These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 2203 fasta sequence [TCGGTCAAATCCTCTTCTCGTCGGCTCCGGCGTGCATGCCAGCGGCGGCGGCGGCGGCGAGAAACGCTGGCGAGGAGGCAGCGGCGAGCGCTTAGATGCTAGCGAACCAGCGAAGAGGGCACTGCAGCAGTGGCGGATAGGCGGAGGCTAGAAGGGAGCAGTACGGCCAGAGAGCTAGGGTTTGGGTAATTTGGCGAGCGAGGAGCGAGGGGAGGCGAAGGGAGAAGAGGGGGGGGGGGGGGGGAGGAGAAAGAGCGGGGGAGGGATGAGCATAGTGCCCAAAGAGACGATTGAGGTGATCGGGCAGAGCGTCGGCATCGCCAACCTCCCAGCCGATGTCTCCGCCGCGCTCGCCCCCGACGTGGAGTACCGCCTCCGCGAGATCATGCAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCAGCCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGGTTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAACCCGGGTGACAAGGACGTTGGTCCAGGGATTTCTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCAAGGGATATCTGCATTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGACATACATGCAGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT-CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT-AGGCTGGT-CTTGT-GGAATTCTTGAAACTG-AAATTGACGTCTA-GGAATCTTGTAGTGATCTCTGATGCTAGA-TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC-GCCATTTTATGGCATATGTACATTTTTGAACCTTACTGATTAAGCAGAGTTGTCGTTGACATGTGCTAAAAAAAAAAAA] [+] EMBL AK120931 [TCGGTCAAATCCTCTTCTCGTCGGCTCCGGCGTGCATGCCAGCGGCGGCGGCGGCGGCGAGAAACGCTGGCGAGGAGGCAGCGGCGAGCGCTTAGATGCTAGCGAACCAGCGAAGAGGGCACTGCAGCAGTGGCGGATAGGCGGAGGCTAGAAGGGAGCAGTACGGCCAGAGAGCTAGGGTTTGGGTAATTTGGCGAGCGAGGAGCGAGGGGAGGCGAAGGGAGAAGAGGGGGGGGGGGGGGGGAGGAGAAAGAGCGGGGGAGGGATGAGCATAGTGCCCAAAGAGACGATTGAGGTGATCGGGCAGAGCGTCGGCATCGCCAACCTCCCAGCCGATGTCTCCGCCGCGCTCGCCCCCGACGTGGAGTACCGCCTCCGCGAGATCATGCAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCAGCCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGGTTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAACCCGGGTGACAAGGACGTTGGTCCAGGGATTTCTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCAAGGGATATCTGCATTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGACATACATGCAGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTC ] [+] EMBL CB677763 [ gcccttTGCCCAAAGAGACGATTGAGGTGATCGGGCAGAGCGTCGGCATCGCCAACCTCCCCGCCGATGTCTCCGCCGCGCTCGCCCCCGACGTGGAGTACCGCCTCCGCGAGATCATGCAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCAGCCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCA ] [+] EMBL AU164838 [ ACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGGTTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAA ] [+] EMBL C27079 [ ntntnGCNAAAAGGCTTGGGCATAGGCTTTCANACAACCATTGGNAGCTTAGAGACTTCTCTNCTAATTTGGTTGGTTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAACCCGGGTGACAAGGACGTTGGTCCAGGGATTNNTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCANGGGATATCTNCATTGGGGCCCAGTGCAATTAGGCTTCTCCTTTNCNCCAACCTCGAGACATACATGCNGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAANTGAGATG ] [+] EMBL OSR21831A [ TGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCAAGGGATATCTGCATTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGACATACATGCAGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAAT ] [+] EMBL CA766146 [ TTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGACATACATGCAGCTTTTAGAGCCGGAATTACACCTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGNAATAAGAGAGTCGCGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGGTCAGAGCTATGTAATATGCATTGTACCATTAAGCCTGGTNCTTGTGGGAGTTCTTGAAACTGAAAATTGACGTCTAGGGAATCTTGTAGTGATCTCTGATGCTAGATTTTAATCGCTTG ] [-] EMBL CB619726 [ CTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTAAAGGTGC GCCATTTTATGGCATATGT ] [-] EMBL CB677764 [ GAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACAATGGTGACCCTTACTGATTAAGCAGAGTTGTCGTTG ] [+] EMBL CB097138 [ AAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACATTTTTGAACCTTACTGATTAAGCAGAGTTGTCGTTGAC ] [-] EMBL CA763110 [ aatTCGTGACTAACAACCCAATTAAACGGAAGTCTAGTCCAAATCTCTCCCCATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTTTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACATTTTTGAACCTTACTGATTAAGCAGAGTTGTCGTTGACATGTGCTAAAAAAAAAAAA] [+] EMBL BI810115 [ GCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCT GGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCCAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAA CCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGC AATGCATAGTGTTCAGAGCTATGTAATATGC TTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAAC TTTTATTAaaaaa ] [+] EMBL AU184405 [ ATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGCGGCCATTTTATGGCATATGTACATTTTTGAACCTTAaaaaaaaa ] [+] EMBL AU031414 [ CTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCATCCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCNCCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACATTTTTGAAaaaa ] [+] EMBL AU055939 [ cAGTGTTCAGAGCTATGTAATANGCATTGTNCCGNT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACATTTTTGAACCTTAaaaa ] consensusID : consensus_14700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [TCATACCTATGCAATATATTGGACGGAAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCATTCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATTGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTT] [+] EMBL CB619725 [TCATACCTATGCAATATATTGGACGGAAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCATTCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATTGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTT] consensusID : consensus_14700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CGGAGGGATCAGGGAACAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAATGCTGGCCATCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTTGTTAGGAAAGCCAAAAATGGCAATTAAGTGTTTTCCAAGGAAGCCTTATTGTTAAATATGCCACTTTGGGTTAACCCACTTAGGCTGGTCTTGTGGAATTCTTGAAACTGAAATTGACGTCTAGGAATCTTGTAGTGATCTCTGATGCTAGATTTAATCGCTTGGTGACTTGCTGCTCATATTTTATGTGCTGATTTCTTGAATTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACTTTTATTACGCTCTACTGGTGCCCTTTTATGGCATATGTACATTTTTGAAAAAAAAA] [+] EMBL BI810808 [CGGAGGGATCAGGGAACAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAATGCTGGCCATCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTTGTTAGGAAAGCCAAAAATGGCAATTAAGTGTTTTCCAAGGAAGCCTTATTGTTAAATATGCCACTTTGGGTTAACCCACTTAGGCTGGTCTTGTGGAATTCTTGAAACTGAAATTGACGTCTAGGAATCTTGTAGTGATCTCTGATGCTAGATTTAATCGCTTGGTGACTTGCTGCTCATATTTTATGTGCTGATTTCTTGAATTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACTTTTATTACGCTCTACTGGTGCCCTTTTATGGCATATGTACATTTTTGAAAAAAAAA] consensusID : consensus_14700#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [CAGAGNTCACTACAGGNTCCCTAGACGTCAATTTCAGTTTCNAGAATTCCCCNAGGCCNGCCTTANTGGTACAATGCATATTACATAGCTCTGAACACTATGCATTTGCTTCCTACAAAATGCTGGGCATCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTNCCCCAAGACC] [-] EMBL AU055938 [CAGAGNTCACTACAGGNTCCCTAGACGTCAATTTCAGTTTCNAGAATTCCCCNAGGCCNGCCTTANTGGTACAATGCATATTACATAGCTCTGAACACTATGCATTTGCTTCCTACAAAATGCTGGGCATCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTNCCCCAAGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TCGGTCAAATCCTCTTCTCGTCGGCTCCGGCGTGCATGCCAGCGGCGGCGGCGGCGGCGA 60 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 GAAACGCTGGCGAGGAGGCAGCGGCGAGCGCTTAGATGCTAGCGAACCAGCGAAGAGGGC 120 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 ACTGCAGCAGTGGCGGATAGGCGGAGGCTAGAAGGGAGCAGTACGGCCAGAGAGCTAGGG 180 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TTTGGGTAATTTGGCGAGCGAGGAGCGAGGGGAGGCGAAGGGAGAAGAGGGGGGGGGGGG 240 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 GGGGAGGAGAAAGAGCGGGGGAGGGATGAGCATAGTGCCCAAAGAGACGATTGAGGTGAT 300 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 CGGGCAGAGCGTCGGCATCGCCAACCTCCCAGCCGATGTCTCCGCCGCGCTCGCCCCCGA 360 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 CGTGGAGTACCGCCTCCGCGAGATCATGCAGGAGGCCATCAAGTGTATGCGGCATGCAAA 420 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 GAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCC 480 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGA 540 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACC 600 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCAGCC 660 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGAC 720 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 AGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTT 780 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 ATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGA 840 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 AACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTT 900 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 GGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCC 960 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATAT 1020 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCT 1080 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGG 1140 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAACCCGGGTGACAAGGAC 1200 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 GTTGGTCCAGGGATTTCTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCA 1260 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 AGGGATATCTGCATTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGAC 1320 