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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1410 fasta sequence
[AAAGAAAAACACCTCCTCCTCTCTTCCTTCCAGCGAGCTCCACCTCCAGCCAGCCATAGCCATCCCCTTCTCCGATTCGATCGCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCG-CCCGCCGGCGTCGGCGGG-GGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAGGCTCCAGCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGCGTTTTAACAAACATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTTGTTTGTTTGTATCTTGGCAGTTGTTGATATACTAGCTTGAGTCCCTTGCTTACAGTGAAAAA]
[+] EMBL AK071054 [AAAGAAAAACACCTCCTCCTCTCTTCCTTCCAGCGAGCTCCACCTCCAGCCAGCCATAGCCATCCCCTTCTCCGATTCGATCGCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCG CCCGCCGGCGTCGGCGGG GGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAG GCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGCGTTTTAACAAACATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTT ]
[+] EMBL CF323666 [ ATAGCCATCCCCTTCTCCGATTCGATCGCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCG CCCGCCGGCGTCGGCGGG GGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCAC ]
[+] EMBL OSR2822A [ GATCGCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGG GATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAG GNGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGTCACCGTTCCGCCGGCGTCGGCGGGTGGCTCAGGCGGCGGCGGGG ]
[+] EMBL CA305831 [ GAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAGGCTCCAGCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAG ]
[-] EMBL CB672253 [ ATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAGGCTCCAGCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTTGGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAACTCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGCGTTTTAACAAACATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTTGTTTGTTTG ]
[+] EMBL AU161555 [ ACAGCACCTAGTATGTTTTGCATTGATACAAAAGGAATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTTGCATTTTTTGTACAAGGATTTCAAGCGTTTTNACCATTGCAGTTCTGCGTTTTAACAAACATGTATGTNCTTTTTCATCGAACTNTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTGGAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAAGAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGGAAAATACACACATGGTTTGTTTGTTTGTATCTTGGCAGTTGTTGATATACTAGCTTGAGTCCCTTGCTTACAGTGAAAAA]
consensusID : consensus_14652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1246 fasta sequence
[AAAGAAAAAGAAAAAAAAAAAGAAAAACCCAACTCCGAACCCTTTCTTTTGCTCCAAGCGCGCGCGCCGCCACTGGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCTGCGGCGAGGCCGGCGGAGGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGATCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCCACCGGTCGGGGCCGATGGCCGGGGAGCCCCCGGCGACGCTGGACCCGGCCTTCCCCACCGAGGTCCTCAAGGACTTCCTCTTCCTCGGCAGCTACAACAACGCCTCCCGCTCCGAGGTCCTCAAGACGCTCAGCATCACCCACATCCTCAACACTGTGCCAGATTGTCAGAATCTCTACCGGAATTCTTTCACTTATCACTGCATTCAGGATGAGAGGAGCTTGGATTTTGATGGTGCAAACAGGTTTTTAGAACAGTGTGAAAGGGAGACATCACGTGTTCTTGTCCATTGCATGTCTGGAAAAAACAGGTCTGCAGCTATTGTAATAGGCTACTTGATGAAATCTAGGGGATGGAGACTTTCACAGTCTTACCAATGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATCTTCGAGCGAGTCAACCCAAGTAAT-ATTCCTAGTAATTTTACTTTTGGAGCAATGGAGG-CCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTC-ATAACTCATAAGAGGAC-C-TGACATGTTC-AATCTC-CTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC-AAATGATGGCAATTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCACGCTTTTTCAGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK102281 [AAAGAAAAAGAAAAAAAAAAAGAAAAACCCAACTCCGAACCCTTTCTTTTGCTCCAAGCGCGCGCGCCGCCACTGGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCTGCGGCGAGGCCGGCGGAGGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGATCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCCACCGGTCGGGGCCGATGGCCGGGGAGCCCCCGGCGACGCTGGACCCGGCCTTCCCCACCGAGGTCCTCAAGGACTTCCTCTTCCTCGGCAGCTACAACAACGCCTCCCGCTCCGAGGTCCTCAAGACGCTCAGCATCACCCACATCCTCAACACTGTGCCAGATTGTCAGAATCTCTACCGGAATTCTTTCACTTATCACTGCATTCAGGATGAGAGGAGCTTGGATTTTGATGGTGCAAACAGGTTTTTAGAACAGTGTGAAAGGGAGACATCACGTGTTCTTGTCCATTGCATGTCTGGAAAAAACAGGTCTGCAGCTATTGTAATAGGCTACTTGATGAAATCTAGGGGATGGAGACTTTCACAGTCTTACCAATGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTTCACAGAATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATCTTCGAGCGAGTCAACCCAAGTAAT ATTCCTAGTAATTTTACTTTTGGAGCAATGGAGG CCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTC ATAACTCATAAGAGGAC C TGACATGTTC AATCTC CTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC AAATGATGGCAATTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCACGCT ]
