cluster # 1470

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Oryza sativa
cluster # 1470 cluster # 1470 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1470#0 length = 806 sequences # 1

consensus_1470#1 length = 140 sequences # 1

consensusID : consensus_1470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 806
fasta sequence

                              [AAGGGGGAGTACCAAATTGTTAAACTGAAACCCTCACTCACAACATTGCTCTGCAGTCCCAACCATGGATCACCAAGAACTAGAAGATGGAGCTGAGAAGGTGAAGCTGTTAGGCATATGGTCAAGCCCTTAAGGTGTCAAAGTGATGTGGGCACTAAGGATCAAAGGCGTGGAGTATGACTACATCGAGGAGGATCTGAGGAACAAGAGCAACTTGCTTCTGGAGTGCAACCCCGTGCATAAGAAGGTCCCCGTGCTGATCTATCAAGGCAAGCCGATTGCTGAATCAGACGTCATACTGGAGTTCATCGATGATGTCTGGAAGGATTTGAGATACCGTATCTTGCCTGAAGATCCCTATGAATGTGCCATGGCACGTTTCTGGTCCAAATTTGGGCTGGACAAGCTGTCACCTCCAATTTGGAAGTGGTTCACCACACAAGGCAAGGAGCAGGAGGATGCATACGAAGCTGCCATGGAGCAGCTGCTGGTTCTGGAAAAGGTGCTCGATGAGAAGAAATTCTTTGGTGGAGAGAGGATCGGGTTCGTCGACTTGTCTCTGGGCTCCCTGTCGTATGTGATTCCGATATATGAGGACATCACCGGTGTCAGGCTGATCACCAGCGACAAGNTCCCTTGGCTGTCTGCATGGATGGAAGGGTTTTCTGGGCTTGCCACTCGTGAAGGAACATCTGCTGNCTNTGGACAAGCTACNGGCCAAGTATCAAGCAATTCGCGAAGCATTTTTATCTAAATAGAANCAGTTGGTTANTANCANATGCTGATATACTGCTCTCTTCAATGNT]

[+] EMBL CA766745             [AAGGGGGAGTACCAAATTGTTAAACTGAAACCCTCACTCACAACATTGCTCTGCAGTCCCAACCATGGATCACCAAGAACTAGAAGATGGAGCTGAGAAGGTGAAGCTGTTAGGCATATGGTCAAGCCCTTAAGGTGTCAAAGTGATGTGGGCACTAAGGATCAAAGGCGTGGAGTATGACTACATCGAGGAGGATCTGAGGAACAAGAGCAACTTGCTTCTGGAGTGCAACCCCGTGCATAAGAAGGTCCCCGTGCTGATCTATCAAGGCAAGCCGATTGCTGAATCAGACGTCATACTGGAGTTCATCGATGATGTCTGGAAGGATTTGAGATACCGTATCTTGCCTGAAGATCCCTATGAATGTGCCATGGCACGTTTCTGGTCCAAATTTGGGCTGGACAAGCTGTCACCTCCAATTTGGAAGTGGTTCACCACACAAGGCAAGGAGCAGGAGGATGCATACGAAGCTGCCATGGAGCAGCTGCTGGTTCTGGAAAAGGTGCTCGATGAGAAGAAATTCTTTGGTGGAGAGAGGATCGGGTTCGTCGACTTGTCTCTGGGCTCCCTGTCGTATGTGATTCCGATATATGAGGACATCACCGGTGTCAGGCTGATCACCAGCGACAAGNTCCCTTGGCTGTCTGCATGGATGGAAGGGTTTTCTGGGCTTGCCACTCGTGAAGGAACATCTGCTGNCTNTGGACAAGCTACNGGCCAAGTATCAAGCAATTCGCGAAGCATTTTTATCTAAATAGAANCAGTTGGTTANTANCANATGCTGATATACTGCTCTCTTCAATGNT]




