These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1478 fasta sequence [CAGCGTCAGCGAGAAGCAGCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCCGTCGCCGCCGCCGCCTCCTCCGCCGGTGCCACACTCGCCGTCAAAGCTCCAGTTCCAGTTCCAGTTCCAGCTCCTGCCCCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA---AGGCCTCCTCATCAATGGCAACTTCGAGACGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCAC-TCGC-TGCCGGGGTGGACGC-TGCGGGGGCACGTCGAGTACGTCTCCGGCGGGCCGCAGCCCGGCGGCATGTTCTTCGCGGTGCCGCACGGCGTGCACGCTCTCCGCCTGGGCGGCCGCGCGTCGGCGTCCCAGAACGTGTCCGTGCGCCCCGGCGCGCTCTACGCGCTCACCTTCGCCGCCACGCGCACGTGCGCCCAGGACGAGGCGCTCCGCGTCGCCGTCGCGCCGTCGCTCTCGCCGCCCGCCGACGTCGCCGTCCGCACGCTCTACAGCGCCGACACCGCCGACACCTGGGCGTGGGGCTTCCGCGCCTCCTCCGCCGCCGCGCAGGTCACCTTCTCCAACCCCGGCGTCCAGGAGGACGCGTCGTGCGGCCCCCTGCTCGACGCCGTCGCCATCAAGGAGCTCCCAACGCCATACCCAACCAAAGACAACCTGATCAAGAACGAGGGATTCGAGATCGGGCCGCAGGTGTTCAAGAACTCGACGGTGGGCGTCCTCCTTCCGCCGAAGCAGAAGGACGCGACGTCGCCGCTCCCGGGCTGGATCATCGAGTCGCTCAAGGCCGTCCGCTTCATCGACGCGGCGCACTTCTCCGTCCCGGCGGGGCAGTACGCCGTGGAGCTCGTCGCCGGCAGGGAGAGCGCCATCGCGC-AGGTGATCCGCACGGTGGCGAACCGCGCCTACAACCTATCGTTCGTCGTCGGCGACGCCAAGAACGGC-TGCCACGGGTCGATGC-TGGTGGAGGCGTTCGCCGGGAACGTGACGCAGAAGGTGCCGTTCGAGTCCGTCGGAAACGGCGGGTTCAAGCCGGCGAGCTTCCGGTTC-GTCGCCGCCGGCGTGCGCACCAGGGTGACCTTCTACAGCTCGTACTACCACACCAAGGTGAGCGACGGCGTCTCGCTGTGCGGCCCCGTGCTGGATCAGGTCAAGGTCCAGCCATTGAAGGCGTGATGATCCCCCTACGATTCAGAGCTCTCCTTTCGGATCATGGTTTGCTAATTGCTCTACTTAGACGTCGTGTCTGTAAAACTCTGCATTGGTGATTTGGGTTTTGGACATTGAACTTTCGTGGTGATCTAGCTAAACATTGTGTCATGGTTATTGTTGCCTGTAATGTCGCTATCGATCGTTGATGATGTTATCAACCGGATTGGCCACCAAAAAAAAAAAA] [+] EMBL AU166007 [CAGCGTCAGCGAGAAGCAGCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCCGTCGCCGCCGCCGCCTCCTCCGCCGGTGCCACACTCGCCGTCAAAGCTCCAGTTCCAGTTCCAGTTCCAGCTCCTGCCCCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGGCCTCCTCATCAATGGCAACTTCGAGACGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCAC TCGC TGCCGGGGTGGACGC TGCGGGGGCACGTCGAGTACGTCTCCGGCGGGCCGCAGCCCGGCGGCATGTTCTTCGCGGTGCCGCACGGCGTGCACGCT ] [+] EMBL AU029463 [CAGCGTCA NATGAAGCAGCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCCGTCGCCGCCGTCGCCTCCTCCGCNGGTGCCACACTCGCCGTCAAAGCTCCANTTCCAGTTCCAGTTCCAGCTCCTGCCCCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGG CTCCTCATCAATGG AACTTCGACACGGCGCCGAGGAATGTGAACAAGACACTCAa ] [+] EMBL AK059286 [ AGCGTCAGCGAGAAGCAGCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCCGTCGCCGCCGCCGCCTCCTCCGCCGGTGCCACACTCGCCGTCAAAGCTCCAGTTCCAGTTCCAGTTCCAGCTCCTGCCCCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGGCCTCCTCATCAATGGCAACTTCGAGACGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCAC