These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1552 fasta sequence [CAAAATTCCCGAGAAGAAGAAGGGAAAAAAACACACACACATACAGAGAGAAAATATCANGG-TGCTGCTGAGCCCGCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGGGGCT-C--CGGTG-CTGCGTCAGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGTCGGCGGCCGGCAGCGTGGCGTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGATTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTGCTGAGCACCAAGAACCTCGACGCCATCACCGACTCGATCCAGCGCGCCTTCGCCACCGTCGACGCCAACCTCTCCACCTGGCTCGAGCAGATGGACAAGGAAGATGAGTCCGGCGCCACGGCCACGGCCATGTTCCTCAGGAACGATGTCCTTGTTGTCTCGCACATTGGCGACTCCTGCTTGCAGGTCGTATCACGCGGTGGGAGGCCTCAAGCTGTGACCAACTTCCACCGACCGTACGGGAACAAGAAAGCGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGATGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTCGTG-CTTTTGGAGACATTAGATTTAAGACACGGAAGAATGAGATGTTGGTAAAAGGAGTTAAAGAAGGGAGATGGACTGAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTAT-CCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGGGATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGGGATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA-AACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG-TTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGCTCTTTTTT--TTTTCTGGAAGATCCTTTGATTCATCTTAGTAACTCACCACATCGAAGAGTTACTCCCTCCGTCGATTTACCCAGTCATTTTTTTAATTTCAGAAAACCAACTTTGTATATTTTGATCAACATTAGTCAAAATCCTATGTTCAATTTTTGATGTTAAAAAAAAAA] [+] EMBL OSS13517A [CAAAATTCCCGAGAAGAAGAAGGGAAAAAAACACACACACATACAGAGAGAAAATATCANGG TGCTGCTGAGCCCGCGTNTNCCGCGGCTGCCGCTCGCCTCCGNCTCCNCCGCTGGAGCGGGGCT C CGGTG CTGCNTCA CGGCGGCAGGGCCGGNTCGGCGGCGTGGTGCCACGCNTCGGCGGCCGGCAGCGTGGCGTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCNNGCAACGAGATGGAGGACGAGGTCGTCCTCCGNCCCGGCTCCCTCCTC ] [+] EMBL AU096515 [ AGAAGGGAAAAAAACACACACACATACAGAGAGAAAATATCATGGCAGCTGCTGAGCCCGCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGGGGCT C CGGTG CTGCGTCAGCGGCGGCAGGGCCGGGTCGG ] [+] EMBL AK106278 [ CTGCTGAGCCCGCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGGGGCT C CGGTG CTGCGTCAGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGTCGGCGGCCAGCAGCGTGGCGTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGATTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTGCTGAGCACCAAGAACCTCGACGCCATCACCGACTCGATCCAGCGCGCCTTCGCCACCGTCGACGCCAACCTCTCCACCTGGCTCGAGCAGATGGACAAGGAAGATGAGTCCGGCGCCACGGCCACGGCCATGTTCCTCAGGAACGATGTCCTTGTTGTCTCGCACATTGGCGACTCCTGCTTGCAGGTCGTATCACGCGGTGGGAGGCCTCAAGCTGTGACCAACTTCCACCGACCGTACGGGAACAAGAAAGCGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGATGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTCGTG CTTTTGGAGACATTAGATTTAAGACACGGAAGAATGAGATGTTGGTAAAAGGAGTTAAAGAAGGGAGATGGACTGAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTAT CCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGGGATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGGGATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA AACTGGAAGGAGCTGCCTGCTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG TTGCAGTAGGCCTAGGTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGCTCTTTTTT TTTTCTGGAAGATCCTTTGATTCA ] [+] EMBL CB618899 [ ggctcCGGTGCTGCGTCGGCGTCGGCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCGTGGCGGCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGCTTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTGCTGAGCACCAAGAACCTCGACGCCATCACCGACTCGATCCAGCGCGCCTTCGCCACCGTCGACGCCAACCTCTCCACCTGGCTCGAGCAGATGGACAAGGAAGACGAGTCCGGCGCCACGGCCACGGCCATGTTCCTCAGGAACGATGTCCTTGTTGTCTCGCACATTGGCGACTCCTGCTT