>consensus_1470#0
AAGGGGGAGTACCAAATTGTTAAACTGAAACCCTCACTCACAACATTGCTCTGCAGTCCC
AACCATGGATCACCAAGAACTAGAAGATGGAGCTGAGAAGGTGAAGCTGTTAGGCATATG
GTCAAGCCCTTAAGGTGTCAAAGTGATGTGGGCACTAAGGATCAAAGGCGTGGAGTATGA
CTACATCGAGGAGGATCTGAGGAACAAGAGCAACTTGCTTCTGGAGTGCAACCCCGTGCA
TAAGAAGGTCCCCGTGCTGATCTATCAAGGCAAGCCGATTGCTGAATCAGACGTCATACT
GGAGTTCATCGATGATGTCTGGAAGGATTTGAGATACCGTATCTTGCCTGAAGATCCCTA
TGAATGTGCCATGGCACGTTTCTGGTCCAAATTTGGGCTGGACAAGCTGTCACCTCCAAT
TTGGAAGTGGTTCACCACACAAGGCAAGGAGCAGGAGGATGCATACGAAGCTGCCATGGA
GCAGCTGCTGGTTCTGGAAAAGGTGCTCGATGAGAAGAAATTCTTTGGTGGAGAGAGGAT
CGGGTTCGTCGACTTGTCTCTGGGCTCCCTGTCGTATGTGATTCCGATATATGAGGACAT
CACCGGTGTCAGGCTGATCACCAGCGACAAGNTCCCTTGGCTGTCTGCATGGATGGAAGG
GTTTTCTGGGCTTGCCACTCGTGAAGGAACATCTGCTGNCTNTGGACAAGCTACNGGCCA
AGTATCAAGCAATTCGCGAAGCATTTTTATCTAAATAGAANCAGTTGGTTANTANCANAT
GCTGATATACTGCTCTCTTCAATGNT

consensusID : consensus_1470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence

                              [CTTGCATGGATGGAGGTTTTCTGGGCATTGCCACTCGTGATAGGTACATCTGCTGCCTCTGGACAAGCATACGGCCCAGGTATCAAAGCAATTCGCGAAGCATTTTTATCTAAATAGAAGCAGTTGGTTAGTAGCAGATG]

[+] EMBL BI807903             [CTTGCATGGATGGAGGTTTTCTGGGCATTGCCACTCGTGATAGGTACATCTGCTGCCTCTGGACAAGCATACGGCCCAGGTATCAAAGCAATTCGCGAAGCATTTTTATCTAAATAGAAGCAGTTGGTTAGTAGCAGATG]




>consensus_1470#1
CTTGCATGGATGGAGGTTTTCTGGGCATTGCCACTCGTGATAGGTACATCTGCTGCCTCT
GGACAAGCATACGGCCCAGGTATCAAAGCAATTCGCGAAGCATTTTTATCTAAATAGAAG
CAGTTGGTTAGTAGCAGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1470#0      AAGGGGGAGTACCAAATTGTTAAACTGAAACCCTCACTCACAACATTGCTCTGCAGTCCC 60
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      AACCATGGATCACCAAGAACTAGAAGATGGAGCTGAGAAGGTGAAGCTGTTAGGCATATG 120
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      GTCAAGCCCTTAAGGTGTCAAAGTGATGTGGGCACTAAGGATCAAAGGCGTGGAGTATGA 180
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      CTACATCGAGGAGGATCTGAGGAACAAGAGCAACTTGCTTCTGGAGTGCAACCCCGTGCA 240
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      TAAGAAGGTCCCCGTGCTGATCTATCAAGGCAAGCCGATTGCTGAATCAGACGTCATACT 300
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      GGAGTTCATCGATGATGTCTGGAAGGATTTGAGATACCGTATCTTGCCTGAAGATCCCTA 360
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      TGAATGTGCCATGGCACGTTTCTGGTCCAAATTTGGGCTGGACAAGCTGTCACCTCCAAT 420
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      TTGGAAGTGGTTCACCACACAAGGCAAGGAGCAGGAGGATGCATACGAAGCTGCCATGGA 480
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      GCAGCTGCTGGTTCTGGAAAAGGTGCTCGATGAGAAGAAATTCTTTGGTGGAGAGAGGAT 540
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      CGGGTTCGTCGACTTGTCTCTGGGCTCCCTGTCGTATGTGATTCCGATATATGAGGACAT 600
consensus_1470#1      ------------------------------------------------------------
                                                                                  

consensus_1470#0      CACCGGTGTCAGGCTGATCACCAGCGACAAGNTCCCTTGGCTGTCTGCATGGATGGAAGG 660
consensus_1470#1      -------------------------------------------CTTGCATGGATGGA--G 15
                                                                   ************  *

consensus_1470#0      GTTTTCTGGGC-TTGCCACTCGTGA-AGGAACATCTGCTGNCTNTGGACAAGC-TACNGG 717
consensus_1470#1      GTTTTCTGGGCATTGCCACTCGTGATAGGTACATCTGCTGCCTCTGGACAAGCATACGGC 75
                      *********** ************* *** ********** ** ********* *** * 

consensus_1470#0      CCAAGTATCAA-GCAATTCGCGAAGCATTTTTATCTAAATAGAANCAGTTGGTTANTANC 776
consensus_1470#1      CCAGGTATCAAAGCAATTCGCGAAGCATTTTTATCTAAATAGAAGCAGTTGGTTAGTAGC 135
                      *** ******* ******************************** ********** ** *

consensus_1470#0      ANATGCTGATATACTGCTCTCTTCAATGNT 806
consensus_1470#1      AGATG------------------------- 140
                      * ***