TCGC TGCCGGGGTGGACGC TGCGGGGGCACGTCGAGTACGTCTCCGGCGGGCCGCAGCCCGGCGGCATGTTCTTCGCGGTGCCGCACGGCGTGCACGCTCTCCGCCTGGGCGGCCGCGCGTCGGCGTCCCAGAACGTGTCCGTGCGCCCCGGCGCGCTCTACGCGCTCACCTTCGCCGCCACGCGCACGTGCGCCCAGGACGAGGCGCTCCGCGTCGCCGTCGCGCCGTCGCTCTCGCCGCCCGCCGACGTCGCCGTCCGCACGCTCTACAGCGCCGACACCGCCGACACCTGGGCGTGGGGCTTCCGCGCCTCCTCCGCCGCCGCGCAGGTCACCTTCTCCAACCCCGGCGTCCAGGAGGACGCGTCGTGCGGCCCCCTGCTCGACGCCGTCGCCATCAAGGAGCTCCCAACGCCATACCCAACCAAAGACAACCTGATCAAGAACGAGGGATTCGAGATCGGGCCGCAGGTGTTCAAGAACTCGACGGTGGGCGTCCTCCTTCCGCCGAAGCAGAAGGACGCGACGTCGCCGCTCCCGGGCTGGATCATCGAGTCGCTCAAGGCCGTCCGCTTCATCGACGCGGCGCACTTCTCCGTCCCGGCGGGGCAGTACGCCGTGGAGCTCGTCGCCGGCAGGGAGAGCGCCATCGCGC AGGTGATCCGCACGGTGGCGAACCGCGCCTACAACCTATCGTTCGTCGTCGGCGACGCCAAGAACGGC TGCCACGGGTCGATGC TGGTGGAGGCGTTCGCCGGGAACGTGACGCAGAAGGTGCCGTTCGAGTCCGTCGGAAACGGCGGGTTCAAGCCGGCGAGCTTCCGGTTC GTCGCCGCCGGCGTGCGCACCAGGGTGACCTTCTACAGCTCGTACTACCACACCAAGGTGAGCGACGGCGTCTCGCTGTGCGGCCCCGTGCTGGATCAGGTCAAGGTCCAGCCATTGAAGGCGTGATGATCCCCCTACGATTCAGAGCTCTCCTTTCGGATCATGGTTTGCTAATTGCTCTACTTAGACGTCGTGTCTGTAAAACTCTGCATTGGTGATTTGGGTTTTGGACATTGAACTTTCGTG ] [+] EMBL AU166046 [ GAAGCAGCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCCGTCGCCGCCGCCGCCTCCTCCGCCGGTGCCACACTCGCCGTCAAAGCTCCAGTTCCAGTTCCAGTTCCAGCTCCTGCCCCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGGCCTCCTCATCAATGGCAACTTCGAGANGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCACTTCGCTTGCCGGGGTGGACGCTTGCGGGGGCACGTCGA ] [-] EMBL AU069959 [ gAGCAGCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCCGTCGCCGCCGCCGCCTCCTCCGCCGGTGCCACACTCGCCGTCAAAGCTCCAGTTCCAGTTCCAGTTCCAGCTCCTGCCCCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGGCCTCCTCATCAATGGCAACTTCGAGACGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCAC TCGC TGCCGGGGTGGACGC TGCGGGGGCACGTCGAGTACGTCTCCGGCGGGCCGCAGCCCGGCGGCATGTTCTTCGCGGTGCC NACGGCGTGCACGCT ] [+] EMBL AU166057 [ AGCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCCGTCGCCGCCGCCGCCTCCTCCGCCGGTGCCACACTCGCCGTCAAAGCTCCAGTTCCAGTTCCAGTTCCAGCTCCTGCCCCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGGCCTCCTCATCAATGGCAACTTCGAGACGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCAC TCGC TGCCGGGGTGGACGC TGCGGGGGCACGTCGAGTACGTCTCCGGCGGGCCGCAGCCCGGCGGCATGTTCTTCGCGGTGCCGCACGGCGTGCACGCT ] [+] EMBL AU164293 [ AGCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCCGTCGCCGCCGCCGCCTCCTCCGCCGGTGCCACACTCGCCGTCAAAGCTCCAGTTCCAGTTCCAGTTCCAGCTCCTGCCCCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGGCCTCCTCATCAATGGCAACTTCGAGACGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCAC TCGC TGCCGGGGTGGACGC TGCGGGGG ACGTCGAGTACGTCT CGGCGGGCCG A NCCGGCGGCATGT ] [+] EMBL AU161814 [ GCCAAAGTGAAAGCGAAAGAGAGCTGAACTCAGTGGAGGCTGGAGAGTGAGCTTACCAATGGAGCTTCCTCGGGGTGCCCTGCTGCTGGTGCTGCTCGCAGTCGCCGCCGCCGCCTCCTCCGNCGGTGNCACACTCGCCGTCAAAGNTCCAGTTCCAGTTCCAGTTCCAGNTCCTGCCCNTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGGCCTCCTCATCAATGGCAACTTCGAGANGGTGTCGAGGAAGGTGAACAAGAC ] [-] EMBL AU070137 [ CCTGCCCATGCACCTCCTCAACCTAAAGATGCTGA AGGCCTCCTCATCAATGGCAACTTCGAGACGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCAC TCGC TGCCGGNGTGGACGC TGCGGGGGCACGTCGAGTACGTCTCCGGCGGGCCGCAGCCCGGCGGCATGTTCTTCGCGGTGNCCCACGGCGTGCACGCTCTCCNCC ] [+] EMBL AK121037 [ tttttaATGGTGACCCAGGCCTCCTCATCAATGGCAACTTCGAGACGGCGCCGAGGAAGGTGAACAAGACACTCATCGTCGGCCGCCAC TCGC TGCCGGGGTGGACGC TGCGGGGGCACGTCGAGTACGTCTCCGGCGGGCCGCAGCCCGGCGGCATGTTCTTCGCGGTGCCGCACGGCGTGCACGCTCTCCGCCTGGGCGGCCGCGCGTCGGCGTCCCAGAACGTGTCCGTGCGCCCCGGCGCGCTCTACGCGCTCACCTTCGCCGCCACGCGCACGTGCGCCCAGGACGAGGCGCTCCGCGTCGCCGTCGCGCCGTCGCTCTCGCCGCCCGCCGACGTCGCCGTCCGCACGCTCTACAGCGCCGACACCGCCGACACCTGGGCGTGGGGCTTCCGCGCCTCCTCCGCCGCCGCGCAGGTCACCTTCTCCAACCCCGGCGTCCAGGAGGACGCGTCGTGCGGCCCCCTGCTCGACGCCGTCGCCATCAAGGAGCTCCCAACGCCATACCCAACCAAAGACAACCTGATCAAGAACGAGGGATTCGAGATCGGGCCGCAGGTGTTCAAGAACTCGACGGTGGGCGTCCTCCTTCCGCCGAAGCAGAAGGACGCGACGTCGCCGCTCCCGGGCTGGATCATCGAGTCGCTCAAGGCCGTCCGCTTCATCGACGCGGCGCACTTCTCCGTCCCGGCGGGGCAGTACGCCGTGGAGCTCGTCGCCGGCAGGGAGAGCGCCATCGCGC AGGTGATCCGCACGGTGGCGAACCGCGCCTACAACCTATCGTTCGTCGTCGGCGACGCCAAGAACGGC TGCCACGGGTCGATGC TGGTGGAGGCGTTCGCCGGGAACGTGACGCAGAAGGTGCCGTTCGAGTCCGTCGGAAACGGCGGGTTCAAGCCGGCGAGCTTCCGGTTC GTCGCCGCCGGCGTGCGCACCAGGGTGACCTTCTACAGCTCGTACTACCACACCAAGGTGAGCGACGGCGTCTCGCTGTGCGGCCCCGTGCTGGATCAGGTCAAGGTCCAGCCATTGAAGGCGTGATGATCCCCCTACGATTCAGAGCTCTCCTTTAGGATCATGGTTTGCTAATTGCTCTACTTAGACGTCGTGTCTGTAAAACTCTGCATTGGTGATTTGGGTTTTGGACATTGAACTTTCGTG ] [+] EMBL AU101950 [ TCCCAGAACGTGTCCGTGCGCCCCGGCG GCTCTACGCGCTCACCTTCGCCGCCACGCGCACGTGCGCCCAGGACGAGGCGCTCCGCGTCGCCGTCGCGCCGTCGCTCTCGCCGCCCGCCGACGTCGCCGTCCGCACGCTCTACAGCGCCGACACCGCCGACACCTGGGCGTGGGGCTTCCGCGCCTCCTCCGCCGCCGCGCAGGTCACCTTCTCCAACCCCGGCGTCCAGGAGGACGCGTCGTGCGGCCCCCTGCTCGANGCCGTCGCCATCAAGGAGCTCCCA ] [+] EMBL AU161634 [ AACGTGTCCGTGCGCCCCGGCGCGCTCTACGCGCTCACCTTCGCCGCCACGCGCACGTGCGCCCAGGACGAGGCGCTCCGCGTCGCCGTCGCGCCGTCGCTCTCGCCGCCCGCCGACGTCGCCGTCCGCACGCTCTACAGCGCCGACACCGCCGACACCTGGGCGTGGGGCTTCCGCGCCTCCTCCGCCGCCGCGCAGGTCACCTTCTCCAACCCCGGCGTCCAGGAGGACGCGTCGTGCGGCCCCCTGCTCGACGCCGTCGCCATCAAGGAGCTCCCAACGCCATACCCAACCAAAGACAACCTGATCAAGAACGAGGGATTCGAGATCGGGCCGCA GTGTTCAAGAACTCGACGGTGGGCGTCCTCCTT ] [+] EMBL AU176475 [ TCTACGCGCTCACCTTCGCCGCCACGCGCACGTGCGCCCAGGACGAGGCGCTCCGCGTCGCCGTCGCGCCGTCGCTCTCGCCGCCCGCCGACGTCGCCGTCCGCACGCTCTACAGCGCCGACACCGCCGACACCTGGGCGTGGGGCTTCCGCGCCTCCTCCGCCGCCGCGCAGGTCACCTTCTCCAACCCCGGCGTCCAGGAGGACGCGTCGTGCGGCCCCCTGCTCGACGCCGTCGCCATCAAGGAGCTCCCAACGCCATACCCAACCAAAGACAACCTG ] [+] EMBL C91755 [ CCTCCTTCCGCCGAAGCAGAAGGACGCGACGTCGCCGCTCCCGGGCTGGATCATCGAGTCGCTCAAGGCCGTCCGCTTCATCGACGCGGCGCACTTCTCCGTCCCGGCGGGGCAGTACGCCGTGGAGCTCGTCGCCGGCAGGGAGAGCGCCATCGCGC AGGTGATCCGCACGGTGGCGAACCGCGCCTACAACCTATCGTTCGTCGTCGGCGACGCCAAGAACGGCTTGCCACGGGTCGATGCTTGGTGGAGGCGTTCGCCGNGAACGTGACGCAGAAGGTGCCGTTCGAGTNCGTCGGAAACGGCGGGTTCAAGCCGGCGAGTTTCCG ] [+] EMBL AU161633 [ ctCGTTCCCGCCGGGCAGTACCCCTTGAAACTCNTCGCCGGCAGGAAGAGCNCCATCGCGCAAGTTGATCCGCACGGTGGCGAACCGCGCCTAAAACCTATCGTTCGTCGTC GCGACGCCAAGAACGGC TGCCACGGGTCGATGC TGGTGGAGGCGTTCGCCGGGAACGTGACGCAGAAGGTGCCGTTCGAGTCCGTCGGAAACGGCGGGTTCAAGCCGGCGAGCTTCCGGTTC GTC CCGCCGGCGTGCGCACCAGGGTGACCTTCTACAGCTCGTACTACCACACCAAGGTGAGCGACGGCGTCTCGCTGTGCGGCCCCGTGCTGGATCAGGTCAAGGTCCAGCCATTGAAGGCGTGATGATCCCCCTACGATTCAGAGCTCTCCTTTCGGATCATGGTTTGCTAATTGCTCTACTTAGACGTCGTGTCTGTAAAACTCTGCATTGGTGATTTGGGTTTTGGACATTGAACTTTCGT GTGATCTAGCTAAACATTGTGTCATGGTTATTGTTGCCTGTAATGTCGCTATCGATCGTTGATGATGTTATCAACCGGATTGGCCACCAAAAA ] [+] EMBL AU101949 [ natC TGTTGGAAGC TTCGCCGGGAACGTGACGCAGAA GTGCCGTTCGAGTCCGTCGGAAACGGC GGTTCAAGCCGGCGAGCTTCCGGTTCGGTC CCGCCGGCGTGCGCACCAGGGTGACCTTCTACAGCTCGTACTACCACACCAAGGTGAGCGACGGCGTCTCGCTGTGCGGCCCCGTGCTGGATCAGGTCAAGGTCCAGCCATTGAAGGCGTGATGATCCCCCTACGATTCAGAGCTCTCCTTTCGGATCATGGTTTGCTAATTGCTCTACTTAGACGTCGTGTCTGTAAAACTCTGCATTGGTGATTTGGGTTTTGGACATTGAACTTTCGT GTGATCTAGCTAAACATTGTGTCATGGTTATTGTTGCCTGTAATGTCGCTATCGATCGTTGATGATGTTATCAACCGGATTGGCNNCCAAAAA ] [+] EMBL AU172843 [ TTCGCCGGGAACGTGACGCANAAGGTGCCGTTCGAGTCCGTCGGAAACGGCGGGTTCAAGCCGGCGAGCTTCCGGTTC GTCGCCGCCGGCGTGCGCACCAGGGTGACCTTNTACAGCTCGTACTACCACACCAAGGTGAGCGACGGCGTCTCGCTGTGCGGCCCCGTGCTGGATCAGGTCAAGGTCCAGCCATTGAAGGCGTGATGATCCCCCTACGATTCAGAGCTCTCCTTTCGGATCATGGTTTGCTAATTGCTCTACTTAGACGTCGTGTCTGTAAAACTCTGCATTGGTGATTTGGGTTTTGGACATTGAACTTTCGGTGTGATCTAGCTAAACATTGTGTCATGGTTATTGTTGCCTGTAATGTCGCTATCGATCGTTGATGATGTTATCAACCGGATTGGCCACCAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||