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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1652 fasta sequence
[TAGAAACAGTCTCTCGGCTTCTAGACTAGGGAAGCTCACCAACCCAAGAACAAGAAGTGATCGGAGATGGCTCCCAAGAAGGTGCTCCTGCTCTGCGGAGACTACATGGAGGACTACGAGGCCATGGTTCCGTTCCAAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCCGGCAAGAAGGCCGGCGACTCGTGCCGCACCGC-CGTCCATCA-GGGGATTGGCCACCAGACATATGCTGAGTCAAGGGGCCACAATTTCGCACTTAATGCTTCGTTTGATGAGGTTAATATCAATGAATATGATGGCTTGGTAATTCCTGGAGGCCGTGCACCAGAGTATCTCGCCATGGATGAAAAGGTTCTTGATTTAGTAAGGAAATTCTCTGATGCGAAGAAACCTATTGCATCAGTTTGCCATGGACAGTTGATTTTGGCAGCAGCTGGAGTAGTCCAGAACCGTAAATGCACCGCATATCCTGCTGTTAAACCAGTT-TTGGTTGCTGCTGGTGCTAAGTGGGAAGAAGCTGATACTATGGACAAATGCACAGTTGATGGAAATCTTGTCACTGCAGTGGCTTACGATGCACATCCTGAATTCATCAGCCTTTTTGTGAAAGCGCTTGGAGGCTCTGTAACTGGCTCAAACAAACGGATATTGTTCCTTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAATGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCACGATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTAATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAAACAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGGTTCCCCTTTCCTTTAAAAGGGGGAAATTCGGGGCCCTAAAAAAAAATCCCCCCTTAGGGGGGGGGTTTTAAAATTACGGGGGCGGGTTTTAAAAAACGGGGAGGGGGAAAAACCCGGGGGTTCCCCAATTTAAAGCTTTTGGAAAAAAACCCCTTTTTCCCCGGGGGGGAAAAAAAAAAAAGGC]
[+] EMBL CF281161 [TAGAAACAGTCTCTCGGCTTCTAGACTAGGGAAGCTCACCAACCCAAGAACAAGAAGTGATCGGAGATGGCTCCCAAGAAGGTGCTCCTGCTCTGCGGAGACTACATGGAGGACTACGAGGCCATGGTTCCGTTCCAAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCCGGCAAGAAAGCCGGCGACTCGTGCCGCACCGC CGTCCATCAGGGGGATTGGCCACCAGACATATGCTGAGTCAAGGGGCCACAATTTCGCACTTAATGCTTCGTTTGATGAGGTTAATATCAATGAATA ]
[+] EMBL CF280548 [ CGGCTTCTAGACTAGGGAAGCTCACCAACCCAAGAACAAGAAGTGATCGGAGATGGCTCCCAAGAAGGTGCTCCTGCTCTGCGGAGACTACATGGAGGACTACGAGGCCATGGTTCCGTTCCAAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCCGGCAAGAAGGCCGGCGACTCGTGCCGCACCGC CGTCCATCA GGGGATTGGCCACCAGACATATGCTGAGTCAAGGGGCCACAATTTCGCACTTAATGCTTCGTTTGATGAGGTTAATATCAATGAATATGATGGCTTGGTAATTCCTGGAGGCCGTGCACCAGAGTATCTCGCCATGGATGAAAAGGTTCTTGATTTAGTAAGGAAATTCTCTGATGCGAAGAAACCTATTGCATCAGTTTGCCATGGACAGTTGATTTTGGCAGCAGCTGGAGTAGTCCAGAACCGTAAATGCACCGCATATCCTGCTGTTAAACCAGTTNTTGGTTGCTGCTGGTGCTAAGTGGGAAGAAGCTGATACTATGGACAAATGCACAGTTGATGGAAATCTTGTCACTGCAGTGGCTTACGATGCACATCCTGAATTCACCA CCTTTTTGTGAAAGCGCTTGGAGGCTCTG ]
[+] EMBL AK100753 [ GGCTTCTAGACTAGGGAAGCTCACCAACCCAAGAACAAGAAGTGATCGGAGATGGCTCCCAAGAAGGTGCTCCTGCTCTGCGGAGACTACATGGAGGACTACGAGGCCATGGTTCCGTTCCAAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCCGGCAAGAAGGCCGGCGACTCGTGCCGCACCGC CGTCCATCA GGGGATTGGCCACCAGACATATGCTGAGTCAAGGGGCCACAATTTCGCACTTAATGCTTCGTTTGATGAGGTTAATATCAATGAATATGATGGCTTGGTAATTCCTGGAGGCCGTGCACCAGAGTATCTCGCCATGGATGAAAAGGTTCTTGATTTAGTAAGGAAATTCTCTGATGCGAAGAAACCTATTGCATCAGTTTGCCATGGACAGTTGATTTTGGCAGCAGCTGGAGTAGTCCAGAACCGTAAATGCACCGCATATCCTGCTGTTAAACCAGTT TTGGTTGCTGCTGGTGCTAAGTGGGAAGAAGCTGATACTATGGACAAATGCACAGTTGATGGAAATCTTGTCACTGCAGTGGCTTACGATGCACATCCTGAATTCATCAGCCTTTTTGTGAAAGCGCTTGGAGGCTCTGTAACTGGCTCAAACAAACGGATATTGTTCCTTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAATGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCACGATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTAATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAA ]
