These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1676 fasta sequence [TATACAAATACCAATCCACCCCTCCTCTCCTCCTCCTCCTTTTTCCTCCCCCTTCCGAAACGACGAAAAGCAACCGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGCCGCCCCCCGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGCCTGCCGTGGGGGCTCTCTCCGCTGTGGATGAT-----AGGGAGGCTCGACGATGGGAGGGAAGAAGGCCAAGACGGTTGAGAGGAATGACCACCGCCTGCTCTGCAGT-GACGTGCTCACGG-AGGTCTTCCACAGGCTGCCGGCGCGCACCCTCGCGTCGTGCAGGCTTGTCTGCAAGTCATGGATGTCGGAGCTCACCGATCCCCATTTCGTCCACGAGCACCTCAAGAGGAGCCAGCAGAAGCTCCTGCTCTTTGCGAACGACAAGGCGAACGATAGGTCCCTCGCGATGGTGCTCGCCGACGACACGGGGGCTACCTACCAGCTGACCAGGCCCATGGCTTCGAGGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGATGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTT-CCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACA-TGATAATCCACCTCGTACA-ATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTT-GGGTTCA-GTTGTTGGCTCGGAACCT-CTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGT-CCAGAATCTGAGTTT-CCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACA-GTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTG-CCCCT-TTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACCTCCTTACAGCACATGCTTGTCTGACTTCTAATTGATGTGCTTGTTTCTAACTTCCTATTATGATGCTAAATTGATATGACGAGTTGAGAAAGAGAGGTTGTTCAGTTTTTACTTTACTTTGAATTATTGTTGCCATTTTAGGTGACCTTTTTTACATAACAGTGAAGCATG] [+] EMBL AK100129 [TATACAAATACCAATCCACCCCTCCTCTCCTCCTCCTCCTTTTTCCTCCCCCTTCCGAAACGACGAAAAGCAACCGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGCCGCCCCCCGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGCCTGCCGTGGGGGCTCTCTCCGCTGTGGATGAT AGGGAGGCTCGACGATGGGAGGGAAGAAGGCCAAGACGGTTGAGAGGAATGACCACCGCCTGCTCTGCAGT GACGTGCTCACGG AGGTCTTCCACAGGCTGCCGGCGCGCACCCTCGCGTCGTGCAGGCTTGTCTGCAAGTCATGGATGTCGGAGCTCACCGATCCCCATTTCGTCCACGAGCACCTCAAGAGGAGCCAGCAGAAGCTCCTGCTCTTTGCGAACGACAAGGCGAACGATAGGTCCCTCGCGATGGTGCTCGCCGACGACACGGGGGCTACCTACCAGCTGACCAGGCCCATGGCTTCGAGGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGATGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTT CCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACA TGATAATCCACCTCGTACA ATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTT GGGTTCA GTTGTTGGCTCGGAACCT CTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGT CCAGAATCTGAGTTT CCTTTTAGCACACGTACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACA GTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTG CCCCT TTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACC ] [+] EMBL AK067586 [ TCCCCCTTCCGAAACGACGAAAAGCAACCGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGCCGCCCCCCGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGCCTGCCGTGGGGGCTCTCTCCGCTGTGGATGAT AGGGAGGCTCGACGATGGGAGGGAAGAAGGCCAAGACGGTTGAGAGGAATGACCACCGCCTGCTCTGCAGT GACGTGCTCACGG AGGTCTTCCACAGGCTGCCGGCGCGCACCCTCGCGTCGTGCAGGCTTGTCTGCAAGTCATGGATGTCGGAGCTCACCGATCCCCATTTCGTCCACGAGCACCTCAAGAGGAGCCAGCAGAAGCTCCTGCTCTTTGCGAACGACAAGGCGAACGATAGGTCCCTCGCGATGGTGCTCGCCGACGACACGGGGGCTACCTACCAGCTGACCAGGCCCATGGCTTCGAGGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGATGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTT CCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACA TGATAATCCACCTCGTACA ATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTT GGGTTCA GTTGTTGGCTCGGAACCT CTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGT CCAGAATCTGAGTTT CCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACA GTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTG CCCCT TTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACC ] [+] EMBL AK059785 [ CCCCCTTCCGAAACGACGAAAAGCAACCGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGCCGCCCCCCGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGCCTGCCGTGGGGGCTCTCTCCGCTGTGGATGATAGGACAGGGAGGCTCGACGATGGGAGGGAAGAAGGCCAAGACGGTTGAGAGGAATGACCACCGCCTGCTCTGCAGT