[+] EMBL AU162270 [ ACCCTTTCTTTTGCTCCAAGCGCGCGCGCCGCCACNNGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCTGCGGCGAGGCCGGCGGAGGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGATCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCAACCGGTCGGGGCCGATNG CGGGGAGCCCCCGGCGACNCTGGACCCGGCCTTCCCCACCGAGGTCCTCAAGGANTTCCTCTTCCTCGGCAGNTACAACAACACTTCCGGTTCNGAGGTCCTCAAGAGGTTCAGNATAACCa ]
[+] EMBL AU067980 [ ACCCTTTCTTTTGCTCCAAGCGCGCGCGCCGCCACTGGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCTGCGGCGAGGCCGGCGGACGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGATCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCCACCGGTCGGGGCCGATGGCCGGGGAGCCCCCGGCGACGCTGGACCNGGCCTTCCCCACCGAGGTCCTCAAGGACTTCCTCTTCCTCGGCAGCTACAACAACGCCTCCCGCTCCGAGGT ]
[+] EMBL AU029558 [ CAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATCTTCGAGCGAGTCAACCCAAGTAAT ATTCCTAGTAATTTTACTTTTGGAGCAATGGAGG CCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTC ATAACTCATAAGAGGNC C TGACATGTTC AATCTC CTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC AAATGATGGCAATTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCAaaaaaaaa ]
[+] EMBL AU067981 [ TTCGAGCGAGTCAACCCAAGTAATAATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCCAACACNCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTC ATAACTCATAAGNGGNC C TGACATGTTN AATCTC CTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC AAATGATGGCAATTGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCNCGCTTTTTCAGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI808027 [ caAAGTCAATAACTCATAAGAGGACACATGACATGTTCAAATCTCACTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGCAAAATGATGGCAAATGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCAaaaaaaaa ]
[+] EMBL BE229512 [ TGGATATTACTG CAGGAATATCTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGC AAATGATGGCAATTGMTCAGGGTTATATGCACTGACTGCCAATCATGGCAAATGGCCCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGRTGGCACGYTTTTTCAG CCCAAAAAAAA ]
consensusID : consensus_14652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence
[GGGTCCGGGCCCCCCCCTTCAGCGAGCTCCCCTTAGAGCCAGCCATAGCCATCCCCTTCTCCGATTCGACCTCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCGCCCGCCGGCGTCGGCGGGGGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAACCGTCAGGAGACATCCAGGTGCCTATCT]
[+] EMBL CB672254 [GGGTCCGGGCCCCCCCCTTCAGCGAGCTCCCCTTAGAGCCAGCCATAGCCATCCCCTTCTCCGATTCGACCTCTCGCCGTCGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGGGAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCGCCCGCCGGCGTCGGCGGGGGCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAGATGCGTTCCCTTCACTTGGATTTGGTTTCCCAAACCGTCAGGAGACATCCAGGTGCCTATCT]
[+] EMBL CF330173 [ GGCGTTCCCGTCGGAGATCCTCAAGGACTTCCTCTTCCTCGGCAGCTACGACAACGCCTCCCGCTCCGAGCTGCTCAAGACCATCGGCATCTCCCACATCCTCAATACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTC ]
consensusID : consensus_14652#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[AGGACGAGACAAGGGGGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTTCACAGCATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATNGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATTTTCGAGCGAGTCAACCCAAGTAATATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTCATAACTCATAAGAAGACCTGACATGTTCAATCTCCTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATTTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCAAATGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAGTGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762132 [AGGACGAGACAAGGGGGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTTCACAGCATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAATNGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGTGACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCCGTCCATTTTCGAGCGAGTCAACCCAAGTAATATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCAACACTCCTATGGACGACAATGGCGCGCCCGCACCAACTTCAGGTGATAACCCGATGGACAGCTCATAACAAGTCATAACTCATAAGAAGACCTGACATGTTCAATCTCCTCTGTAGTGATTAGTGAATGGATATTACTGCCAGGCATATTTGATATGCAAAATGGGATGTTATTTAGATGGTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCAAATGATCAGGGTTATATGCACTGACTGCCAATCATGGCAAGTGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCATGATGGCAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14652#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence
[TTTTGTGTCATTTGGGAATAGACCAATCCTCTGAGATGAAGCTTGCTATTGCAAGTACCAGTTAGTTGATGGCAACTAGGAACAATGGTTAGCTAGCCAATATCTGACAGGATTATCAGCTTTATTGTTTAGACATGTACTCTGCAACTTTGCAAATGTTCTTGTTCTATTTGAAAGTAAAATGATATCTTACATAGTTCTTGCTTGGCAGACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAG]
[+] EMBL CF304017 [TTTTGTGTCATTTGGGAATAGACCAATCCTCTGAGATGAAGCTTGCTATTGCAAGTACCAGTTAGTTGATGGCAACTAGGAACAATGGTTAGCTAGCCAATATCTGACAGGATTATCAGCTTTATTGTTTAGACATGTACTCTGCAACTTTGCAAATGTTCTTGTTCTATTTGAAAGTAAAATGATATCTTACATAGTTCTTGCTTGGCAGACTGTACCCTTATGCCAAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGTTTGATGATGCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTGGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAATTCCACTGTTGGCATTCCAGCTCAGGCTTTTGTTCCAACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14652#0 ------------------------------------------------------------
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 AAAGAAAAAGAAAAAAAAAAAGAAAAACCCAACTCCGAACCCTTTCTTTTGCTCCAAGCG 60
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 ------------------------------------------------------------
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 CGCGCGCCGCCACTGGACTACCGCACCACCACCACCGGCCGATCGAGCGCGGCGGCGGCT 120
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 ------------------------------------------------------------
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 GCGGCGAGGCCGGCGGAGGAGGCGAGATGAGGAAGCGGGAGAGGGAGAACCCCTGCGAGA 180
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 ------------------------------------------------------------
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 TCTGCGGGCACTACCACAACAGCGAGGAAGGGGAGCGGTGCGGGGTCTGCGGCCACCGGT 240
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 ------------------------------------------------------------
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 CGGGGCCGATGGCCGGGGAGCCCCCGGCGACGCTGGACCCGGCCTTCCCCACCGAGGTCC 300
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 ------------------------------------------------------------
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 TCAAGGACTTCCTCTTCCTCGGCAGCTACAACAACGCCTCCCGCTCCGAGGTCCTCAAGA 360
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 -----------------------------AAAGAAAAACACCTCCTCCTCTCTTCCTTCC 31
consensus_14652#2 ---------------------------------------GGGTCCGGGCCCCCCCCTTC- 20
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 CGCTCAGCATCACCCACATCCTCAACACTGTGCCAGATTGTCAGAATCTCTACCGGAATT 420
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 AGCGAGCTCCACCTCCAGCCAGCCATAGCCATCCCCTTCTCCGATTCGATCGCTCGCCGT 91
consensus_14652#2 AGCGAGCTCCCCTTAGAGCCAGCCATAGCCATCCCCTTCTCCGATTCGACCTCTCGCCGT 80
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 CTTTCACTTATCACTGCATTCAGGATGAGAGGAGCTTGGATTTTGATGGTGCAAACAGGT 480
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 CGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGG 151
consensus_14652#2 CGCCGCGGGGCCAATCCGATCCCGCCGCTCGCCGGCGATCCGGTTCGAGCCGCCGGAAGG 140
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 TTTTAGAACAGTGTGAAAGGGAGACATCACGTGTTCTTGTCCATTGCATGTCTGGAAAAA 540