[+] EMBL CF319981 [ GGCTTCTAGACTAGGGAAGCTCACCAACCCAAGAACAAGAAGTGATCGGAGATGGCTCCCAAGAAGGTGCTCCTTCTCTGCGGAGACTACATGGAGGACTACGAGGCCATGGTTCCGTTCCAAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCCGGCAAGAAGGCCGGCGACTCGTGCCGCACCGC CGTCCATCA GGGGATTGGCCACCAGACATATGCTGAGTCAAGGGGCCACAATTTCGCACTTAATGCTTCGTTTGATGAGGTTAATATCAATGAATATGATGGCTTGGTAATTCCTGGAGGCCGTGCACCAGAGTATCTCGCCATGGATGAAAAGGTTCTTGATTTAGTAAGGAAATTCTCTGATGCGAAGAAACCTATTGCATCAGTTTGCCATGGACAGTTGATTTTGGCAGCAGCTGGAGTAGTCCAGAACCGTAAATGCACCG ]
[+] EMBL CB647339 [ ACCAACCCCATAACAAGAAGTGATCGGAGATGGCTCCCAAGAAGGTGCTCCTGCTCTGCGGAGACTACATGGAGGACTACGAGGCCATGGTTCCGTTCCAAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCCGGCAAGAAGGCCGGCGACTCGTGCCGCACCGC CGTCCATCA GGGGATTGGCCACCAGACATATGCTGAGTCAAGGGGCCACAATTTCGCACTTAATGCTTCGTTTGATGAGGTTAATATCAATGAATATGATGGCTTGGTAATTCCTGGAGGCCGTGCACCAGAGTATCTCGCCATGGATGAAAAGGTTCTTGATTTAGTAAGGAAATTCTCTGATGCGAAGAAACCTATTGCATCAGTTTGCCATGGACAGTTGATTTTGGCAGCAGCTGGAGTAGTCCAGAACCGTAAATGCACCGCATATCCTGCTGTTAAACCAGTT TTGGTTGCTGCTGGTGCTAAGTGGGAAGAAGCTGATACTATGGACAAATGCACAGTTGATGGAAATCTTGTCACTGCAGTGGCTTACGATGCACATCCTGAATTCATCAGCCTTTTTGTGAAAGCGCTTGGAGGCTCTGTAACTGGCTCAAACAAACGGATATTGTTCCTTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAATGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAACCTGGTC ]
[+] EMBL CB653414 [ ACCCACCTTAGAACAAGAAGTGATCGGAGATGGCTCCCAAGAAGGTGCTCCTGCTCTGCGGAGACTACATGGAGGACTACGAGGCCATGGTTCCGTTCCAAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCCGGCAAGAAGGCCGGCGACTCGTGCCGCACCGCTCGTCCATCA CGGGATTGGCCACCACACATATGCTGAGTCAAGGGGCCACAATTTCGCACTTAATGCTTCGTTTGATGACGTTAATATCAATGAATATGATGGCTTGGTAATTCCTGGAGGCCGTGCACCATATTATCTCGCCATGGATGAAAAGGTTCTTGATTTACTAAGGAAATTCTCTGATGCGAAGAAACCTATTGCATCAGTTTGCCATGGACAGTTGATTTTGGCAGCAGCTGGAGTAGTCCAGAACCGTAAATGCACCGCATATCCTGCTGTTAAACCAGTT TTGGTTGCTGCTGGTGCTAAGTGGGAAGAAGCTGATACTATGGACAAATGCACAGCTGATGGAAATCTTGTCACTGCAGTGGCTTACGATGCACATCCTGAATTCATCAGCCTTTTTGTGAAAGCGCTTGGAGGCTCTGTAACTGGCTCTAACAAACGGATATTGTTCCTTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAACCCTTGGTTG ]
[+] EMBL CB647341 [ ACCAGCCCAATAACAAGAAGTGATCGGAGATGGCTCCCAAGAAGGTGCTCCTGCTCTGCGGACACTACATGGAGGACTACGACGCCATGGGTCCGTTCCCAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCCAGCAAGAAGGCCGGCGACTCGTGCCGCACCGC CGTCCATCA GGGGATTGGCCACCAGACATATGCTGAATCAAGGGGCCACAATTTCCCACTTAATGCTTCGTTTGATGAGGTTAATATCAATGAATATGATGGCTTGGTAATTCCTGGAGGCCGTGCACCAGAGTATCTCGCCATGGATGAAAAGGTTCTTGATTTAGTAAGGAAATTCTCTGATGCGAAGAAACCTATTGCATCAGTTTGCCATGGACAGTTGATTTTGGCAGCAGCTGGAGTAGTCCAGAACCGTAAATGCACCGCATATCCTGCTGTTAAACCAGTT TTGGTTGCTGCTGGTGCTAAGTGGGAAGAAGCTGATACTATGGACAAATGCACAGTTGATGGAAATCTTGTCACTGCAGTGGCTTACGATGCACATCCTGAATTCATCAGCCTTTTTGTGAAAGCGCTTGGAGGCTCTGTAACTGGCTCAAACAAACGGATATTGTTCCTTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAATGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCACGATTTTGCTTTGACA ]
[-] EMBL CB653415 [ TTTTTGTGAAAGCGCTTGGAGGCTCTGTAACTGGCTCAAACAAACGGATATTGTTCCTTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAATGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCACGATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTAATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTAGGTGTGCTTGAAATAATAAGATAATTCCTAAAAAACAAAAAAGGA ]
