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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1749 fasta sequence
[TCGATCCCCAAGTCTCCGCGGCGGAGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC-GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGCTTGACAT-GAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATATAAGGTAACG-CGTAAAGGAAGCAAC-AGCTGGTCATCAGTGGAATCAAAGCATGATCTAGTGGATATCTTCAAGCACAGGAGACAGCTTTACACCGTTGATATATATGGCACAGTTCAGTTGTGGGCAGAACCGCCCCGTTCATGGCCAGATGAAGATGCCCCGCAGGTGAATGACCCGTATCATAACCTCATTCACTATCCGCATCAACATGGAAAGCTTAACTGTTTGGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC-TGGAGAACAGGACGAAGGAGCT-CG-TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC-TCACGC-TGTCCGGCGCAGGCCGGAAGGACA-GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG-AAAGC-TA-CGGTACACATCCCCGTTGTCTCTGAACTTACTA-CAGTATATGTGACTGTCGCTAA-TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTT--GGACAACTCGTGG--TTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCCAAATTGTTTAAATTATCATCACCCGGTCAGAAAAAAAAGA]
[+] EMBL CB645114 [TCGATCCCCAAGTCTCCGCGGCGGAGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGG ]
[+] EMBL AK106385 [ CGGCGGAGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATTTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCGGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGCTTGACAT GAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATATAAGGTAACG CGTAAAGGAAGCAAC AGCTGGTCATCAGTGGAATCAAAGCATGATCTAGTGGATATCTTCAAGCACAGGAGACAGCTTTACACCGTTGATATATATGGCACAGTTCAGTTGTGGGCAGAACCGCCCCGTTCATGGCCAGATGAAGATGCCCCGCAGGTGAATGACCCGTATCATAACCTCATTCACTATCCGCATCAACATGGAAAGCTTAACTGTTTGGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGATCTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAAT ]
[+] EMBL CB653156 [ AGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCCCCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGA ]
[+] EMBL AU173503 [ TCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTAAGAC ]
[+] EMBL AU184795 [ TCGCGTCGCGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGCAGGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCA ]
[+] EMBL CB655779 [ CGACCCCGTCGCCGCCGCCGGCGATCCGCTCCAGCCGAACCCCGCCGCACCGCCGC GGTAGCTGCCGTCGGCGAGGTGCGTCTCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGGCCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTCGCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGAGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAAGGCCTTCTCC AGGCCATGTTGCTTGACATNGAATGACAC AACTTCACT ]
[+] EMBL BE229876 [ AGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCCTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGCTTGACAT GAATGACACAAACTTCACTGTTGCTG CATCTTACGTGACCAGAAAGGATATAAGGTAACGCCGTAAAGGAAGCAACAAGCTGGTCATC GTGGAATTAAAag ]
[+] EMBL OSS11342A [ CGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGCTTGACAT GAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATATAAGGTAACG CGTAAAGGAAGCAAC AGCTGGTCATCAGTGGAATCAAAGCATGATCTAGTGGATATCTTCAAGCACAGGAGNCAGCTTTACACCGTTGATATATATGGCACAGTTCAGTTGTGGGCAGAACCGCCCCGTTCATGGCCAGATGAAGATG CCCGCAGTGGAATGACCCGTATCATAACCTCATTCACTATCCGCATCA ]
[-] EMBL CB655780 [ GTCATCAGTGGAATCAAAGCATGATCTAGTGGATATCTTCAAGCACAGGAGACAGCTTTACACCGTTGATATATATGGCACAGTTCAGTTGTGGGCAGAACCGCCCCGTTCATGGCCAGATGAAGATGCCCCGCAGGTGAATGACCCGTATCATAACCTCATTCACTATCCGCATCAACATGGAAAGCTTAACTGTTTGGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGAACTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTT GGACAACTCGTGG TTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCCAAATTGTTTAAATTATCATCACCCGGTCAGAAAAAAAAGA]
[-] EMBL CB645115 [ GCCCCGCAGGTGAATGACCCGTATCATAACCTCATTCACTATCCGCATCAACATGGAAAGCTTAACTGTTTGGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGAACTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTT GGACAACTCGTGG TTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCC ]
[+] EMBL AU184796 [ AGCGGCAATCAAATGATAAGTTTGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGAACTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCAaaaaaaaaa ]
[+] EMBL AU173504 [ AATGATAAGTTTGTGGTCTGGATTTTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGACTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAACCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGGAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATGAAAAGCTTACCGGTACACATCCCCGTTGTCTCTGAACTTACTACCAGTATATGTGACTGTCGCTAATTTTCATAAAAGTATTGGGCAaaaaaaaaa ]