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 GAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCAC 211
consensus_14652#2 GAGGCGATCATGAGGAAGCGGGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCAC 200
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ACAGGTCTGCAGCTATTGTAATAGGCTACTTGATGAAATCTAGGGGATGGAGACTTTCAC 600
consensus_14652#3 --------------------------------------------------------AGGA 4
consensus_14652#0 AAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCGCCCGCCGGCGTCGGCGGGG 271
consensus_14652#2 AAGTACGAGCTCGGGGAGGTGTGCGGGGTGTGCGGCCACCGCCCGCCGGCGTCGGCGGGG 260
consensus_14652#4 TTTTGTGTCATTTGGGAATAGACCAATCCTCTGAGATGAAGCTTGCTATTGCAAGTACCA 60
consensus_14652#1 AGTCTTACCAATGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTT-CACAG 659
consensus_14652#3 CGAGACAAGGGGGGGTGAAAGACCGGCGACCACAGGTGCAACTGACAGATGCTT-CACAG 63
** * * * * * *
consensus_14652#0 GCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCG 331
consensus_14652#2 GCTCAGGCGGCGGCGGGGGCGGCGCAGGCGGCGGCGCCGAGGCAGGACTCGGCGTTCCCG 320
consensus_14652#4 G-TTAGTTGATGGCAACTA-GGAACAATGGTTAG---CTAGCCAATATCTGACAGGATTA 115
consensus_14652#1 AATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAA 719
consensus_14652#3 CATCAGCTCGTTGAGTATGAACAGAAGCTTTTCGGACCCAATGTTGGCGCACCTGCTCAA 123
* ** * * * * * *
consensus_14652#0 TCGGAGATCCTCAAGGACTTCCTCT-TCCTCGGCAGCTACGACAACGCCTCCCGCTCCGA 390
consensus_14652#2 TCGGAGATCCTCAAGGACTTCCTCT-TCCTCGGCAGCTACGACAACGCCTCCCGCTCCGA 379
consensus_14652#4 TCAG----CTTTATTGTTTAGACATGTACTCTGCAACTTTGCAAATGT-TCTTGTTCTA- 169
consensus_14652#1 TCGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGT 779
consensus_14652#3 TNGTCGGTTCCAACTGAATCATTTCGTCCTCTTGGATTTGGTTTCCCAAAACCGGCAGGT 183
* * * * * *** * * *
consensus_14652#0 GCTGCTCAAGACCATCGGCATCTCCCACA-TCCTCAAT------ACTGTACCCTTATGCC 443
consensus_14652#2 GCTGCTCAAGACCATCGGCATCTCCCACA-TCCTCAAT------ACTGTACCCTTATGCC 432
consensus_14652#4 --TTTGAAAGTAAAATGATATCTTACATAGTTCTTGCTTGGCAGACTGTACCCTTATGCC 227
consensus_14652#1 GACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCC---------GTCCATCTTCGAG 830
consensus_14652#3 GACATCCAAGCGCCCGTATTCAACCAGCAGCCCGTGCC---------GTCCATTTTCGAG 234
*** * * ** * * *
consensus_14652#0 AAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGT 503
consensus_14652#2 AAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGT 492
consensus_14652#4 AAAACCTTTACCGAAATTCGTTCACGTACCACTGCCTTCAAGACGAGAAGACTTTGCAGT 287
consensus_14652#1 CGAGTCAACCCAAGTAATATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCAACACT 890
consensus_14652#3 CGAGTCAACCCAAGTAATATTCCTAGTAATTTTACTTTTGGAGCAATGGAGGCCAACACT 294
* * * * * * * *** * * ** * * ** *
consensus_14652#0 TTGATGAT--GCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGT 561
consensus_14652#2 TTGATGAT--GCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGT 550
consensus_14652#4 TTGATGAT--GCAATCCAATTTTTAGAACAGTGCGAAAGAGATAAAGCACGTGTTCTAGT 345
consensus_14652#1 CCTATGGACGACAATGGCGCGCCCGCACCAAC-TTCAGGTGATAA--CCCGATGGACAGC 947
consensus_14652#3 CCTATGGACGACAATGGCGCGCCCGCACCAAC-TTCAGGTGATAA--CCCGATGGACAGC 351
*** **** * ** * * ***** * ** **
consensus_14652#0 CCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGAC 621
consensus_14652#2 CCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGAC 610
consensus_14652#4 CCATTGCATGTCAGGGAAAAGTAGATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGAC 405
consensus_14652#1 TCATAACAAGTCATAACTCATAAGAGGACCTG-ACATGTT-CAATCTCCTCTGTAGTGAT 1005
consensus_14652#3 TCATAACAAGTCATAACTCATAAGAAGACCTG-ACATGTT-CAATCTCCTCTGTAGTGAT 409
*** ** **** * *** * * * * *** * ** ** * **
consensus_14652#0 CAAAGGCTGGAGACT--TTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTG 679
consensus_14652#2 CAAAGGCTGGAGACT--TTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTG 668
consensus_14652#4 CAAAGGCTGGAGACT--TTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTG 463
consensus_14652#1 TAGTGAATGGATATTACTGCCAGGCATATCTGATATGCAAAATGGGATGTTATTTAGATG 1065