GGTCGTATCACGCGGTGGGAGGCCTCAAGCTGTGACCAACTTCCACCGACCGTACGGGAACAAGAAAGCGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGATGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTC ] [+] EMBL AU070383 [ GTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGATTCTCCGCCGTCGAGTTCCTCAAGGACGAG ] [-] EMBL CB618900 [ CGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGATGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTCGTG CTTTTGGAGACATTAGATTTAAGACACGGAAGAATGAGATGTTGGTAAAAGGAGTTAAAGAAGGGAGATGGACTGAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTAT CCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGGGATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGGGATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA AACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG TTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGCT ] [+] EMBL BQ907123 [ TGTTTCTCGTGCCTTTGGGANACATGAGATTTAAGACCCGGAAGAATGAGAT TTGGTAAAAGGA TTAAAGAAGGGAGATGGACTGAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTATCCCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGGGATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGGGATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA AACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTT GGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCGCTTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTCATGGGGCTCTTTTTTTCTTTTCTGGAAaaa ] [+] EMBL BI811235 [ CAGTACCATTA TTAGGGATCAACTAC GCAACATGGGGAT TCCA GTTCCCTGTGAGCCACTTGGTCAGATAGCTCTGGATC TC GTC CAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACACAACTGGAAGGAGCTGCCTGTTCAAAGCCCAAATTTATTCTTGGAGTTAACTCAA CAGTTGCAACAGTT GGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG TT CAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCC AGATATTAATGGGGCTCTTTTTTTCTTTTCTGGAAGATCCTTTGATTCATCTTAGTAACTCACCACATCGAAGAGTTACTCCCTCCGTCGATTTACCCAGTCATTTTTTTAATTTCAGAAAACCAACTTTGTATATTTTGATCAACATTAGTCAAAATCCTATGTTCAATTTTTGATGTTAAAAAAAAAA] [+] EMBL CA752606 [ TCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGCTGACTTGGGGAGGACA AACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCG TTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTGTATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATT ] consensusID : consensus_14648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [TCCCTTCTAGGCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGTGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGCGGCGAGCTGTCGAGGCACCGGCGTCACTGCCGGCCAAGTCGCGCCGCGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATAGGTTCTGAGGTAATTCAAGAAATGCTCTATGGTCTGAATTCATAGGTTTTTTTGGCTGGAATCTCGTACAGTTCCTTTCATCACCTCCCCCAAAGTTTTAGCATGCAATGTTTCTTCTTCTTTTTTCTCTCTTGCTCTGTTTGGTTCTTCCTTTCCCTTTTCCTTTTGTTTCTCCACTTGTGAATAACCTTTCATTTCTTTACATTCAGTAGTACTCTAGTAGAAATGTTCCTCTGTTTCTTCTCCGTTACTGTTGATCATGTTCGTTTGCTGTTTGTGGGTTGTGGCACCAAGAAATGGATGGTTGAATGAGAGAGGGTGGGTGTTGGTGTGCTCCTGCATTTTATTGGAAGCAGCAGCTTCCAGATCTGAGATGGCAGAGGCATTTTGCTGCTCATGGCT] [+] EMBL CB677733 [TCCCTTCTAGGCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGTGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGCGGCGAGCTGTCGAGGCACCGGCGTCACTGCCGGCCAAGTCGCGCCGCGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATAGGTTCTGAGGTAATTCAAGAAATGCTCTATGGTCTGAATTCATAGGTTTTTTTGGCTGGAATCTCGTACAGTTCCTTTCATCACCTCCCCCAAAGTTTTAGCATGCAATGTTTCTTCTTCTTTTTTCTCTCTTGCTCTGTTTGGTTCTTCCTTTCCCTTTTCCTTTTGTTTCTCCACTTGTGAATAACCTTTCATTTCTTTACATTCAGTAGTACTCTAGTAGAAATGTTCCTCTGTTTCTTCTCCGTTACTGTTGATCATGTTCGTTTGCTGTTTGTGGGTTGTGGCACCAAGAAATGGATGGTTGAATGAGAGAGGGTGGGTGTTGGTGTGCTCCTGCATTTTATTGGAAGCAGCAGCTTCCAGATCTGAGATGGCAGAGGCATTTTGCTGCTCATGGCT] consensusID : consensus_14648#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 385 fasta sequence [ATCCATCGAAACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGTGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGGGGCGAGCTGTCGAGGCACCGGCGTCACCGCCGGCCAAGTC-GCGCCGCGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATA] [+] EMBL AU166687 [ATCCATCGAAACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGTGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGCGGCGAGCTGTCGAGGCACCGGCGTCACCGCCGGCCAAGTC GCGCCGCGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATA] [+] EMBL C26766 [ CGAAACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGGGCCGAGCTGTCGAGGCACCGGCGTCACt ] [+] EMBL AU070166 [ AACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCTGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCAGCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCG ] [+] EMBL AU029782 [ GAAAATATCACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGCTGCGTCGGCGGCGGCGGCATGGCCGGGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGGCAGCATGGCANCGGCGTTGGAGCTGGAGGCTATCCGGTGGGGGACCGCCAAGCTGCAGGGTGCGGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAACGGGCGAGCTGTCGAGGCACCGGCGTCACCGCCGGCCAAGTCTGCGNCGGGCCGCACCTCCTCCCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATT ] consensusID : consensus_14648#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [GTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGCCAACGNCGGATTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTTGTTGAGAACAAAGAACCTCGACGCAATNAACCGAATTGATCAAGCGGGGCTTNGCAACGTCGACGCAAACTTTCAANTTGGTTGAGANATGACAAGGA] [+] EMBL C28935 [GTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGCCAAGCTGCAGGGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCCCTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGCCAACGNCGGATTCTCCGCCGTCGAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGCGGTTGTTGAGAACAAAGAACCTCGACGCAATNAACCGAATTGATCAAGCGGGGCTTNGCAACGTCGACGCAAACTTTCAANTTGGTTGAGANATGACAAGGA] consensusID : consensus_14648#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [AGGANTCTGCACNAAGCCAAATTTATCTTGGAGTTAACTCAANCAGTTGCAACAGTTGGGGCCNTCTCATTAGGGATTTATATTTCATCNCTCCTTGNGTTGNAATAGGCCTANGTAATTCTNGCAAGTGTGTNTANTACTTACACTTTTACCGTCTGCAANTTCTANCTGCNAAAATGTACATTCTTATAGGGTAAATGCATATGATATCCATTGAATNTGTACTTCAGCTCCTGCTGGNCANAATATTAATGGGGCNCTTTTNNTTTTCTGGAAAAAAATNAGTGNTAACC] [+] EMBL BE228966 [AGGANTCTGCACNAAGCCAAATTTATCTTGGAGTTAACTCAANCAGTTGCAACAGTTGGGGCCNTCTCATTAGGGATTTATATTTCATCNCTCCTTGNGTTGNAATAGGCCTANGTAATTCTNGCAAGTGTGTNTANTACTTACACTTTTACCGTCTGCAANTTCTANCTGCNAAAATGTACATTCTTATAGGGTAAATGCATATGATATCCATTGAATNTGTACTTCAGCTCCTGCTGGNCANAATATTAATGGGGCNCTTTTNNTTTTCTGGAAAAAAATNAGTGNTAACC] consensusID : consensus_14648#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [CAGTTTTACGGCCTGCAACTTCTAGNTGCAAATNATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGGTNTTTTTTTTTTTNNTGGAANGTTCCNTTTGNTTCAAAAAAAA] [+] EMBL AU096335 [CAGTTTTACGGCCTGCAACTTCTAGNTGCAAATNATGTACATTCTTATAGGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGGTNTTTTTTTTTTTNNTGGAANGTTCCNTTTGNTTCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14648#0 