cluster # 1464

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Oryza sativa
cluster # 1464 cluster # 1464 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1464#0 length = 1132 sequences # 1

consensus_1464#1 length = 456 sequences # 1

consensusID : consensus_1464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1132
fasta sequence

                              [TAGATCTATCTCAGATCGAAAGACAGCTAGAAATGGGGGGCAATGGCGGCGGCGGCGGCGGCGATGGCGTGACGGTGGTTGGGCGGGCGGAGATCGACATGAGGGCGCCGTTCCGGTCGGTGAAGGAGGCCGTCGTCCTCTTCGGCGAGAAGGAGACGCCTCTGCTCGCCGGTGATGGTGATGTTCATGGACCTGGACTACATCGCCTCCGATTAATGAATCGTGCCGCCACAACGCCGCCGGCAATATGGCCAACATTTAGCCAACAGCAAGTCTCCGGCGGGGTCGTCGCCGTGACCCGCCACGTGCCGGCGGAGCTGGAGGAGGCGAGGCAGGAGCTGGAGAAGGAGCGGTCCGAGAAGCAGAAGATGGCCGGCTGCATCCTCTCCCTGCAGGAGGAGCTCAGCAACGCTATGAGCGAGCTCAACAAGATCAAGGCACGCGACGACGTCGGCGACGGCGACGGTGGCGAGGCGGCCGCCAAGGTGATCGACCTGCAGGTGGAGGACCTCAAGTTCGTCGAGATCGACGACGACAAGCCACAGCCGCGCCAGCAGTCGCCGTCCCCCGGCGAGTTCCAGAAGAGGAGGTACGTGACGTTCGCCGACCCGCCGCCGCCGATGGCATCAGCGTACGACCGCGCGCCACCGCAGGCGCCATTGCCGGACGTGGTGATCGAGCTGCGCCATCGTCACAACCACAGCAGCACACCCTCGCCGCCGCAGCTCCGCGAGGTGCGGTTCATGAGGCAGATGTCGGCCAGCCATGGCATGATGAAGGCGGCGGCGGTGGCAGCGGTCGATCAAGAGGGGAGAAAGAAGAAGAAATCGTTGATTCCTCTGGTTGGAGCATTGTTCATGAGGAAGAAGAAGAGCAGCAGCTGCAGCTGCCACAACGACGACTCGGCGCTCAACCCGCGCACCTCCTTTTGATCCTACCCGTCCGATTGTTGCATCGGACGCTTCTCCACCGTCGGATATATTGAAGTACAAAATACATATACGGTATTTATATACGAGTATAGTATACTACTCCCTCGTATGTGTGCGAGCGTACACGTACGTACACCATGATGCTTGCTTATTTTGGATCATTAATAAATAAACTTGAGCTGTAATATACAATGGATATA]

