These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1312 fasta sequence [CCCACCACCGACACTCTCTCTTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCGCATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGCTGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGATGAAGGAGGTCGCCGCCTTCCTCGGCCACGTCGGCGCCAAGACCTCCTGTGGATATAGTGTCGCAACTGGTGGTCCATTGGCTTGGGGGCTTTGCTACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTA-TTGGAAC-AGAA-TGCGACCCTAGCATTT-GAAGCAGCAATC-TGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA-GAT-GAACGTCA-TTGTAT-CCCACTACCAACATTATCTCGACCTGAT-GGGTGTTGGTAGTGAC-AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTACACACTGAAGCAGATAATTCACATTCAAACATGCAATGACTGTTGTAAATAAGCATATAATTTCATTGCAGTTTGCTTAGAAAAAAAAAAAAA] [+] EMBL AK102814 [CCCACCACCGACACTCTCTCTTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCGCATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGCTGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGATGAAGGAGGTCGCCGCCTTCCTCGGCCACGTCGGCGCCAAGACCTCCTGTGGATATAGTGTCGCAACTGGTGGTCCATTGGCTTGGGGGCTTTGCTACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTA TTGGAAC AGAA TGCGACCCTAGCATTT GAAGCAGCAATC TGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA GAT GAACGTCA TTGTAT CCCACTACCAACATTATCTCGACCTGAT GGGTGTTGGTAGTGAC AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGTAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTACACACTGAAGCAGATAATTCACAT ] [+] EMBL AK106190 [ CACCACCGACACTCTCTCTTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCGCATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGCTGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGATGAAGGAGGTCGCCGCCTTCCTCGGCCACGTCGGCGCCAAGACCTCCTGTGGATATAGTGTCGCAACTGGTGGTCCATTGGCTTGGGGGCTTTGCTACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTA TTGGAAC AGAA TGCGACCCTAGCATTT GAAGCAGCAATC TGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA GAT GAACGTCA TTGTAT CCCACTACCAACATTATCTCGACCTGAT GGGTGTTGGTAGTGAC AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTACACACTGAAGCAGATAATTCACATTCAAACATGCAA ] [+] EMBL AK060080 [ CACCACCGACACTCTCTCTTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCGCATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGCTGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGATGAAGGAGGTCGCCGCCTTCCTCGGCCACGTCGGCGCCAAGACCTCCTGTGGATATAGTGTCGCAACTGGTGGTCCATTGGCTTGGGGGCTTTGCTACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTA TTGGAAC AGAA TGCGACCCTAGCATTT GAAGCAGCAATC TGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA GAT GAACGTCA TTGTAT CCCACTACCAACATTATCTCGACCTGAT GGGTGTTGGTAGTGAC AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTACACACTGAAGCAGATAATTCACAT ] [+] EMBL AK104718 [ CACCACCGACACTCTCTCTTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCGCATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGCTGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGATGAAGGAGGTCGCCGCCTTCCTCGGCCACGTCGGCGCCAAGACCTCCTGTGGATATAGTGTCGCAACTGGTGGTCCATTGGCTTGGGGGCTTTGCTACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTA TTGGAAC AGAA TGCGACCCTAGCATTT GAAGCAGCAATC TGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA GAT GAACGTCA TTGTAT CCCACTACCAACATTATCTCGACCTGAT GGGTGTTGGTAGTGAC AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTACACACTGAAGCAGATAATTCACAT ] [+] EMBL AU184509 [ CACTCTCTCTTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCGCATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGCTGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGG ] [+] EMBL CB654532 [ TCTCTCCTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCGCATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGCTGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGA ] [+] EMBL CB648102 [ TCTCTTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCGCATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGCTGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGA ] [+] EMBL C73571 [ ATATAGTGTCGCAACTGGTGGTCCATTGGCTTGGGGGCTTTGCTACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCNGTTGAACCACCCAGAGTTATTTGGAACAAGAATTGCGACCCTAGNATTTGGAAGCAGCAATCTTGGA ] [-] EMBL CB654533 [ GCTTGGGGGCTTTGCTACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTA TTGGAAC AGAA TGCGACCCTAGCATTT GAAGCAGCAATC TGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA GAT GAACGTCA TTGTAT CCCACTACCAACATTATCTCGACCTGAT GGGTGTTGGTAGTGAC AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGAAGGGATACATATTACACACTGAAGCAGATAATTCACAATAAAAgga ] [+] EMBL CA758839 [ GCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTA TTGGAAC AGAA TGCGACCCTAGCATTT GAAGCAGCAATC TGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA GAT GAACGTCA TTGTAT CCCACTACCAACATTATCTCGACCTGAT GGGTGTTGGTAGTGAC AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACGTGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTATACACTGAAGCAGATAATTCACATTCAAACATGCAATGACTGTTGTAAATAAGCATATAATTTCATTGCAGTTTGCTTAGAAAAAAAA ] [+] EMBL BE039573 [ AGCATTT GAAGCAGCAATC TGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA GAT GAACGTCA TTGTAT CCCACTACCAACATTATCTCGACCTGAT GGGTGTTGGTAGTGAC AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACGTGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTATACACTGAAGCAGATAATTCACATTCAAACATGCAATGACTGTTGTAAATAAGCATATAATTTCATTGCAGTTTGCTTAGAAAAAAAA ] [+] EMBL AU184510 [ GTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAA GAT GAACGTCA TTGTAT CCCACTACCAACATTATCTCGACCTGAT GGGTGTTGGTAGTGAC AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTACACACTGAAGCAGATAATTCACATTCAAAaaaa ] [+] EMBL AU030373 [ GGCTCCATCGTTAAGGNTGGACCGTCATTTGTATCCCCACTCCCAACATTTTCTCGNCCTGATGGGGTGTTGGTAGTGACNAAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCCCAAGTACCACCTGTGTTTGTTTGCGAAATTTGTAGCCTATTTATGTAAGTGTCCACTATGTTCTCTCATTTATATGTGACAATACATATTACACACTGAAGCAGATAATTCACATTCAAACATGCAATGACTGTTGTAAATAAGCATATAATTTCATTGCNGTTTGCTTNGAAAAAAAAAAAAA] consensusID : consensus_14703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 751 fasta sequence [ACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTATTGGAACAGAATGCGACCCTAGCATTTGAAGCAGCAATCTGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAAGATGAACGTCATTGTATCCCACTACCAACATTATCTCGACCTGATGGGTGTTGGTAGTGACAAAGTTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCTTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCNCCAAGTACCACCTGTGTTTGTTTGCGAAATTGGTAGCCTATTTATGTAAGTGTCCAATATGTTCTCTCATTTATATGTGACAATACATAGTACACACTGAAGCAGATAATTCCCATTCAAACAAAAAAAGGGA] [-] EMBL CB648103 [ACAACCATGAATTGAGCCCAAGCCAAAGCTATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAGGCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTATTGGAACAGAATGCGACCCTAGCATTTGAAGCAGCAATCTGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAAGATGAACGTCATTGTATCCCACTACCAACATTATCTCGACCTGATGGGTGTTGGTAGTGACAAAGTTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAATTTGGACTCTTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACAGACAGCTAGCTTCCCAAACAAAGAAAAGCGTATACATGGTACTTTTAATAGCTCNCCAAGTACCACCTGTGTTTGTTTGCGAAATTGGTAGCCTATTTATGTAAGTGTCCAATATGTTCTCTCATTTATATGTGACAATACATAGTACACACTGAAGCAGATAATTCCCATTCAAACAAAAAAAGGGA] [+] EMBL AU030372 [ TGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGGATCTGTTGAACCACCCAGAGTTATTGGAACAGAATGCGACCCTAGCATTTGAAGCAGCAATCTGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTGGCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTACAATGAACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAAGATGNACGTC ] consensusID : consensus_14703#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGATGAAGGAGGCACAAGGACGGCGGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACCTCGGCCACGTCGGCGCCAAGACCTCCTGTACGTGTGCTGCTCTTCTTCTTCTTCTTCTCGCTGATCGTTACTGTGATTTTACCAATTTGATGTTGCGCGGATCGAGAAATAGATTGGGGGAAATGGACGAATTGGTAGTAGATTTGCGGCCTACTGTAATCTTTAGGATAGGTGCTCTGCGGAGTGTTGCTTTTAAGATCTGAAAGTAATCTGGATCCGTGTGTAGAATGGGAGGTAACAATTTTTTTATCTCAGCTAGTAGTTAATTGCTGCCGAATGCAGCTATATGTGGAGCATGTTAATTAGTTTTGATTGGCATCGTGTATCATCCTTGGCATTTCCATATTAAAAGTAGACAACTGCAAT] [+] EMBL CA767316 [CAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGATGAAGGAGGCACAAGGACGGCGGCGGCGACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACCTCGGCCACGTCGGCGCCAAGACCTCCTGTACGTGTGCTGCTCTTCTTCTTCTTCTTCTCGCTGATCGTTACTGTGATTTTACCAATTTGATGTTGCGCGGATCGAGAAATAGATTGGGGGAAATGGACGAATTGGTAGTAGATTTGCGGCCTACTGTAATCTTTAGGATAGGTGCTCTGCGGAGTGTTGCTTTTAAGATCTGAAAGTAATCTGGATCCGTGTGTAGAATGGGAGGTAACAATTTTTTTATCTCAGCTAGTAGTTAATTGCTGCCGAATGCAGCTATATGTGGAGCATGTTAATTAGTTTTGATTGGCATCGTGTATCATCCTTGGCATTTCCATATTAAAAGTAGACAACTGCAAT] consensusID : consensus_14703#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [GTGCTGACACATGAACATCCTGTANGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAAGATGAACGTCNTTGTGATGCCCNCTACCNACATTATCTCGACCTGATGGGTTGTTGGTAGTGACCAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAGAATTTGGACTCCTAAGCCATCTGTGTTANATAGACGGATAAGTCCCTGNAAATNTGAGGCACAGACAGCNAGCTTCCCCAACCAAGAAAAGCGTGATACATGGTACTTTTAATAGCTCCCCAGTACCACCTGTGNTTGTTTGCGAAATTTGTGAGCCTGATGTTGATGGAATGTGCCACTATGTTCTGCTGCATTGATATGGGGACCATACATATTACNCCT] [+] EMBL BI805799 [GTGCTGACACATGAACATCCTGTANGGCGATCTCATCTGTGGTCAAGGCTCCATCGATAAGATGAACGTCNTTGTGATGCCCNCTACCNACATTATCTCGACCTGATGGGTTGTTGGTAGTGACCAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAGAATTTGGACTCCTAAGCCATCTGTGTTANATAGACGGATAAGTCCCTGNAAATNTGAGGCACAGACAGCNAGCTTCCCCAACCAAGAAAAGCGTGATACATGGTACTTTTAATAGCTCCCCAGTACCACCTGTGNTTGTTTGCGAAATTTGTGAGCCTGATGTTGATGGAATGTGCCACTATGTTCTGCTGCATTGATATGGGGACCATACATATTACNCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14703#1 ------------------------------------------------------------ consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 CCCACCACCGACACTCTCTCTTCTCCGCTCCTCCTCCGCCGATCACGCGCTCCGCATCCG 60 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ------------------------------------------------------------ consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 CATCGCCGGCGACGATGAGGACGTCGCGTGCGGCGGCGGCGGCGGCATCTCTGCCGCTGC 120 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ------------------------------------------------------------ consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 TGCTGCTGGTGGCGCTACTCGTGGCGGCGGAGGGGAGGAGGCACAAGGACGGCAGCGGCG 180 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ------------------------------------------------------------ consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 ACGAGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCCGGTTCTGCTGCA 240 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ------------------------------------------------------------ consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 ACGACACCATCACCGACTACTTCAAGGCGTACCAGTTCGAGGAGCTCTTCGCCCACCGCA 300 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ------------------------------------------------------------ consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 ACGACCGCTCGCTCGCCCACGCCGCCGGGTTCTGGGACTACCACGCCTTCATCACCGCCG 360 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ------------------------------------------------------------ consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 CCGCGCTCTTCGAGCCCCGCGGGTTCGGCACCACGGGAGGGAAGGAGGTTGGGATGAAGG 420 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ------------------------------------------------------------ consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 AGGTCGCCGCCTTCCTCGGCCACGTCGGCGCCAAGACCTCCTGTGGATATAGTGTCGCAA 480 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ------------------------------ACAACCATGAATTGAGCCCAAGCCAAAGCT 30 consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 CTGGTGGTCCATTGGCTTGGGGGCTTTGCTACAACCATGAATTGAGCCCAAGCCAAAGCT 540 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 ATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAG 90 consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 ATTGTGACAACAGCAACGAATTGTATCCTTGTGTTGAAGGAGTCGAGTATTATGGTCGAG 600 consensus_14703#2 -------CAGCGGGAGCCGGTTCTGCTGCAACGACACCATCACCGACTACTTCAAGGCGT 53 consensus_14703#1 GCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGG 150 consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 GCGCTCTTCCTGTTTACTGGAACTACAACTATGGTATTATCGGTCAGGGTATCAAACAGG 660 consensus_14703#2 ACCAGTTCGAGGAGCTCTTCGCCCACCGCAACGACCGC-TCGCTCGCCCACGCCGCCGGG 112 consensus_14703#1 ATCTGTTGAACCACCCAGAGTTATTGGAACAGAATGCGACCCTAGCATTTGAAGCAGCAA 210 consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 ATCTGTTGAACCACCCAGAGTTATTGGAACAGAATGCGACCCTAGCATTTGAAGCAGCAA 720 consensus_14703#2 TTCTG--GGACTACCACGCCTTCATCACCGCCGCCGCGCTCTTCGAGCCCCGCGGGTTCG 170 consensus_14703#1 TCTGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTG 270 consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 TCTGGAGGTGGATGACTCCAATGAAGAGGAAGCAACCATCAGCCCATGATGTATTCGTTG 780 consensus_14703#2 GCACCACGGGAGGGAAGGAGGTTGGGATGAAGGAGGCACAAG--GACGGCGGCGGCGACG 228 consensus_14703#1 GCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTA 330 consensus_14703#3 ---------------------------------------------------GTGCTGACA 9 consensus_14703#0 