CAAAATTCCCGAGAAGAAGAAGGGAAAAAAACACACACACATACAGAGAGAAAATATCAN 60 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 GGTGCTGCTGAGCCCGCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGC 120 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 GGGGCTCCGGTGCTGCGTCAGCGGCGGCAGGGCCGGGTCGGCGGCGTGGTGCCACGCGTC 180 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ---------------ATCCATCGAAACCAGCCGCCACCGTCCCCTTCGGAGAGAAAATAT 45 consensus_14648#0 GGCGGCCGGCAGCGTGGCGTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGC 240 consensus_14648#3 ------------------GTCGTCGTCGTCGGAGCTGGAGGCCATCCGGTGGGGGACCGC 42 consensus_14648#4 ------------------AGGANTCTGCACNAAGCCAAATTTATCTTGGAGTTAACTCAA 42 consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ---------------------------TCCCTTCTAGGCGCTGGAGCGTGGCTGGGGTGC 33 consensus_14648#2 CACCGTGTGCCGCGGCTGCCGCTCGCCTCCGCCTCCGCCGCTGGAGCGTGGCTGGGGTGC 105 consensus_14648#0 CAAGCTGCAG--GGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCC 298 consensus_14648#3 CAAGCTGCAG--GGCGCGCGCGACGAGATGGAGGACGAGGTCGTCCTCCGCCCCGGCTCC 100 consensus_14648#4 NCAGTTGCAACAGTTGGGGCCNTCTCATTAGGGATTTATATTTCATCNCTCCTTGNGTTG 102 consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 TGCGTCGGCGGCGGCGGCAGGGCCGGTGTCGGCGGCGTGGTGCCACGCGACGGCGGCCGG 93 consensus_14648#2 TGCGTCGGCGGCGGCGGCAGGGCCGG-GTCGGCGGCGTGGTGCCACGCGACGGCGGCCGG 164 consensus_14648#0 CTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGGCCACGCCGGATTCTCCGCCGTC 358 consensus_14648#3 CTCCTCGACGGCTTCTCCTTCGCCGCCGTCTTCGACGCCAACGNCGGATTCTCCGCCGTC 160 consensus_14648#4 NAATAGGCCTANGTAATTCTNGCAAGTGTGTNTANTACTTACACT---TTTACCGTCTGC 159 consensus_14648#5 -----------------------------------------CAGT---TTTACGGCCTGC 16 consensus_14648#1 CAGCATGGCAGCGGCGTTGGAGCTGGAGGCTAT----CCGGTGGGGGACCGCCAAGCTGC 149 consensus_14648#2 CAGCATGGCAGCGGCGTTGGAGCTGGAGGCTAT----CCGGTGGGGGACCGCCAAGCTGC 220 * * * consensus_14648#0 GAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGC--GG 416 consensus_14648#3 GAGTTCCTCAGGGACGAGCTGTACAAGGAATGCGCGGCGGCGTTGGACGGCGGCGC--GG 218 consensus_14648#4 AANTTCT---------ANCTG--CNAA-AATGTACATTCTTATAGGGTAAATGCATATGA 207 consensus_14648#5 AACTTCT---------AGNTG--CAAATNATGTACATTCTTATAGGGTAAATGCATAGGA 65 consensus_14648#1 AGGGCGC--GGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGC 207 consensus_14648#2 AGGGTGC--GGGCAAGCGGCACCCACCCCTTCCTCTCGCGCGCCCATCGAGCGCGGAAGG 278 * * * ** * consensus_14648#0 T-GCTGAGCACCAAGAACCTCGACGCC-ATCA-CCGACTCGA-TCCAGCGCGCCTTCGCC 472 consensus_14648#3 TTGTTGAGAACAAAGAACCTCGACGCA-ATNAACCGAATTGA-TCAAGCGGGGCTTNGC- 275 consensus_14648#4 TATCCATTGAATNTGTACTTCAGCTCCTGCTGGNCANAATAT-TAATGGGGCNCTTTTN- 265 consensus_14648#5 TATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATAT-TAATGGGGGTNTTTTT- 123 consensus_14648#1 GGCGAGCTGTCGAGGCACCGGCGTCACTGCCGGCCAAGTCGCGCCGCGCCGCACCTCCTC 267 consensus_14648#2 GGCGAGCTGTCGAGGCACCGGCGTCACCGCCGGCCAAGTCGCGCCGCGCCGCACCTCCTC 338 * ** * * * consensus_14648#0 ACCGTCGACGCCAACCTCTCCACCTGGCTCGAGCAGATGGACAAGGAAGATGAGTCCGGC 532 consensus_14648#3 AACGTCGACGC-AAACTTTCAANTTGG-TTGAG-ANATG-ACAAGGA------------- 318 consensus_14648#4 --NTTTTCTGGAAAAAAATNAGTGNTAACC------------------------------ 293 consensus_14648#5 --TTTTTTNNTGGAANGTTCCNTTTGNTTCAAAAAAAA---------------------- 159 consensus_14648#1 CCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATAGGTTCTGAGGTAA 327 consensus_14648#2 