[+] EMBL AK064677             [TAGATCTATCTCAGATCGAAAGACAGCTAGAAATGGGGGGCAATGGCGGCGGCGGCGGCGGCGATGGCGTGACGGTGGTTGGGCGGGCGGAGATCGACATGAGGGCGCCGTTCCGGTCGGTGAAGGAGGCCGTCGTCCTCTTCGGCGAGAAGGAGACGCCTCTGCTCGCCGGTGATGGTGATGTTCATGGACCTGGACTACATCGCCTCCGATTAATGAATCGTGCCGCCACAACGCCGCCGGCAATATGGCCAACATTTAGCCAACAGCAAGTCTCCGGCGGGGTCGTCGCCGTGACCCGCCACGTGCCGGCGGAGCTGGAGGAGGCGAGGCAGGAGCTGGAGAAGGAGCGGTCCGAGAAGCAGAAGATGGCCGGCTGCATCCTCTCCCTGCAGGAGGAGCTCAGCAACGCTATGAGCGAGCTCAACAAGATCAAGGCACGCGACGACGTCGGCGACGGCGACGGTGGCGAGGCGGCCGCCAAGGTGATCGACCTGCAGGTGGAGGACCTCAAGTTCGTCGAGATCGACGACGACAAGCCACAGCCGCGCCAGCAGTCGCCGTCCCCCGGCGAGTTCCAGAAGAGGAGGTACGTGACGTTCGCCGACCCGCCGCCGCCGATGGCATCAGCGTACGACCGCGCGCCACCGCAGGCGCCATTGCCGGACGTGGTGATCGAGCTGCGCCATCGTCACAACCACAGCAGCACACCCTCGCCGCCGCAGCTCCGCGAGGTGCGGTTCATGAGGCAGATGTCGGCCAGCCATGGCATGATGAAGGCGGCGGCGGTGGCAGCGGTCGATCAAGAGGGGAGAAAGAAGAAGAAATCGTTGATTCCTCTGGTTGGAGCATTGTTCATGAGGAAGAAGAAGAGCAGCAGCTGCAGCTGCCACAACGACGACTCGGCGCTCAACCCGCGCACCTCCTTTTGATCCTACCCGTCCGATTGTTGCATCGGACGCTTCTCCACCGTCGGATATATTGAAGTACAAAATACATATACGGTATTTATATACGAGTATAGTATACTACTCCCTCGTATGTGTGCGAGCGTACACGTACGTACACCATGATGCTTGCTTATTTTGGATCATTAATAAATAAACTTGAGCTGTAATATACAATGGATATA]




>consensus_1464#0
TAGATCTATCTCAGATCGAAAGACAGCTAGAAATGGGGGGCAATGGCGGCGGCGGCGGCG
GCGATGGCGTGACGGTGGTTGGGCGGGCGGAGATCGACATGAGGGCGCCGTTCCGGTCGG
TGAAGGAGGCCGTCGTCCTCTTCGGCGAGAAGGAGACGCCTCTGCTCGCCGGTGATGGTG
ATGTTCATGGACCTGGACTACATCGCCTCCGATTAATGAATCGTGCCGCCACAACGCCGC
CGGCAATATGGCCAACATTTAGCCAACAGCAAGTCTCCGGCGGGGTCGTCGCCGTGACCC
GCCACGTGCCGGCGGAGCTGGAGGAGGCGAGGCAGGAGCTGGAGAAGGAGCGGTCCGAGA
AGCAGAAGATGGCCGGCTGCATCCTCTCCCTGCAGGAGGAGCTCAGCAACGCTATGAGCG
AGCTCAACAAGATCAAGGCACGCGACGACGTCGGCGACGGCGACGGTGGCGAGGCGGCCG
CCAAGGTGATCGACCTGCAGGTGGAGGACCTCAAGTTCGTCGAGATCGACGACGACAAGC
CACAGCCGCGCCAGCAGTCGCCGTCCCCCGGCGAGTTCCAGAAGAGGAGGTACGTGACGT
TCGCCGACCCGCCGCCGCCGATGGCATCAGCGTACGACCGCGCGCCACCGCAGGCGCCAT
TGCCGGACGTGGTGATCGAGCTGCGCCATCGTCACAACCACAGCAGCACACCCTCGCCGC
CGCAGCTCCGCGAGGTGCGGTTCATGAGGCAGATGTCGGCCAGCCATGGCATGATGAAGG
CGGCGGCGGTGGCAGCGGTCGATCAAGAGGGGAGAAAGAAGAAGAAATCGTTGATTCCTC
TGGTTGGAGCATTGTTCATGAGGAAGAAGAAGAGCAGCAGCTGCAGCTGCCACAACGACG
ACTCGGCGCTCAACCCGCGCACCTCCTTTTGATCCTACCCGTCCGATTGTTGCATCGGAC
GCTTCTCCACCGTCGGATATATTGAAGTACAAAATACATATACGGTATTTATATACGAGT
ATAGTATACTACTCCCTCGTATGTGTGCGAGCGTACACGTACGTACACCATGATGCTTGC
TTATTTTGGATCATTAATAAATAAACTTGAGCTGTAATATACAATGGATATA