GACGTGCTCACGG AGGTCTTCCACAGGCTGCCGGCGCGCACCCTCGCGTCGTGCAGGCTTGTCTGCAAGTCATGGATGTCGGAGCTCACCGATCCCCATTTCGTCCACGAGCACCTCAAGAGGAGCCAGCAGAAGCTCCTGCTCTTTGCGAACGACAAGGCGAACGATAGGTCCCTCGCGATGGTGCTCGCCGACGACACGGGGGCTACCTACCAGCTGACCAGGCCCATGGCTTCGAGGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGATGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTT CCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACA TGATAATCCACCTCGTACA ATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTT GGGTTCA GTTGTTGGCTCGGAACCT CTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGT CCAGAATCTGAGTTT CCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACA GTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTG CCCCT TTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACCTCCTTACAGCACATGCTTGTCTGACTTCTAATTGATGTGCTTGTTTCTAACTTCCTATTATGATGCTAAATTGATATGACGAGTTGAGAAAGAGAGGTTGTTCAGTTTTTACTTTACTTTGAATTATTGTTGCCATTTTAGGTGACCTTTTTTACATAACAGTGAAGCATG] [+] EMBL AU085698 [ GAAAAGCAACCGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGACGCCCCCCGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGACTGCCGTGGGGGCTCTCTCCGCTGTGGATGAT AGGGAGGCTCGACGATGGGAGGGAAGAAGGNCAAGACGGTTGAGAGGAATGACCACCGACTNCTCTGAAGTAAACGTGNTCACGGAAGGTCTT ] [+] EMBL CB666498 [ AAAAGCAACCGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGCCGCCCCCCGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGCCTGCCGTGGGGGCTCTCTCCGCTGTGGATGAT AGGGAGGCTCGACGATGGGAGGGAAGAAGGCCAAGACGGTTGAGAGGAATGACCACCGCCTGCTCTGCAGT GACGTGCTCACGG AGGTCTTCCACAGGCTGCCGGCGCGCACCCTCGCGTCGTGCAGGCTTGTCTGCAAGTCATGGATGTCGGAGCTCACCGATCCCCATTTCGTCCACGAGCACCTCAAGAGGAGCCAGCAGAAGCTCCTGCTCTTTGCGAACGACAAGGCGAACGATAGGTCCCTCGCGATGGTGCTCGCCGACGACACGGGGGCTACCTACCAGCTGACCAGGCCCATGGCTTCGAGGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGATGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATT ] [+] EMBL CB660171 [ AAAAGC CCTGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGCCGCCCCCCGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGCCTGCCGTGGGGGCTCTCTCCGCTGTGGATGAT AGGGAGGCTCGACGATGGGAGGGAAGAAGGCCAAGACGGTTGAGAGGAATGACCACCGCCTGCTCTGCAGT GACGTGCTCACGG AGGTCTTCCACAGGCTGCCGGCGCGCACCCTCGCGTCGTGCAGGCTTGTCTGCAAGTCATGGATGTCGGAGCTCACCGATCCCCATTTCGTCCACGAGCACCTCAAGAGGAGCCAGCAGAAGCTCCTGCTCTTTGCGAACGACAAGGCGAACGATAGGTCCCTCGCGATGGTGCTCGCCGACGACACGGGGGCTACCTACCAGCTGACCAGGCCCATGGCTTCGAGGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGATGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCC ] [+] EMBL CB623568 [ AACCGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGCCGCCCCCCGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGCCTGCCGTGGGGGCTCTCTCCGCTGTGGATGAT AGGGAGGCTCGACGATGGGAGGGAAGAAGGCCAAGACGGTGGAGAGGAATGACCACCGCCTGCTCTGCAGT GACGTGCTCACGG AGGTCTTCCACAGGCTGCCGGCGCGCACCCTCGCGTCGTGCAGGCTTGTCTGCAAGTCATGGATGTCGGAGCTCACCGATCCCCATTTCGTCCACGAGCACCTCAAGAGGAGCCAGCAGAAGCTCCTGCTCTTTGCGAACGACAAGGCGAACGATAGGTCCCTCGCGATGGTGCTCGCCGACGACACGGGGGCTACCTACCAGCTGACCAGGCCCATGGCTTCGAGGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGATGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAA TTTGATGT ] [+] EMBL CF196812 [ GGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGACGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTT CCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACA TGATAATCCACCTCGTACA ATGGACATATTGATGCTTGATAGTGGTGATnngnnnacc ] [+] EMBL CF197177 [ GGAGCCTCTTTGTGCACAATTCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCGACGACCGGCGAATCGGCTACTCTGCCGATGCCGACGTATACCGCAGGGAGCAGCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTT CCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACA TGATAATCCACC ] [-] EMBL CB666499 [ AGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTT CCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACA TGATAATCCACCTCGTACA ATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTT GGGTTCA GTTGTTGGCTCGGAACCT CTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGT CCAGAATCTGAGTTT CCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACA GTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTG CCCCT TTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACCTCCTTACAGCACATGCTTGTCTGACTTCTAATTGATGTGCTTGTTTCTAACTTCAAGTTATGATGCTAAATTGATATG ] [-] EMBL CB623569 [ TGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTT CCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACA TGATAATCCACCTCGTACA ATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTT GGGTTCA GTTGTTGGCTCGGAACCT CTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGT CCAGAATCTGAGTTT CCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACA GTGATAATGGTGTTCATCACTTGTTTTCCAGATGTCCCGCAGTTCACAGAATTACAAAATTGTGCCCCCT TTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACCTCCTTACAGCACATGCTTGTCTGACTTCTAATTGATGTGCTTGTTTCTAACTTCCTATTATGATGCTAAATTGATATGACGAGTTGAGAA ] [+] EMBL BI808599 [ ATTTTGATGTGATGATGCTTCCCCCCACGCAAGTCGTATGGAGGCCATTGCTCTTT GCCGAGCTTGA GGAAAGCTATGC TGCTAATTGTGGAGGGT GACA TGATAATCCACCTCGTACA ATGGACATATTGATGCTTGATAGTGGTGATAAGAC ACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTT GGGTTCA TTTGTT GCTCGGAACCT CTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGT CCAGAATCTGAGGTT CCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACA GTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTAC AAATTGTGCCCCCT TTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACCTCCTTACAGCAaaaaaaaaa ] [+] EMBL BM421575 [ caAATTCGTATGGA GGCATTGCTCTTT GCGGAGCTTGAGGGAAAGCTATGCTTGCTA TTGTGGAGGGTGGACACTGATAATCCACCTCGTACACATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCCAAACACACTTTGTTCCATGAGGGAAAAATTT GGGTTCA GTTGTTGGCTCGGAACCT CTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGTCCCAGAATCTGAGTTTCCCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGC AAGATTACTTCATCAAGCAGATACACGTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCC CAGTTCACAGAATTAC AAATNGTGCCCCCTNTTGTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGT GCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATCCAGTATTGAAACCTCaaaaaa ] [+] EMBL AU068354 [ AATTTGGGGTCCAGGTTGTGGNCNCGGAACCTCCTACTGTTATGANCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGT CCAGAATCTGAGTTT CCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACA GTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTG CCCCT TTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACCTCCTTACAGCAaaaaaaaaa ] consensusID : consensus_14629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 775 fasta sequence [GCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTTCCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACATGATAATCCACCTCGTACAATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTTGGGTTCAGTTGTTGGCTCGGAACCTCTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGTCCAGAATCTGAGTTTCCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACAGTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTGCCCCTTTTTCCTTTTCAAAAAAAGGA] [-] EMBL CB668447 [GCCAGTTCTCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTACATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTTCCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACATGATAATCCACCTCGTACAATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTTGGGTTCAGTTGTTGGCTCGGAACCTCTACTGTTATGATCCAAGTTCAAGCTCCACTGAACTGAAGATGGCATGTCCAGAATCTGAGTTTCCTTTTAGCACACATACTTTCATTGAAAGCATAGTTCCTCTGCGCAAAGATTACTTCATCAAGCAGATACAGTGATAATGGTGTTCATCACTTGTTTTCCAGATGTTCCGCAGTTCACAGAATTACAAAATTGTGCCCCTTTTTCCTTTTCAAAAAAAGGA] [+] EMBL CA767103 [ ggggGATTCTTTCAATGTGTGCTGCGAGATATTCACTATTGGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTGCATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATCAATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTTCCCCCACGCAAGTCGTATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAGGGTGGACATGATAATCCACCTCGTACAATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTC ] consensusID : consensus_14629#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [GGAGGNTGGACATGATAATCCACCTCGTACAATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCCAAACACACTTTGTTCCATGAGGGAAAAATTTGGGTTCANGTTGTTGGCTCGGAACCTCTGACTGGTTGATGGATGCCAAGTTGCAAGCTGCCACCTGGAACTGGAAGATGGGCATGGTGCCAGAATGCTGGAGTTTCCTNTTTGAGCACACATGACTGTGTGCATGTGGAAAGCATAGTTGCCTGCTGGCGCAAGATTAACTTGCATGCAAGCAGGATGACACGTGNGATGAATGGGTGGTTGCATGCACCTTGGTGTTGTGCCAGATGGTTCCGCAGTTCACAGAATTACAAATTGGGCCCCCNTTTTCCNTGTCCGTTGATGAATTTTAGCTGGTCATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATNCAATCGCAGTATTGAAACCTCAAAAAAAA] [+] EMBL BM421548 [GGAGGNTGGACATGATAATCCACCTCGTACAATGGACATATTGATGCTTGATAGTGGTGATAAGACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTTACTCCCAAACACACTTTGTTCCATGAGGGAAAAATTTGGGTTCANGTTGTTGGCTCGGAACCTCTGACTGGTTGATGGATGCCAAGTTGCAAGCTGCCACCTGGAACTGGAAGATGGGCATGGTGCCAGAATGCTGGAGTTTCCTNTTTGAGCACACATGACTGTGTGCATGTGGAAAGCATAGTTGCCTGCTGGCGCAAGATTAACTTGCATGCAAGCAGGATGACACGTGNGATGAATGGGTGGTTGCATGCACCTTGGTGTTGTGCCAGATGGTTCCGCAGTTCACAGAATTACAAATTGGGCCCCCNTTTTCCNTGTCCGTTGATGAATTTTAGCTGGTCATGACTTAGAGTGGCCTATTTTACCGTGAATTGTAATTAGCTAAAATNCAATCGCAGTATTGAAACCTCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14629#0 TATACAAATACCAATCCACCCCTCCTCTCCTCCTCCTCCTTTTTCCTCCCCCTTCCGAAA 60 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 CGACGAAAAGCAACCGCCGAGGCGGAAGCGGGGAGAGGAGAATTCGCCGCCGCCGCCCCC 120 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 CGATCGGTGGAAGAACAACTAACAACTAGATTGATCCATCCCTGCGCCGCCGCCTCCGCC 180 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 TGCCGTGGGGGCTCTCTCCGCTGTGGATGATAGGGAGGCTCGACGATGGGAGGGAAGAAG 240 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 GCCAAGACGGTTGAGAGGAATGACCACCGCCTGCTCTGCAGTGACGTGCTCACGGAGGTC 300 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 TTCCACAGGCTGCCGGCGCGCACCCTCGCGTCGTGCAGGCTTGTCTGCAAGTCATGGATG 360 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 TCGGAGCTCACCGATCCCCATTTCGTCCACGAGCACCTCAAGAGGAGCCAGCAGAAGCTC 420 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 CTGCTCTTTGCGAACGACAAGGCGAACGATAGGTCCCTCGCGATGGTGCTCGCCGACGAC 480 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 ACGGGGGCTACCTACCAGCTGACCAGGCCCATGGCTTCGAGGAGCCTCTTTGTGCACAAT 540 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 TCTTGCAATGGCCTGCTCTGCCTAGGTGACAGCACAGGAGCCGTGCAGTTGCTCAACCCG 600 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 ACGACCGGCGAATCGGCTACTCTGCCGATGCCGATGTATACCGCAGGGAGCAGCCAGTTC 660 consensus_14629#1 ----------------------------------------------------GCCAGTTC 8 consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 TCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTA 720 consensus_14629#1 TCGTCGTGTAATTGGCACTGCTTGGGGTTTTGCCCGTCTACGAAGGAGCACAAAGTGGTA 68 consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 CATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATT 780 consensus_14629#1 CATTTCTACCTGGGAGCTCATTTTGATTCTTTCAATGTGTGCTGCGAGATATTCACTATT 128 consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 GGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTG 840 consensus_14629#1 GGAGATAAATCCTGGAGACAGATTGGGAGTTTCCATGGAGCACCGACAGATAGAGGGGTG 188 consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 CATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATC 900 consensus_14629#1 CATGTGAATGGAGCAGTGTACTATCTGACAAAGTTCCGTTACATTGCTTCGTCACGTATC 248 consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 AATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTTCCCCCACGCAAGTCG 960 consensus_14629#1 AATTGTTTGAATCTTGAGAGCGAAAATTTTGATGTGATGATGCTTCCCCCACGCAAGTCG 308 consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 TATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAG 1020 consensus_14629#1 TATGGAGGGCATTGCTCTTTGGCGGAGCTTGAGGGAAAGCTATGCTTGCTAGTTGTGGAG 368 consensus_14629#2 --------------------------------------------------------GGAG 4 **** consensus_14629#0 GGTGGACATGATAATCCACCTCGTACAATGGACATATTGATGCTTGATAGTGGTGATAAG 1080 consensus_14629#1 GGTGGACATGATAATCCACCTCGTACAATGGACATATTGATGCTTGATAGTGGTGATAAG 428 consensus_14629#2 GNTGGACATGATAATCCACCTCGTACAATGGACATATTGATGCTTGATAGTGGTGATAAG 64 * ********************************************************** consensus_14629#0 ACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTT 1140 consensus_14629#1 ACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTT 488 consensus_14629#2 ACAACCTGGACGCACAGATACCACATCTCATTGCCATGGTTGATGCCTTCATGTTATTTT 124 ************************************************************ consensus_14629#0 ACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTTGGGTTCAG-TTGTTGGCTCGGAA 1199 consensus_14629#1 ACTCCAAAACACACTTTGTTCCATGAGGGAAAAATTTGGGTTCAG-TTGTTGGCTCGGAA 547 consensus_14629#2 ACTCCCAAACACACTTTGTTCCATGAGGGAAAAATTTGGGTTCANGTTGTTGGCTCGGAA 184 ***** ************************************** ************** consensus_14629#0 CCTCT-ACTGTT--ATGAT--CCAAGTT-CAAGCT-CCACT--GAACTG-AAGATGG-CA 1248 consensus_14629#1 CCTCT-ACTGTT--ATGAT--CCAAGTT-CAAGCT-CCACT--GAACTG-AAGATGG-CA 596 consensus_14629#2 CCTCTGACTGGTTGATGGATGCCAAGTTGCAAGCTGCCACCTGGAACTGGAAGATGGGCA 244 ***** **** * *** ******* ****** **** ****** ******* ** consensus_14629#0 TGT--CCAGAATCT--GAGTTTCCTTTT--AGCACACAT-ACTTT-----CATTGAAAGC 1296 consensus_14629#1 TGT--CCAGAATCT--GAGTTTCCTTTT--AGCACACAT-ACTTT-----CATTGAAAGC 644 consensus_14629#2 TGGTGCCAGAATGCTGGAGTTTCCTNTTTGAGCACACATGACTGTGTGCATGTGGAAAGC 304 ** ******* ********* ** ********* *** * * ****** consensus_14629#0 ATAGTTCCTCT---GCGCAAAGATTACTT-CAT-CAAGCAG----ATACA-GTGAT-AAT 1345 consensus_14629#1 ATAGTTCCTCT---GCGCAAAGATTACTT-CAT-CAAGCAG----ATACA-GTGAT-AAT 693 consensus_14629#2 ATAGTTGCCTGCTGGCGCAAGATTAACTTGCATGCAAGCAGGATGACACGTGNGATGAAT 364 ****** * ****** * **** *** ******* * ** * *** *** consensus_14629#0 GG---------TGTTCATCACTTGTTTTCCAGATG-TTCCGCAGTTCACAGAATTACAAA 1395 consensus_14629#1 GG---------TGTTCATCACTTGTTTTCCAGATG-TTCCGCAGTTCACAGAATTACAAA 743 consensus_14629#2 GGGTGGTTGCATGCACCTTGGTGTTGTGCCAGATGGTTCCGCAGTTCACAGAATTACAAA 424 ** ** * * * * * ******* ************************ consensus_14629#0 ATTGTGCCCCTTTTTCCTTTTCCGTTGATGAATTTTAGCTGGTCAATGACTTAGAGTGGC 1455 consensus_14629#1 ATTGTGCCCCTTTTTCCTTTTCAAAAAAAGGA---------------------------- 775 consensus_14629#2 TTGGGCCCCCNTTTTCCNTGTCCGTTGATGAATTTTAGCTGGTCATGACTTAGAGTGGCC 484 * * **** ****** * ** * * * consensus_14629#0 CTATTTTACCGTGAATTGTAATTAGCTAAAATAAATGCAGTATTGAAACCTCCTTACAGC 1515 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 TATTTTACCGTGAATTGTAATTAGCTAAAATNCAATCGCAGTATTGAAACCTCAAAAAAA 544 consensus_14629#0 ACATGCTTGTCTGACTTCTAATTGATGTGCTTGTTTCTAACTTCCTATTATGATGCTAAA 1575 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 A----------------------------------------------------------- 545 consensus_14629#0 TTGATATGACGAGTTGAGAAAGAGAGGTTGTTCAGTTTTTACTTTACTTTGAATTATTGT 1635 consensus_14629#1 ------------------------------------------------------------ consensus_14629#2 ------------------------------------------------------------ consensus_14629#0 TGCCATTTTAGGTGACCTTTTTTACATAACAGTGAAGCATG 1676 consensus_14629#1 ----------------------------------------- consensus_14629#2 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||