cluster # 1471

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Oryza sativa
cluster # 1471 cluster # 1471 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1471#0 length = 188 sequences # 1

consensus_1471#1 length = 187 sequences # 1

consensusID : consensus_1471#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [GGCGGCGGCGGCGATCGTCGGAGAGAAAACCGGTGGCTTTCTCGTTCTTGATTTTCTTTTTCTCTCAATTTCTCTCCTTTTCTTCTCCTCCTCCTCCTCCTCCCAATTTTGGAGTCAAAAATTGTGAGAAATCATATCTGTCCCCATCTGTAAATGTCAACTCTTCCATGCATGATTCCCCGCAAAAA]

[+] EMBL AU222801             [GGCGGCGGCGGCGATCGTCGGAGAGAAAACCGGTGGCTTTCTCGTTCTTGATTTTCTTTTTCTCTCAATTTCTCTCCTTTTCTTCTCCTCCTCCTCCTCCTCCCAATTTTGGAGTCAAAAATTGTGAGAAATCATATCTGTCCCCATCTGTAAATGTCAACTCTTCCATGCATGATTCCCCGCAAAAA]




>consensus_1471#0
GGCGGCGGCGGCGATCGTCGGAGAGAAAACCGGTGGCTTTCTCGTTCTTGATTTTCTTTT
TCTCTCAATTTCTCTCCTTTTCTTCTCCTCCTCCTCCTCCTCCCAATTTTGGAGTCAAAA
ATTGTGAGAAATCATATCTGTCCCCATCTGTAAATGTCAACTCTTCCATGCATGATTCCC
CGCAAAAA

consensusID : consensus_1471#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence

                              [GGCGNNGGNGNGGATCNTCGGAGAGAAAACCGATGGCTTTCTCGGTCTTNGTTTNCTTATTCTCNCAATTTCTGTCCTTTTCNTCTCCTCCTCCTCCNGCTGCCAATTTTGGNGTCAAAAATTGTGAGAAATCATATCTGTCCCNATCTGTAAATGTCAACTCTTCCATGCATNATTCCCNGTAANA]

[+] EMBL OSS1052A             [GGCGNNGGNGNGGATCNTCGGAGAGAAAACCGATGGCTTTCTCGGTCTTNGTTTNCTTATTCTCNCAATTTCTGTCCTTTTCNTCTCCTCCTCCTCCNGCTGCCAATTTTGGNGTCAAAAATTGTGAGAAATCATATCTGTCCCNATCTGTAAATGTCAACTCTTCCATGCATNATTCCCNGTAANA]




>consensus_1471#1
GGCGNNGGNGNGGATCNTCGGAGAGAAAACCGATGGCTTTCTCGGTCTTNGTTTNCTTAT
TCTCNCAATTTCTGTCCTTTTCNTCTCCTCCTCCTCCNGCTGCCAATTTTGGNGTCAAAA
ATTGTGAGAAATCATATCTGTCCCNATCTGTAAATGTCAACTCTTCCATGCATNATTCCC
NGTAANA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1471#0      GGCGGCGGCGGCGATCGTCGGAGAGAAAACCGGTGGCTTTCTCGTTCTTGATTTTCTTTT 60
consensus_1471#1      GGCGNNGGNGNGGATCNTCGGAGAGAAAACCGATGGCTTTCTCGGTCTTNGTTTNCTTAT 60
                      ****  ** *  **** *************** *********** ****  *** *** *

consensus_1471#0      TCTCTCAATTTCTCTCCTTTTCTTCTCCTCCTCCTCCTCCTCCCAATTTTGGAGTCAAAA 120
consensus_1471#1      TCTCNCAATTTCTGTCCTTTTCNTCTCCTCCTCCTCCNGCTGCCAATTTTGGNGTCAAAA 120
                      **** ******** ******** **************  ** ********** *******

consensus_1471#0      ATTGTGAGAAATCATATCTGTCCCCATCTGTAAATGTCAACTCTTCCATGCATGATTCCC 180
consensus_1471#1      ATTGTGAGAAATCATATCTGTCCCNATCTGTAAATGTCAACTCTTCCATGCATNATTCCC 180
                      ************************ **************************** ******

consensus_1471#0      CGCAAAAA 188
consensus_1471#1      NGTAANA- 187
                       * ** *