consensusID : consensus_1464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [NGCAAGTCAGCAATGGCCGGCGGCGATGGCGTGACGGTGGTGGGGCGGGCGGAGATCGACACGCGGGCGCCGTTCAGGTCAGTGAAGGAGGCCGTCGTCCTCTTCGGCGAGAAGGTACTCGCCGGCGAGCTCCACGCCGGAGCCGGGCGGCGGCTACTCGCCACATCCGACCAGCTGCAGCAGAATCGTGCTACCACAACACCGCCGGCAAGATGGCCAACAGTTAGTCAAGTCAAACAAATCGCCGGCGCGGTGGCAGCGGCGGCGGGGGCGACACGCCACGCGCCGGCGATGGCAACGGCGGACTAGAGGAGGCGAACAGGAGCTGGAGAAGGAGCGGTCGGAGAAGAAGAAGATGGCCGGCTGCATCCTCTCCCTGCAGGAGGAGCTCAGCAACGCCATGAGCGAGCTCAACAAGCTCAAGGCACGAGACAACGAAGACGACGACGGCGGCGG]

[+] EMBL AU070988             [NGCAAGTCAGCAATGGCCGGCGGCGATGGCGTGACGGTGGTGGGGCGGGCGGAGATCGACACGCGGGCGCCGTTCAGGTCAGTGAAGGAGGCCGTCGTCCTCTTCGGCGAGAAGGTACTCGCCGGCGAGCTCCACGCCGGAGCCGGGCGGCGGCTACTCGCCACATCCGACCAGCTGCAGCAGAATCGTGCTACCACAACACCGCCGGCAAGATGGCCAACAGTTAGTCAAGTCAAACAAATCGCCGGCGCGGTGGCAGCGGCGGCGGGGGCGACACGCCACGCGCCGGCGATGGCAACGGCGGACTAGAGGAGGCGAACAGGAGCTGGAGAAGGAGCGGTCGGAGAAGAAGAAGATGGCCGGCTGCATCCTCTCCCTGCAGGAGGAGCTCAGCAACGCCATGAGCGAGCTCAACAAGCTCAAGGCACGAGACAACGAAGACGACGACGGCGGCGG]




>consensus_1464#1
NGCAAGTCAGCAATGGCCGGCGGCGATGGCGTGACGGTGGTGGGGCGGGCGGAGATCGAC
ACGCGGGCGCCGTTCAGGTCAGTGAAGGAGGCCGTCGTCCTCTTCGGCGAGAAGGTACTC
GCCGGCGAGCTCCACGCCGGAGCCGGGCGGCGGCTACTCGCCACATCCGACCAGCTGCAG
CAGAATCGTGCTACCACAACACCGCCGGCAAGATGGCCAACAGTTAGTCAAGTCAAACAA
ATCGCCGGCGCGGTGGCAGCGGCGGCGGGGGCGACACGCCACGCGCCGGCGATGGCAACG
GCGGACTAGAGGAGGCGAACAGGAGCTGGAGAAGGAGCGGTCGGAGAAGAAGAAGATGGC
CGGCTGCATCCTCTCCCTGCAGGAGGAGCTCAGCAACGCCATGAGCGAGCTCAACAAGCT
CAAGGCACGAGACAACGAAGACGACGACGGCGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1464#0      TAGATCTATCTCAGATCGAAAGACAGCTAGAAATGGGGGGCAATGGCGGCGGCGGC-GGC 59
consensus_1464#1      --------------------------------------NGCAA-GTCAGCAATGGCCGGC 21
                                                             **** * * **   *** ***

consensus_1464#0      GGCGATGGCGTGACGGTGGTTGGGCGGGCGGAGATCGACATGAGGGCGCCGTTCCGGTCG 119
consensus_1464#1      GGCGATGGCGTGACGGTGGTGGGGCGGGCGGAGATCGACACGCGGGCGCCGTTCAGGTCA 81
                      ******************** ******************* * *********** **** 

consensus_1464#0      GTGAAGGAGGCCGTCGTCCTCTTCGGCGAGAAGGAGACGCCTCTGCTCGC-CGGTGATGG 178
consensus_1464#1      GTGAAGGAGGCCGTCGTCCTCTTCGGCGAGAAGGT-ACTCGCCGGCGAGCTCCACGCCGG 140
                      **********************************  ** *  * **  ** *   *  **