[-] EMBL CB653416 [ GCGCTTGGAGGCTCTGTAACTGGCTCAAACAAACGGATATTGTTCCTTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAATGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCACGATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTAATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAG ]
[-] EMBL CF319982 [ TTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTAATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAAA ]
[+] EMBL CF332283 [ ggactgaaGGAGTAGAAATCCCAGCTCTTTGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGGTTCCCCTTTCCTTTAAAAGGGGGAAATTCGGGGCCCTAAAAAAAAATCCCCCCTTAGGGGGGGGGTTTTAAAATTACGGGGGCGGGTTTTAAAAAACGGGGAGGGGGAAAAACCCGGGGGTTCCCCAATTTAAAGCTTTTGGAAAAAAACCCCTTTTTCCCCGGGGGGGAAAAAAAAAAAAGGC]
consensusID : consensus_14710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence
[CCCTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAATGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCACGATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTAATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAGGGTTTGCGTGTTGATAGTATTATGTCTGTACGAGCAGAAGGAGCTG]
[-] EMBL CB647340 [CCCTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCTCTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAATGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCACGATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTAATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAGGGTTTGCGTGTTGATAGTATTATGTCTGTACGAGCAGAAGGAGCTG]
[-] EMBL CF280549 [ TCATCTCCCAGCTCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAGGGTTTGCGTGTTtaaaa ]
consensusID : consensus_14710#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[GCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTAGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGACTGTACTATGCACACCTGATAGACTGTCGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAAAAAAAAAAAANAAA]
[+] EMBL BE040332 [GCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCATGGCATTGCTAGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGACTGTACTATGCACACCTGATAGACTGTCGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAAAAAAAAAAAANAAA]
consensusID : consensus_14710#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[TTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCAAAGAAAAGATTGGCATCAAGGTCTCCTTTTGAAGCAACGAGAGGTCAAAAAACAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTTTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAGGGTTTGCGTGTTTAAAAAAAAAA]
[-] EMBL CF281162 [TTGTGAAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTATCTGCTGCTGGAGTCCTTCAGGGAAGGAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTGCTTGGCGGGGCGACATGGCTGGAGCCCAATCCCATTGACCGCTGCTTCACCGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGCTCAAAGAAAAGATTGGCATCAAGGTCTCCTTTTGAAGCAACGAGAGGTCAAAAAACAGCGTTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTTTAAGATATATACAGTCTTACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAGGGTTTGCGTGTTTAAAAAAAAAA]
consensusID : consensus_14710#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence
[AGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGACTGTACTATGCACACCTGATAGACTGTCGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAGGGTTTGCGTGTTTATAGTATTATGTCTGTACGAGCAGAAGGAGCTGCAAAAAAAAAA]
