These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [AAGGGGGAGTACCAAATTGTTAAACTGAAACCCTCACTCACAACATTGCTCTGCAGTCCCAACCATGGATCACCAAGAACTAGAAGATGGAGCTGAGAAGGTGAAGCTGTTAGGCATATGGTCAAGCCCTTAAGGTGTCAAAGTGATGTGGGCACTAAGGATCAAAGGCGTGGAGTATGACTACATCGAGGAGGATCTGAGGAACAAGAGCAACTTGCTTCTGGAGTGCAACCCCGTGCATAAGAAGGTCCCCGTGCTGATCTATCAAGGCAAGCCGATTGCTGAATCAGACGTCATACTGGAGTTCATCGATGATGTCTGGAAGGATTTGAGATACCGTATCTTGCCTGAAGATCCCTATGAATGTGCCATGGCACGTTTCTGGTCCAAATTTGGGCTGGACAAGCTGTCACCTCCAATTTGGAAGTGGTTCACCACACAAGGCAAGGAGCAGGAGGATGCATACGAAGCTGCCATGGAGCAGCTGCTGGTTCTGGAAAAGGTGCTCGATGAGAAGAAATTCTTTGGTGGAGAGAGGATCGGGTTCGTCGACTTGTCTCTGGGCTCCCTGTCGTATGTGATTCCGATATATGAGGACATCACCGGTGTCAGGCTGATCACCAGCGACAAGNTCCCTTGGCTGTCTGCATGGATGGAAGGGTTTTCTGGGCTTGCCACTCGTGAAGGAACATCTGCTGNCTNTGGACAAGCTACNGGCCAAGTATCAAGCAATTCGCGAAGCATTTTTATCTAAATAGAANCAGTTGGTTANTANCANATGCTGATATACTGCTCTCTTCAATGNT] [+] EMBL CA766745 [AAGGGGGAGTACCAAATTGTTAAACTGAAACCCTCACTCACAACATTGCTCTGCAGTCCCAACCATGGATCACCAAGAACTAGAAGATGGAGCTGAGAAGGTGAAGCTGTTAGGCATATGGTCAAGCCCTTAAGGTGTCAAAGTGATGTGGGCACTAAGGATCAAAGGCGTGGAGTATGACTACATCGAGGAGGATCTGAGGAACAAGAGCAACTTGCTTCTGGAGTGCAACCCCGTGCATAAGAAGGTCCCCGTGCTGATCTATCAAGGCAAGCCGATTGCTGAATCAGACGTCATACTGGAGTTCATCGATGATGTCTGGAAGGATTTGAGATACCGTATCTTGCCTGAAGATCCCTATGAATGTGCCATGGCACGTTTCTGGTCCAAATTTGGGCTGGACAAGCTGTCACCTCCAATTTGGAAGTGGTTCACCACACAAGGCAAGGAGCAGGAGGATGCATACGAAGCTGCCATGGAGCAGCTGCTGGTTCTGGAAAAGGTGCTCGATGAGAAGAAATTCTTTGGTGGAGAGAGGATCGGGTTCGTCGACTTGTCTCTGGGCTCCCTGTCGTATGTGATTCCGATATATGAGGACATCACCGGTGTCAGGCTGATCACCAGCGACAAGNTCCCTTGGCTGTCTGCATGGATGGAAGGGTTTTCTGGGCTTGCCACTCGTGAAGGAACATCTGCTGNCTNTGGACAAGCTACNGGCCAAGTATCAAGCAATTCGCGAAGCATTTTTATCTAAATAGAANCAGTTGGTTANTANCANATGCTGATATACTGCTCTCTTCAATGNT] consensusID : consensus_1470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 140 fasta sequence [CTTGCATGGATGGAGGTTTTCTGGGCATTGCCACTCGTGATAGGTACATCTGCTGCCTCTGGACAAGCATACGGCCCAGGTATCAAAGCAATTCGCGAAGCATTTTTATCTAAATAGAAGCAGTTGGTTAGTAGCAGATG] [+] EMBL BI807903 [CTTGCATGGATGGAGGTTTTCTGGGCATTGCCACTCGTGATAGGTACATCTGCTGCCTCTGGACAAGCATACGGCCCAGGTATCAAAGCAATTCGCGAAGCATTTTTATCTAAATAGAAGCAGTTGGTTAGTAGCAGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1470#0 AAGGGGGAGTACCAAATTGTTAAACTGAAACCCTCACTCACAACATTGCTCTGCAGTCCC 60 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 AACCATGGATCACCAAGAACTAGAAGATGGAGCTGAGAAGGTGAAGCTGTTAGGCATATG 120 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 GTCAAGCCCTTAAGGTGTCAAAGTGATGTGGGCACTAAGGATCAAAGGCGTGGAGTATGA 180 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 CTACATCGAGGAGGATCTGAGGAACAAGAGCAACTTGCTTCTGGAGTGCAACCCCGTGCA 240 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 TAAGAAGGTCCCCGTGCTGATCTATCAAGGCAAGCCGATTGCTGAATCAGACGTCATACT 300 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 GGAGTTCATCGATGATGTCTGGAAGGATTTGAGATACCGTATCTTGCCTGAAGATCCCTA 360 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 TGAATGTGCCATGGCACGTTTCTGGTCCAAATTTGGGCTGGACAAGCTGTCACCTCCAAT 420 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 TTGGAAGTGGTTCACCACACAAGGCAAGGAGCAGGAGGATGCATACGAAGCTGCCATGGA 480 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 GCAGCTGCTGGTTCTGGAAAAGGTGCTCGATGAGAAGAAATTCTTTGGTGGAGAGAGGAT 540 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 CGGGTTCGTCGACTTGTCTCTGGGCTCCCTGTCGTATGTGATTCCGATATATGAGGACAT 600 consensus_1470#1 ------------------------------------------------------------ consensus_1470#0 CACCGGTGTCAGGCTGATCACCAGCGACAAGNTCCCTTGGCTGTCTGCATGGATGGAAGG 660 consensus_1470#1 -------------------------------------------CTTGCATGGATGGA--G 15 ************ * consensus_1470#0 GTTTTCTGGGC-TTGCCACTCGTGA-AGGAACATCTGCTGNCTNTGGACAAGC-TACNGG 717 consensus_1470#1 GTTTTCTGGGCATTGCCACTCGTGATAGGTACATCTGCTGCCTCTGGACAAGCATACGGC 75 *********** ************* *** ********** ** ********* *** * consensus_1470#0 CCAAGTATCAA-GCAATTCGCGAAGCATTTTTATCTAAATAGAANCAGTTGGTTANTANC 776 consensus_1470#1 CCAGGTATCAAAGCAATTCGCGAAGCATTTTTATCTAAATAGAAGCAGTTGGTTAGTAGC 135 *** ******* ******************************** ********** ** * consensus_1470#0 ANATGCTGATATACTGCTCTCTTCAATGNT 806 consensus_1470#1 AGATG------------------------- 140 * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||