consensus_14652#3 TAGTGAATGGATATTACTGCCAGGCATATTTGATATGCAAAATGGGATGTTATTTAGATG 469
* * **** * * * ** * * * ** * *** * **
consensus_14652#0 CAATT---GGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAAT 736
consensus_14652#2 CAATT---GGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAAT 725
consensus_14652#4 CAATT---GGCTGATGCGGCGCAGCGGCAACTGATCGAATATGAACAGAAGCTTTTCAAT 520
consensus_14652#1 GTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCAATTGATCAGGGTTATATGCAC 1125
consensus_14652#3 GTCTCTAGAATTGATGAATGGTTCTGGCAAATGATGGCAAATGATCAGGGTTATATGCAC 529
* ***** * ***** **** * * *** *** * * *
consensus_14652#0 T-----CCACTGTTGGCATTCCAGCTCAGGCTTTTGT-TCCAACAGATGCGTTCCCTTCA 790
consensus_14652#2 T-----CCACTGTTGGCATTCCAGCTCAGGCTTTTGT-TCCAACAGATGCGTTCCCTTCA 779
consensus_14652#4 T-----CCACTGTTGGCATTCCAGCTCAGGCTTTTGT-TCCAACAG-------------- 560
consensus_14652#1 TGACTGCCAATCATGGCAAATGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCAT 1185
consensus_14652#3 TGACTGCCAATCATGGCAAGTGGACCTGTGGGTTTATATGCAATAGACTAAGTTAATCAT 589
* *** * ***** * * *** * * *** **
consensus_14652#0 CTTGGATTTGGTTTCCCAAAACCGTCAGGAGACATCCAGGTGCCTATCTTTAACCAGCAG 850
consensus_14652#2 CTTGGATTTGGTTTCCCAAA-CCGTCAGGAGACATCCAGGTGCCTATCT----------- 827
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 GATGGCACGCTTTTTCAGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1245
consensus_14652#3 GATGGCA---------------AAAAAAAAAAAAAAAAA--------------------- 613
consensus_14652#0 GCTCCAGCATCCATCTTTGAGCGTGTAAGCCCACACAACATCCCTAGCAATTTCACATTT 910
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 A----------------------------------------------------------- 1246
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 GGGGCTGAAAGAACTACTGAAGTGAAGCTCCCAGATAACAATAGCTTTGGTGTTGTCAAC 970
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ------------------------------------------------------------
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 TCATCTGGGGGCGATAGCATGATGGACAGCTCCTAGTATGTTTTGCATTGATACAAAAGG 1030
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ------------------------------------------------------------
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 AATCAACTCCGAATTTAGTCAGATTTCTCGGGATGTTTTAGATTTCTGAGAAGGAAAGTT 1090
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ------------------------------------------------------------
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 GCATTTTTTGTACAAGGATTTCAAGCGTTTTGACCATTGCAGTTCTGCGTTTTAACAAAC 1150
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ------------------------------------------------------------
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 ATGTATGTGCTTTTTCATCGAACTTTTCAAGTGTAATTCAAGTTAACTGAAATTACGCTG 1210
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ------------------------------------------------------------
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 GAAAGCTCAAGTAAAAGCTATGCATGTGTTTTTGTTGAAACGTAGAAATGTAGTCGTCAA 1270
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ------------------------------------------------------------
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 GAATGCTGTAACACCCAGAAATATTACTCCCACGGCTGCAAGATGAACTGAGAAATCTGG 1330
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ------------------------------------------------------------
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 AAAATACACACATGGTTTGTTTGTTTGTATCTTGGCAGTTGTTGATATACTAGCTTGAGT 1390
consensus_14652#2 ------------------------------------------------------------
consensus_14652#4 ------------------------------------------------------------
consensus_14652#1 ------------------------------------------------------------
consensus_14652#3 ------------------------------------------------------------
consensus_14652#0 CCCTTGCTTACAGTGAAAAA 1410
consensus_14652#2 --------------------
consensus_14652#4 --------------------
consensus_14652#1 --------------------
consensus_14652#3 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||