consensus_1464#0      TGATGTTCATGGACC-TGGACTACATC--GCCTCCGATTAATGAATCGTGCCGCCACAAC 235
consensus_1464#1      AGCCGGGCGGCGGCTACTCGCCACATCCGACCAGCTGCAGCAGAATCGTGCTACCACAAC 200
                       *  *  *   * *      * *****   **  *       *********  *******

consensus_1464#0      GCCGCCGGCAATATGGCCAACATTTAGCCAAC---AGCAAGTCTCCGGCGGGGTCGTCGC 292
consensus_1464#1      ACCGCCGGCAAGATGGCCAACAGTTAGTCAAGTCAAACAAATCGCCGGCGCGGTGGCAGC 260
                       ********** ********** **** ***    * *** ** ****** *** *  **

consensus_1464#0      CGTG---------ACCCGCCACGTGCCGGCG-----------GAGCTGGAGGAGGCGAGG 332
consensus_1464#1      GGCGGCGGGGGCGACACGCCACGCGCCGGCGATGGCAACGGCGGACTAGAGGAGGCGAA- 319
                       * *         ** ******* *******           *  ** **********  

consensus_1464#0      CAGGAGCTGGAGAAGGAGCGGTCCGAGAAGCAGAAGATGGCCGGCTGCATCCTCTCCCTG 392
consensus_1464#1      CAGGAGCTGGAGAAGGAGCGGTCGGAGAAGAAGAAGATGGCCGGCTGCATCCTCTCCCTG 379
                      *********************** ****** *****************************

consensus_1464#0      CAGGAGGAGCTCAGCAACGCTATGAGCGAGCTCAACAAGATCAAGGCACGCGACGACGTC 452
consensus_1464#1      CAGGAGGAGCTCAGCAACGCCATGAGCGAGCTCAACAAGCTCAAGGCACGAGACAACGAA 439
                      ******************** ****************** ********** *** ***  

consensus_1464#0      GGCGACGGCGACGGTGGCGAGGCGGCCGCCAAGGTGATCGACCTGCAGGTGGAGGACCTC 512
consensus_1464#1      GACGACGACGGCGGCGG------------------------------------------- 456
                      * ***** ** *** **                                           

consensus_1464#0      AAGTTCGTCGAGATCGACGACGACAAGCCACAGCCGCGCCAGCAGTCGCCGTCCCCCGGC 572
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      GAGTTCCAGAAGAGGAGGTACGTGACGTTCGCCGACCCGCCGCCGCCGATGGCATCAGCG 632
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      TACGACCGCGCGCCACCGCAGGCGCCATTGCCGGACGTGGTGATCGAGCTGCGCCATCGT 692
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      CACAACCACAGCAGCACACCCTCGCCGCCGCAGCTCCGCGAGGTGCGGTTCATGAGGCAG 752
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      ATGTCGGCCAGCCATGGCATGATGAAGGCGGCGGCGGTGGCAGCGGTCGATCAAGAGGGG 812
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      AGAAAGAAGAAGAAATCGTTGATTCCTCTGGTTGGAGCATTGTTCATGAGGAAGAAGAAG 872
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      AGCAGCAGCTGCAGCTGCCACAACGACGACTCGGCGCTCAACCCGCGCACCTCCTTTTGA 932
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      TCCTACCCGTCCGATTGTTGCATCGGACGCTTCTCCACCGTCGGATATATTGAAGTACAA 992
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      AATACATATACGGTATTTATATACGAGTATAGTATACTACTCCCTCGTATGTGTGCGAGC 1052
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      GTACACGTACGTACACCATGATGCTTGCTTATTTTGGATCATTAATAAATAAACTTGAGC 1112
consensus_1464#1      ------------------------------------------------------------
                                                                                  

consensus_1464#0      TGTAATATACAATGGATATA 1132
consensus_1464#1      --------------------