CCAGCCGTCTAGCGACCTCAAGAAATGCTCCATGGTCTGAATTCATA------------- 385 consensus_14648#0 GCCACGGCCACGGCCATGTTCCTCAGGAACGATGTCCTTGTTGTCTCGCACATTGGCGAC 592 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 TTCAAGAAATGCTCTATGGTCTGAATTCATAGGTTTTTTTGGCTGGAATCTCGTACAGTT 387 consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 TCCTGCTTGCAGGTCGTATCACGCGGTGGGAGGCCTCAAGCTGTGACCAACTTCCACCGA 652 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 CCTTTCATCACCTCCCCCAAAGTTTTAGCATGCAATGTTTCTTCTTCTTTTTTCTCTCTT 447 consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 CCGTACGGGAACAAGAAAGCGTCTCTTGAAGAGGTGAAGCGGATCAGAGCAGCAGGTGGA 712 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 GCTCTGTTTGGTTCTTCCTTTCCCTTTTCCTTTTGTTTCTCCACTTGTGAATAACCTTTC 507 consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 TGGATTGTTGATGGACGCATATGTGGAGAAATTTCTGTGTCTCGTGCTTTTGGAGACATT 772 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ATTTCTTTACATTCAGTAGTACTCTAGTAGAAATGTTCCTCTGTTTCTTCTCCGTTACTG 567 consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 AGATTTAAGACACGGAAGAATGAGATGTTGGTAAAAGGAGTTAAAGAAGGGAGATGGACT 832 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 TTGATCATGTTCGTTTGCTGTTTGTGGGTTGTGGCACCAAGAAATGGATGGTTGAATGAG 627 consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 GAAAAGTTTATCTCACGAATAAATTTTAAAGGAGATTTAATAGTCTCTTCACCTGACGTA 892 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 AGAGGGTGGGTGTTGGTGTGCTCCTGCATTTTATTGGAAGCAGCAGCTTCCAGATCTGAG 687 consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 TCCCTGGTCGAACTTGGACCAGATGTGGAATTTGTTTTGCTAGCAACAGATGGTCTTTGG 952 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ATGGCAGAGGCATTTTGCTGCTCATGGCT------------------------------- 716 consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 GATTACATTAAAAGCTCTGAAGCAGTAGCATTAGTTAGGGATCAACTACGGCAACATGGG 1012 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 GATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGAC 1072 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 AACATTAGTATAGTCATAGCTGACTTGGGGAGGACAAACTGGAAGGAGCTGCCTGTTCAA 1132 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 AGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAACAGTTGGGGCCGTCTCATTA 1192 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 GGGATTTATATTTCATCGCTCCTTGCGTTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTG 1252 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 TATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATA 1312 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 GGGTAAATGCATAGGATATCCGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTA 1372 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 ATGGGGCTCTTTTTTTTTTCTGGAAGATCCTTTGATTCATCTTAGTAACTCACCACATCG 1432 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 AAGAGTTACTCCCTCCGTCGATTTACCCAGTCATTTTTTTAATTTCAGAAAACCAACTTT 1492 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ consensus_14648#0 GTATATTTTGATCAACATTAGTCAAAATCCTATGTTCAATTTTTGATGTTAAAAAAAAAA 1552 consensus_14648#3 ------------------------------------------------------------ consensus_14648#4 ------------------------------------------------------------ consensus_14648#5 ------------------------------------------------------------ consensus_14648#1 ------------------------------------------------------------ consensus_14648#2 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||