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 ATACATGCAGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAG 1380 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 AAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGA 1440 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAA 1500 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATC 1560 consensus_14700#1 ------------------------------------------------------------ consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 CCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCC 1620 consensus_14700#1 ---------------TCATACCTATGCAATATATTGGACGGAAGGAGGCCATCAAGTGTA 45 consensus_14700#2 ------------------------------------------------------------ consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 CATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAAC 1680 consensus_14700#1 TGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCA 105 consensus_14700#2 --------------------------------------------------CGGAGGGATC 10 consensus_14700#3 -------CAGAGNTCACTACAGGNTCCCT--AGACGTCAATTTCAGTTTCNAGAATTCCC 51 consensus_14700#0 TTCATCCTCTGGGCAATTGGTGGAAAGCA--CCGCATCAGGTGTGATT--CGGAGGGATC 1736 consensus_14700#1 GGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTG 165 ** consensus_14700#2 AGGGAA-CAA----CCACAC----GCAAAGAGT-TTCCACAGTGCTGAG-GCTA-GCCTG 58 consensus_14700#3 CNAGGC-CNG----CCTTANTGGTACAATGCATATTACATAGCTCTGAACACTATGCATT 106 consensus_14700#0 AGGGAAGCAA----CCACAC----GCAAAGAGT-TTCCACAGTGCTGAG-GCTA-GCCTG 1785 consensus_14700#1 TGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTG 225 * * * * * ** * * * * consensus_14700#2 GA--AGGAGGAC-CAAA-----TGCTGG-CCATCTGTTG-AGTTCATTGTACGAGGTATT 108 consensus_14700#3 TG--CTTCCTAC-AAAA-----TGCTGG-GCATCTGTTG-AGTTCATTGTACGAGGTATT 156 consensus_14700#0 GA--AGGAGGACCAAAA-----TGCTGG-GCATCTGTTG-AGTTCATTGTACGAGGTATT 1836 consensus_14700#1 AGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTG-GCTAGCCATT 284 ** *** * ** ** * **** ** *** ** * ** *** consensus_14700#2 CGGTGAAGCCATCTTCTCCTTT------GTTCAACCACCAGAGATATCGTTCTTTTTTGT 162 consensus_14700#3 CGGTGAAGCCATCTTCTCCTTT------GTTCAACCACCAGAGATATCGTTCTTTTTG-- 208 consensus_14700#0 CGGTGAAGCCATCTTCTCCTTT------GTTCAACCACCAGAGATATCGTTCTTTTTG-- 1888 consensus_14700#1 GAGGGAGTCCATTCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACA 344 * ** **** * ** * * * * ****** consensus_14700#2 TAGGAAAGCCAAAAATGGCAATTAAGTGTTTTCCAAGGAAGCCTTATTGTTAAATATGCC 222 consensus_14700#3 TAGGAAGCAAATGCATAGTG-TTCAGAGCTATGTAAT-ATGCATTGTNCCCCAAGACC-- 264 consensus_14700#0 TAGGAAGCAAATGCATAGTG-TTCAGAGCTATGTAAT-ATGCATTGTACCATTAGGC--- 1943 consensus_14700#1 GAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCT 404 ** * * * * * * * ** consensus_14700#2 ACTTTGGGTTAACCCACTTAGGCTGGTCTTGTGGAATTCTTGAAACTGAAATTGACGTCT 282 consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 -----------------------TGGTCTTGTGGAATTCTTGAAACTGAAATTGACGTCT 1980 consensus_14700#1 GTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACA 464 consensus_14700#2 AGGAATCTTGTAGTGATCTCTGATGCTAGATT--TAATCGCTTGGTGACTTGCTGCTC-- 338 consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 AGGAATCTTGTAGTGATCTCTGATGCTAGATT--TAATCGCTTGGTGACTTGCTGCTGCA 2038 consensus_14700#1 ATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCA 524 consensus_14700#2 ATATTTTATGTGCTGATTTCTTGAA-TTTTATGTTTATTGTAG-TAATTTTATCTAATGT 396 consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 ATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAG-TAATTTTATCTAATGT 2097 consensus_14700#1 GGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATTGCCGATGAGGTTACCCGGAGT 584 consensus_14700#2 AAAC-TTTTATTAC-GCTCTACTGGTGCCC--TTTTATGGCATATGTACATTTTTGAAAA 452 consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 AAACATTTTATTAC-GCTCTACTGGTGCGCCATTTTATGGCATATGTACATTTTTGAACC 2156 consensus_14700#1 TTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAAT 644 consensus_14700#2 AAAAA------------------------------------------------------- 457 consensus_14700#3 ------------------------------------------------------------ consensus_14700#0 TTACTGATTAAGCAGAGTTGTCGTTGACATGTGCTAAAAAAAAAAAA------------- 2203 consensus_14700#1 CCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATG 704 consensus_14700#2 ---------------------------- consensus_14700#3 ---------------------------- consensus_14700#0 ---------------------------- consensus_14700#1 GTTGCGAAAAGGCTTGGGCATAGGCTTT 732 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||