[+] EMBL C28204 [ gcntncgAACCTGAAGTNGAATTGTNTCTACTTCANTNNCTCCTACAGCAACCTGTGCGCATTCAACC TGGAGAACAGGACGAAGGAGCT CG TCGAAGCTCTTNAGCCCGCCCATGCCCACGGTCATCCAGAGCC TCACGC TGTCCGGCGCAGGCCGNAAGGACA GAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTNAACTTACTA CAGTATATGTNACTGTGGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTTTGGGACAACTCGTGGGTTTTGTAATTATCGTGTAa ]
[+] EMBL AU086019 [ CGCATTCAACCTTGGAGAACAGGACGAAGGAGCTACGTTCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCCAGAGCCTTCACGCTTGTNCCGCGCAGGCCGGAAGGACANGAGGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATG AAAGC TA CGGTACACATCCCCGTTGTCTCTGAACTTACTA CAGTATATGTGACTGTCGCTAA TTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTGTCTGAACTTT GGACAACTCGTGG TTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCCAAATTGTTTAAAa ]
consensusID : consensus_14628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 889 fasta sequence
[AGGACACGCTCTTTCCTCATAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAAGGCCTTCTCCAAGGCCATGTTGCTTGACATGAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATTTAAGGTAACGCGTAAAAGGAGCAACAGCTGGTCATTAGTGGAATCAAAGCATGATCTATTGGGATATCTTCGAGCACAAGAAGACAGCTCTACCCCCGTTGATATTATATGGCCCAGCTACTATGTGTGGCCAAAATCCCACCCGGTTCTTGGTCCAAAGAAAGACCCCACCCCAGGGAAATGGACCCGGATCTTAACCCTCATTAGCCTTTCCGCTTTAACAATGGAAAAGTCTTAATGGTTTTGGGNGGGATACCCCCCACCTCTATG]
[+] EMBL CA758190 [AGGACACGCTCTTTCCTCATAATCTGCTGACGTTTTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCCACCTGGATTCCTGTTGGTTCTTCCCATGGTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAAGGCCTTCTCCAAGGCCATGTTGCTTGACATGAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATTTAAGGTAACGCGTAAAAGGAGCAACAGCTGGTCATTAGTGGAATCAAAGCATGATCTATTGGGATATCTTCGAGCACAAGAAGACAGCTCTACCCCCGTTGATATTATATGGCCCAGCTACTATGTGTGGCCAAAATCCCACCCGGTTCTTGGTCCAAAGAAAGACCCCACCCCAGGGAAATGGACCCGGATCTTAACCCTCATTAGCCTTTCCGCTTTAACAATGGAAAAGTCTTAATGGTTTTGGGNGGGATACCCCCCACCTCTATG]
[+] EMBL D43587 [ TGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTNACTATCTGANATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCNACAAATGCGCTTAATGATTCNAAATNTTNGTGTGTACCNGAAAGGAAGAACCAAACNATTNGTntg ]
consensusID : consensus_14628#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[GGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGATTTGCTTTAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCNCACCTGGATTCCTGTTGGTTCTTCCCATGGNTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATC]
[+] EMBL CF323186 [GGTTATCTACAGCATCTGAATTGGTTATAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGATTTGCTTTAGGCGCCTAGAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTAATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGGAACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCTACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATTCGTCTCCCGAGCACTGTTACAATCTTTGGCTCNCACCTGGATTCCTGTTGGTTCTTCCCATGGNTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTAGTGGCATGCAGTTCAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 TCGATCCCCAAGTCTCCGCGGCGGAGGCGCTCGCGTCGCGACCCCGTCGCCGCCGCCGGC 60
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 GATCCGCTCCAGCCGAACCCCGCCGCACCGCCGCGGTAGCTGCCGTCGGCGAGGTGCGTC 120
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 TCGGCACCGGACTCCAGGAATCGTGCTGCTGCTGGAACGCCGCGCCCGCTCAGCCGGCGG 180
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 CCGGGCGTCCCGCGTGGCTCGCTGGCATCGATCGGGGATCCCTCCTACGGGCTCGCCGTC 240
consensus_14628#1 -------------------------AGGACACGCTCTTTCCTCAT-AATCTGCTGACGTT 34
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 GCGGAGGTTTCAGGGGACCGGCGCTTGGACACGCTCTTTCCTCATCAATCTGCTGACGTT 300
consensus_14628#1 TTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTA 94
consensus_14628#2 ---------------------------------GGTTATCTACAGCATCTGAATTGGTTA 27
consensus_14628#0 TTGAAATATTGGAATGCTTCTGTCGTCGAATTTGGTTATCTACAGCATCTGAATTGGTTA 360
***************************
consensus_14628#1 TAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAG-----------GCGCCTA 143
consensus_14628#2 TAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAGATTTGCTTTAGGCGCCTA 87
consensus_14628#0 TAACTTATAACTTATAAGTGGCATGTCTGCGAAGGTTCCAAG-----------GCGCCTA 409
****************************************** *******
consensus_14628#1 GAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTA 203
consensus_14628#2 GAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTA 147
consensus_14628#0 GAAGCTAATTCCGTTGGGATGGCAGATTGGGCTGGTCTTCAGACTGATATCCTTGGTGTA 469
************************************************************
consensus_14628#1 ATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGG 263