GCAACTGGAAACCAACCAAGAATGACACTTTGTCCAAGAGGTATCCTGGCTTTGGTGCTA 840 consensus_14703#2 AGGAGGCGAAGGCGTGCGACAAGGGGTGGGAGTGCAGCGGGAGCC--GGTTCTGCTGCAA 286 ** ** * consensus_14703#1 CAATG--AACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCC-ATCGATAAGATGA 387 consensus_14703#3 CA-TG--AACATCCTGTANGGCGATCTCATCTGTGGTCAAGGCTCC-ATCGATAAGATGA 65 consensus_14703#0 CAATG--AACATCCTGTATGGCGATCTCATCTGTGGTCAAGGCTCC-ATCGATAAGATGA 897 consensus_14703#2 CGACACCATCACCGACTACCTCGGCCACGTCGGCGCCAAGACCTCCTGTACGTGTGCTGC 346 * * ** * ** ** * * ** * * * **** * * * ** consensus_14703#1 ACGTCATTGTA--TCCCACTACCAACATTATCTCGACCTGATGGGT-GTTGGTAGTG-AC 443 consensus_14703#3 ACGTCNTTGTGATGCCCNCTACCNACATTATCTCGACCTGATGGGTTGTTGGTAGTG-AC 124 consensus_14703#0 ACGTCATTGTA--TCCCACTACCAACATTATCTCGACCTGATGGGT-GTTGGTAGTG-AC 953 consensus_14703#2 TCTTCTTCTTCTTCTTCTCGCTGATCGTTACTGTGATTTTACCAAT--TTGATGTTGCGC 404 * ** * * * * * *** ** * * * *** * ** * consensus_14703#1 AAAGTTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAAT 503 consensus_14703#3 CAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAA-GAAT 183 consensus_14703#0 AAAGCTGGAGATAACTTGGATTGTGCTGACCAGGTGGCGTTCAATCCATCCTCAAAGAAT 1013 consensus_14703#2 GGATCGAGAAATAGATTGGGGGAAATGGACGAATTGGTAGTAGATTTGCGGCCTA----- 459 * ** *** **** *** * *** * ** * * consensus_14703#1 TTGGACTCTTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACA 563 consensus_14703#3 TTGGACTCCTAAGCCATCTGTGTTANATAGACGGATAAGTCCCTGNAAATNTGAGGCACA 243 consensus_14703#0 TTGGACTCCTAAGCAATCTGTGTTATATAGACGGATAATTCCCTGTAAATTTGAGGCACA 1073 consensus_14703#2 CTGTAATCTTTAG-GATAGGTGCTCTGCGGAGTGTT--GCTTTTAAGATCTGAAAGTAAT 516 ** * ** * ** ** *** * ** * * * * * * * consensus_14703#1 GACAGCTAGCTTCCCAAACAAAGAAAAGCGT-ATACATGGTACTTTTAATAGCTCNCCAA 622 consensus_14703#3 GACAGCNAGCTTCCCCAACCAAGAAAAGCGTGATACATGGTACTTTTAATAGCTCCCCA- 302 consensus_14703#0 GACAGCTAGCTTCCCAAACAAAGAAAAGCGT-ATACATGGTACTTTTAATAGCTCCCAA- 1131 consensus_14703#2 CTGGATCCGTGTGTAGAATGGGAGGTAACAATTTTTTTATCTCAGCTAGTAGTTAATTG- 575 * * ** * * * * * ** *** * consensus_14703#1 GTACCACCTGTGTTTGTTTGCGAAATTGGT-AGCCT---ATTTATGTAAGTGTCCAATAT 678 consensus_14703#3 GTACCACCTGTGNTTGTTTGCGAAATTTGTGAGCCTGATGTTGATGGAATGTGCCACTAT 362 consensus_14703#0 GTACCACCTGTGTTTGTTTGCGAAATTTGT-AGCCT---ATTTATGTAAGTGTCCACTAT 1187 consensus_14703#2 CTGCCGAATGCAGCTATATGTGGAGCATGTTAATTA---GTTTTGATTGGCATCGTGTAT 632 * ** ** * * ** * * ** * ** * *** consensus_14703#1 GTTCTCT--CATTTATATGTG-ACAATACATAGTACACACTGAAGCAGATAATTCCCATT 735 consensus_14703#3 GTTCTGCTGCATTGATATGGGGACCATACATATTACNCCT-------------------- 402 consensus_14703#0 GTTCTCT--CATTTATATGTG-ACAATACATATTACACACTGAAGCAGATAATTCACATT 1244 consensus_14703#2 CATCCTTGGCATTTCCATATTAAAAGTAGACAACTGCAAT-------------------- 672 ** **** ** * ** * * consensus_14703#1 CAAACAAAAAAAGGGA-------------------------------------------- 751 consensus_14703#3 ------------------------------------------------------------ consensus_14703#0 CAAACATGCAATGACTGTTGTAAATAAGCATATAATTTCATTGCAGTTTGCTTAGAAAAA 1304 consensus_14703#2 ------------------------------------------------------------ consensus_14703#1 -------- consensus_14703#3 -------- consensus_14703#0 AAAAAAAA 1312 consensus_14703#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||