTTTTGAAAGAGAGCAATACCAATACTACAGACACCAGGACAATGCTTGTGCTCCCTTTGGGTGATCTCTCTTTACCTGGTTATCATGACTCGAAGGCTTCTGACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCAAGGTCAACAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAGCTCTTCACATCAGCCGTCAATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAAGGAGCTTCATGAGCTTCCTCGGCCACCTGCTAATGCATCAAAACATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATT TTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTT TACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCA GGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGC AAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTT ] [+] EMBL OSC104261 [ CGTCGCTGCGGAAGCTG GGGGCTTCGCGCTGNAGNG CACGAGCAGCGGGTGGACCGCCGCGGGGGCCACTCCCCGGCCGCCGCCGCCGCCGCGAACGAGCTCCTCGCCGCCTCGCAGGATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCGATTGCAAATAGTGCATATGAGTTCTCAGAAGCACTGCAGGAAATGGGGACTTGTTTACTTAAAAGAGTCACACCAAACAAGGACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAGGCCCAGTTTGAACTGCGGAAGTTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACT ] [+] EMBL CB621739 [ CGCTGCAGCGCCACGAGCAGCGGATGGACCGCCGCGGGGGCCACTCCCCGGCCGCCGCCGCCGCCGCGAACGAGCTCCTCGCCGCCTCGCAGGATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCGATTGCAAATAGTGCATATGAGTTCTCAGAAGCACTGCAGGAAATGGGGACTTGTTTACTTAAAAGAGTCACACCAAACACGGACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAGGCCCAGTTTGAACTGCGGAAGCTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACTCCATCACAGTCCCTTCTCAATGAACTTCAAACTGTAGAGGAAATGAAGCACCAGTGTGATGAAAAAAAGAGAGTTGTTCGAATTTCTGCTGAATGCGCAGAAAGAAAAGGGAAGATCTAAGAATGCCAAAAGTGACATTGGTGCGTCAGAGCAATTGAAACAAGCTCAGGACGATTATCAAGAAGAAGCAACTCTTTTTCTATTCCGGTTAAAGTCATTGAAGCAAGGACAGTTCAGAAGTCTTTTCACACAAGCTGCTCGGCACCATGCTGCTCAGCTAAATTTATTCAGAAAGGGGCTCAAATCTCTTGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACACATTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACTCTGTGGATGAAG AAATGAGGATGATTACAATGACAGTCATGAAGA TTATCCT ] [+] EMBL CF305705 [ ACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAGGCCCAGTTTGAACTGCGGAAGCTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACTCCATCACAGTCCCTTCTCAATGAACTTCAAACTGTATAGGAAATGAAGCACCAGTGTGATG AAAAAAGAGAGTTGTTCGAATTTCTGCTGAATGCACAGAAAGAAAAGGGAAGATCTAAGAATGCCAAAAGTGACATTGGTGCGTCAGAGCAATTGAAACAAGCTCAGGACGATTATCAAGAAGAAGCAACTCTTTTTCTATTCCGGTTAAAGTCATTGAAGCAAGGACAGTTCAGAAGTCTTTTCACACAAGCTGCTCGGCACCATGCTGCTCAGCTAAATTTATTCAGAAAGGGGCTCAAATCTCTTGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACACATTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACT ] [+] EMBL CB000729 [ CGAGGAGGATTACTCTGTGGATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTTCCTG AAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGAAGCTATATACTTATGTTTTGCCTACTCCAAATGATGTTA ] [+] EMBL CA998262 [ CGAGGAGGATTACTCTGTGGATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTTCCTG AAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGAAGCTATATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCTACTAGTGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGCCAAGTACAAATGTGGGAGATTTGAGAGACAATAAGCTACCAAGTCCTACCAGATTATCTAATGCACATTCAGTTTTGAAAGAGAGCAATACCAATACTACAGACACCAGGACAATGCTTGTGCTCCCTTTGGGTGATCTCTCTTTACCTGGTTATCATGACTCGAAGGCTTCTGACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCA ] [+] EMBL BP184730 [ TGGATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTTCCTGAAAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGAAGCTATATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCTACTAGTGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGCCAAGTACAAATGTGGGAGATTTGAGAGACAATAAGCTACCAAGTCCTACCAGATTATCTAATGCACATTCAGTTTTGAAAGAGAGCAATACCAATACTACAGACACCAGGACAATGCTTGTGCTCCCTTTGGGTGATCTCTCTTTACCTGGTTATCATGACTCGAAGGCT ] [+] EMBL CF324905 [ AGATCTGGAAGTCAGTCAGCCCCACTTTTTCCTG AAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGAAGCTATATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCTACTAGTGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGCCAAGTACAAATGTGGGAGATTTGAGAGACAATAAGCTACCAAGTCCTACCAGATTATCTAATGCACATTCAGTTTTGAAAGAGAGCAATACCAATACTACAGACACCAGGACAATGCTTGTGCTCCCTTTGGGTGATCTCTCTTTACCTGGTTATCATGACTCGAAGGCTTCTGACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCAAGGTCAACAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAGCTCTTCACATCAGCCGTCAATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAAGGAGCTTCATG ] [-] EMBL CB634762 [ GACTCGAAGGCTTCTGACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCNCAGGTCAAGGTCAACAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAGCTCTTCACATCAGCCGTCAATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAAGGAGCTTCATGAGCTTCCTCGGCCACCTGCTAATGCATCAAAACATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATT TTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTT TACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCA GGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGC AAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGAGGAATAAAATCTCCATTTTTC ] [-] EMBL CB669001 [ GATGTTGTTTCTGTACCACCTAGGCACAGCTCTTCACATCAGCCGTCAATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAAGGAGCTTCATGAGCTTCCTCGGCCACCTGCTAATGCATCAAAACATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATT TTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTT TACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCA GGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGC AAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTGTTGTCCCAAAAATTAAAAG] [+] EMBL BI813601 [ ATCA T TTA GCCGA GCAAACACCACCAAGTGCTCCCC AAC GCATCACCTTGTACCGACACCACCTGGGCCTATATCCC CAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCA GGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGCAAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTGTTGT CAAAAAA ] [+] EMBL BM420326 [ CATTGTTAGGCCGA GC AACACC CCAAGTGCTCCCCAAACTGCATCACCTT TACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCAC AACATCGTTGGAGGATCATCGGCCCTTGTCACGGAGCTACCGAGTCAGTTAGCCAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCCTGGAAGAATATTGTACATATTAGTATGTGAACTCGGCC ATATTGC AATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGC AATAACGAGTTGTGGAATAAAATCTCCANTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTGTTGTCCAAAAAAA ] [-] EMBL CF327162 [ GTTTTTCAATCCTTTTTAGGGGCATGAGAACATCAGTTATTTCAGATGGTAAAGAGACAGAAGTTTTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTTTAGTTTTCTTTCAGCACAAACATGGTTGGAGGATCATCGGCCATTGTCA GGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGTTCAGTTATTTCGCCATGGAAGAATATTGTACATATTAGTATGTGAATTGGGCCAATATTGC AAATTAGTGGGTGTTTGGTTTGTATCCCCCATGGTTAAAATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTTTCTCCGATTAATTAATGTAAGATTTGTTTGTTGTGCCAAAAAAaa ] consensusID : consensus_14619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 849 fasta sequence [TCGAAGGCTTCTGACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCAAGGTCAACAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAACTCTTCACATCAGCCGTCAATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAA-GGAGCTT-CATGA-G-C-TTCC-TCGGC--CACCTGCTAATGCATCAAAACATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTTTACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGCAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTGTTGTGCCCTTGAGATGACTTGAATGCCACCTGTTTTCCACTGCTAAAAAAAAAGA] [-] EMBL CB621740 [TCGAAGGCTTCTGACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCAAGGTCAACAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAACTCTTCACATCAGCCGTCAATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAA GGAGCTT CATGA G C TTCC TCGGC CACCTGCTAATGCATCAAAACATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTTTACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGCAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTGTTGTGCCCTTGAGATGACTTGAATGCCACCTGTTTTCCACTGCTAAAAAAAAAGA] [+] EMBL BQ907815 [ aaaatatTCAAGGGAGCTTCCATGACGTCTTTCCTTCGGCCACACCTG TAATGCATC AAACATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTTTACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGCAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCaaaaa ] [+] EMBL BP184731 [ AGCTT CATGA G C TTCC TCGGC CACCTGCTAATGCATCAAAACATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTTTACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATATTGCAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATTAATTGAaaaaa ] consensusID : consensus_14619#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [TGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACACATTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACTCTGTGGATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTTCCTGAAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGAAGCTAAATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCTACTAGTGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGCCAAGTACAAATGTGGGNNATTTGNNNNNCNATAAGCTACCAAGTCCTANNNNNNNATCTAATGCNNATTCAGNTTTNNNNNNNNNNNAT] [+] EMBL CF196980 [TGAGGCTGTAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACACATTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACTCTGTGGATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTTCTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGAAGTCAGTCAGCCCCACTTTTTCCTGAAAAAAAACTTGAGGCAGCAGAGAGAATAAAAGAGTTGCGGCGTTCTGCTACGAGGAAGCTAAATACTTATGTTTTGCCTACTCCAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCTACTAGTGGATCTCCTCTTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGCCAAGTACAAATGTGGGNNATTTGNNNNNCNATAAGCTACCAAGTCCTANNNNNNNATCTAATGCNNATTCAGNTTTNNNNNNNNNNNAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14619#0 TTCTCTCTCTCTCTCTCATCTCTCTCAGTGAGGAGTGGTGGTGTAGCTAAGCTAGGGTTT 60 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 CGCTCGGAATCAGGGTTCGTTTTCCTCCACCGGAATTGGCGGCGATCTGGAGCTCGGCAC 120 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 GGCGGCGCGCGGCGTGATCCGGACGCTCGGGTAGGTGAGGGAGGGAGGGAGGAGATGAAG 180 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 TCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCTGCAGCGCCACGAGCAGCGGGTGGACCGC 240 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 CGCGGGGGCCACTCCCCGGCCGCCGCCGCCGCCGCGAACGAGCTCCTCGCCGCCTCGCAG 300 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 GATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCGATTGCA 360 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 AATAGTGCATATGAGTTCTCAGAAGCACTGCAGGAAATGGGGACTTGTTTACTTAAAAGA 420 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 GTCACACCAAACAAGGACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAGGCCCAG 480 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 TTTGAACTGCGGAAGCTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACT 540 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 CCATCACAGTCCCTTCTCAATGAACTTCAAACTGTAGAGGAAATGAAGCACCAGTGTGAT 600 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 GAAAAAAGAGAGTTGTTCGAATTTCTGCTGAATGCACAGAAAGAAAAGGGAAGATCTAAG 660 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 AATGCCAAAAGTGACATTGGTGCGTCAGAGCAATTGAAACAAGCTCAGGACGATTATCAA 720 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------TCGAAGGCTTCTGACAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATT 54 consensus_14619#0 GAAGAAGCAACTCTTTTTCTATTCCGGTTAAAGTCATTGAAGCAAGGACAGTTCAGAAGT 780 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 GTTCCCAGGTCAAGGTCAACAGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAAC 114 consensus_14619#0 CTTTTCACACAAGCTGCTCGGCACCATGCTGCTCAGCTAAATTTATTCAGAAAGGGGCTC 840 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 TCTTCACATCAGCCGTCAATACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTG 174 consensus_14619#0 AAATCTCTTGAGGCTGTAGAGCCACATG------TTAGGCTTGCTGCTGA-GCAGCAACA 893 consensus_14619#2 --------TGAGGCTGTAGAGCCACATG------TTAGGCTTGCTGCTGA-GCAGCAACA 45 consensus_14619#1 TCCTCACCTAAAATCAAGGAGCTTCATGAGCTTCCTCGGCCACCTGCTAATGCATCAAAA 234 * * **** **** * *** ***** * *** *** * consensus_14619#0 CATTGACCAT----CAGTTCAGT----------GCAC--TTGACGAGGAGGATTACTCTG 937 consensus_14619#2 CATTGACCAT----CAGTTCAGT----------GCAC--TTGACGAGGAGGATTACTCTG 89 consensus_14619#1 CATACAACATTTCCCAGTTTAGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCT 294 *** * *** ***** *** **** *** * * * *** consensus_14619#0 TGGATGAAGAAAA-TGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTAT 996 consensus_14619#2 TGGATGAAGAAAA-TGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTAT 148 consensus_14619#1 TTGGCACCCAGAGGCCAGGATCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAA 354 * * * * ***** *** * ** ** * * * * consensus_14619#0 GGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTT 1056 consensus_14619#2 GGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGGAACTT 208 consensus_14619#1 ACTGCATCACCTTTACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCT 414 * * * *** * **** * * *** * ** * * * consensus_14619#0 CTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGA--- 1113 consensus_14619#2 CTTGACAGAAGCAAAGCAGAGTATTCCTCTTTTCCTGGTGAAAGGCAGAGATCTGGA--- 265 consensus_14619#1 AGGGGCATGAGAACATCAG-GTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAA 473 * ** ** * * *** ***** * * * ** ** ** *** consensus_14619#0 --AGTCAGTCAG---------CCCCACTTTTTCCTGAAAAAAAAC----TTGAGGCAGCA 1158 consensus_14619#2 --AGTCAGTCAG---------CCCCACTTTTTCCTGAAAAAAAAC----TTGAGGCAGCA 310 consensus_14619#1 AGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCA 533 * * * *** * * * ** * * * * **** *** * * ** consensus_14619#0 GAGAGAATAA--AAGAGTTGCGGCGTTCTGCTACGAGGAAGCTATATACTTA-TGTTTTG 1215 consensus_14619#2 GAGAGAATAA--AAGAGTTGCGGCGTTCTGCTACGAGGAAGCTAAATACTTA-TGTTTTG 367 consensus_14619#1 TCGGCCATTGTCAGGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAG 593 * ** * *** * * * ** * * * *** ** **** * consensus_14619#0 -------CCTACTC--CAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCT 1266 consensus_14619#2 -------CCTACTC--CAAATGATGTTAGAGACACCTCTCAGACAGTTACAGCAAATCCT 418 consensus_14619#1 GTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATT 653 ** * *** * * * * ** ** * * ** * consensus_14619#0 ACTAGTGGATCTCCTC-----TTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGC 1321 consensus_14619#2 ACTAGTGGATCTCCTC-----TTGGAAACAAAGGTGCATTCTATTCATCTCCACTCCAGC 473 consensus_14619#1 AGTATGTGAACTCGGCCAATATTGCAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGT 713 * ** ** *** * *** *** * * ** ** * *** * * consensus_14619#0 CAAG-TACAAATGTG--GGAGATTTGAGAGACAATAAGCTACCAAGTC--CTACCAGATT 1376 consensus_14619#2 CAAG-TACAAATGTG--GGNNATTTGNNNNNCNATAAGCTACCAAGTC--CTANNNNNNN 528 consensus_14619#1 TAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATT 773 *** * ** **** * * **** * * * * ** consensus_14619#0 ATCTAATGCACATTCAGTTTTGAAAGAGAGCAATACCAATACTACAGACACCAGGACAAT 1436 consensus_14619#2 ATCTAATGCNNATTCAGNTTTNNNNNNNNNNNAT-------------------------- 562 consensus_14619#1 AATTGATGTAAGATTTGTTTGTTGTGCCCTTGAGATGACTTGAATGCCACCTGTTTTCCA 833 * * *** * * ** * consensus_14619#0 GCTTGTGCTCCCTTTGGGTGATCTCTCTTTACCTGGTTATCATGACTCGAAGGCTTCTGA 1496 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 CTGCTAAAAAAAAAGA-------------------------------------------- 849 consensus_14619#0 CAACAAAAAGGTGAAGAGAGGATCCTTTTCTGGTCCTATTGTTCCCAGGTCAAGGTCAAC 1556 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 AGAGAATATTGATGTTGTTTCTGTACCACCTAGGCACAGCTCTTCACATCAGCCGTCAAT 1616 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 ACATGTCAGAGTTTCTCCCAATACCTCGCCACCACTGTTGTCCTCACCTAAAATCAAGGA 1676 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 GCTTCATGAGCTTCCTCGGCCACCTGCTAATGCATCAAAACATACAACATTTCCCAGTTT 1736 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 AGTCGCCCACTCTGCACCGTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGA 1796 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 TCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCCAAACTGCATCACCTTTACCGAC 1856 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 ACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCAGG 1916 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 TATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCT 1976 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 TTCTAGTCTTCCTTCAGCACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCTAC 2036 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 CGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGAGGTGAAAGTTTATTTATCAAGG 2096 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 GGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAATA 2156 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 TTGCAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATA 2216 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 ACGAGTTGTGGAATAAAATCTCCATTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTG 2276 consensus_14619#2 ------------------------------------------------------------ consensus_14619#1 ------------------------------------------------------------ consensus_14619#0 TTGTCCCAAAAAATAAAAG 2295 consensus_14619#2 ------------------- consensus_14619#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||