consensus_14628#2 ATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGG 207
consensus_14628#0 ATTGTAAAGAAGCTTGCCGTCCCTGACTATCTGAGATTCCGTGCTGTATGCACATCTTGG 529
************************************************************
consensus_14628#1 AACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCT 323
consensus_14628#2 AACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCT 267
consensus_14628#0 AACCATCTCTGTAGGGATGTATTCAACTGTCCAAGGATAGACCCATGGCTGATGCTCCCT 589
************************************************************
consensus_14628#1 ACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATT 383
consensus_14628#2 ACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATT 327
consensus_14628#0 ACAAATGCGCTTAATGATTCTAAATTTTTGTGTGTACCTGAAAGGAAGAACCAAACCATT 649
************************************************************
consensus_14628#1 CGTCTCCCGAGCACTGTTACAATCTTTGGCTCC-ACCTGGATTCCTGTTGGTTCTTCCCA 442
consensus_14628#2 CGTCTCCCGAGCACTGTTACAATCTTTGGCTCNCACCTGGATTCCTGTTGGTTCTTCCCA 387
consensus_14628#0 CGTCTCCCGAGCACTGTTACAATCTTTGGCTCC-ACCTGGATTCCTGTTGGTTCTTCCCA 708
******************************** **************************
consensus_14628#1 TGGTT-GGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTA 501
consensus_14628#2 TGGNTTGGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTA 447
consensus_14628#0 TGGTT-GGCTCATCTTTTACAGCCCATCTCATGGAACCATGCAGCTGGTTAATCCCATTA 767
*** * ******************************************************
consensus_14628#1 GTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAAGGCCTTCTCCAAGGCCATGTTGC 561
consensus_14628#2 GTGGCATGCAGTTCAATC------------------------------------------ 465
consensus_14628#0 GTGGCATGCAGTTCAATCTTCCCCCAATCGGACGAAGGGCCTTCTCCAAGGCCATGTTGC 827
******************
consensus_14628#1 TTGACATGAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATTTA 621
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 TTGACATGAATGACACAAACTTCACTGTTGCTGTCATCTTACGTGACCAGAAAGGATATA 887
consensus_14628#1 AGGTAACGCGTAAAAGGAGCAACAGCTGGTCATTAGTGGAATCAAAGCATGATCTATTGG 681
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 AGGTAACGCGTAAAGGAAGCAACAGCTGGTCATCAGTGGAATCAAAGCATGATCTAGTGG 947
consensus_14628#1 GATATCTTCGAGCACAAGAAGACAGCTCTACCCCCGTTGATATTATATGGCCCAGCTACT 741
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 -ATATCTTCAAGCACA-GGAGACAGCTTTACACC-GTTGATAT-ATATGGCACAGTT--C 1001
consensus_14628#1 ATGTGTGGCCAAAATCCCACCCGGTTCTTGGTCCAAAGAAAGACCCCACCCCAGGGAAAT 801
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 AGTTGTGGGCAGAA--CCGCCCCGTTCATGG-CCAGATGAAGATGCC-CCGCAGGTGAAT 1057
consensus_14628#1 GGACCCGGATCTTAACCCTCATTAGCCTTTCCGCTTTAACAATGGAAAAGTCTTAATGGT 861
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 G-ACCCGTATCATAACC-TCATTCAC-TATCCGCATCAACA-TGGAAAG--CTTAACTGT 1111
consensus_14628#1 TTTGGGNGGGATACCCCCCACCTCTATG-------------------------------- 889
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 TT-GGTGGAGTCCCCAGCTGGTGATCTAATGAGGGTGAAGCGGCAATCAAATGATAAGTT 1170
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 TGTGGTCTGGATTCTGGACAAGGGGACATTTTCCTGGGAGAAGGTTGATAACATCGGGGA 1230
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 CTTTGCGCTGTTTGTCAGCTACTACAGCTCGGTCTGTTACCGGGCGAAGGATCATCTCAA 1290
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 CCTGAAGTCGAATTGTGTCTACTTCATTGACTCCTACAGCAACCTGTGCGCATTCAACCT 1350
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 GGAGAACAGGACGAAGGAGCTCGTCGAAGCTCTTGAGCCCGCCCATGCCCACGGTCATCC 1410
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 AGAGCCTCACGCTGTCCGGCGCAGGCCGGAAGGACAGAGGTACATGTGGTTAATCCCTTC 1470
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 GCTGAGATAAACCAATGGAGGATGAAAGCTACGGTACACATCCCCGTTGTCTCTGAACTT 1530
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 ACTACAGTATATGTGACTGTCGCTAATTTCATAAAAGTATTGGGCATATCTATAGCACTT 1590
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 CTGTAGATAAATCAACTGTCTGAACTTTGGACAACTCGTGGTTTGTGATTATCGTGTATT 1650
consensus_14628#1 ------------------------------------------------------------
consensus_14628#2 ------------------------------------------------------------
consensus_14628#0 TTGTAATATATATATATATATATATATATATATATATATTATATAAGTTATCCTTGTCCA 1710
consensus_14628#1 ---------------------------------------
consensus_14628#2 ---------------------------------------
consensus_14628#0 AATTGTTTAAATTATCATCACCCGGTCAGAAAAAAAAGA 1749
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||