[+] EMBL BI811767 [AGCTTTGGGCTTTCGTCTAAGATATATACAGTCTTACCGATACTGTACCAGACTGTACTATGCACACCTGATAGACTGTCGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTAAAAGGGTTTGCGTGTTTATAGTATTATGTCTGTACGAGCAGAAGGAGCTGCAAAAAAAAAA]
consensusID : consensus_14710#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence
[TTNCCATTGACCCCAACAGATTTTATCTGCTGCTGAGTCCATCAGGGAAGGTAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTCTTGGCAGGCNACATGGCTGGAGCACCAATCCCATGTGACCAGCTGCTTCACGCGACGGCAACCTTGTGACC]
[+] EMBL BI806242 [TTNCCATTGACCCCAACAGATTTTATCTGCTGCTGAGTCCATCAGGGAAGGTAAATGCACGGCGTATCCTGCGGTGAAGCTGAACGTGGTCTTGGCAGGCNACATGGCTGGAGCACCAATCCCATGTGACCAGCTGCTTCACGCGACGGCAACCTTGTGACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14710#0 TAGAAACAGTCTCTCGGCTTCTAGACTAGGGAAGCTCACCAACCCAAGAACAAGAAGTGA 60
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TCGGAGATGGCTCCCAAGAAGGTGCTCCTGCTCTGCGGAGACTACATGGAGGACTACGAG 120
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 GCCATGGTTCCGTTCCAAGCGCTGCAAGCGTACGGGGTGTCCGTGGATGCTGCCTGCCCC 180
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 GGCAAGAAGGCCGGCGACTCGTGCCGCACCGCCGTCCATCAGGGGATTGGCCACCAGACA 240
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TATGCTGAGTCAAGGGGCCACAATTTCGCACTTAATGCTTCGTTTGATGAGGTTAATATC 300
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 AATGAATATGATGGCTTGGTAATTCCTGGAGGCCGTGCACCAGAGTATCTCGCCATGGAT 360
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 GAAAAGGTTCTTGATTTAGTAAGGAAATTCTCTGATGCGAAGAAACCTATTGCATCAGTT 420
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TGCCATGGACAGTTGATTTTGGCAGCAGCTGGAGTAGTCCAGAACCGTAAATGCACCGCA 480
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TATCCTGCTGTTAAACCAGTTTTGGTTGCTGCTGGTGCTAAGTGGGAAGAAGCTGATACT 540
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 ATGGACAAATGCACAGTTGATGGAAATCTTGTCACTGCAGTGGCTTACGATGCACATCCT 600
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 GAATTCATCAGCCTTTTTGTGAAAGCGCTTGGAGGCTCTGTAACTGGCTCAAACAAACGG 660
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 ATATTGTTCCTTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCT 720
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 --------CCCTTGTGGGGATTACATGGAAGATTATGAGGTTATGGTACCATTTCAGTCT 52
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 CTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAA 780
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 CTTCAAGCCCTTGGTTGCCATGTTGATGCAGTTTGCCCTGACAAGGGTGCTGGGGAGAAA 112
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCAC 840
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 TGCCCAACTGCCATACATGACTTTGAAGGTGACCAAACATACAGCGAGAAGCCTGGTCAC 172
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 GATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTA 900
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 GATTTTGCTTTGACAGCATCATTTGACAATGTGGATGCATCAAGCTATGATGCACTTGTA 232
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 ATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTG 960
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 -------------------------------------------------------TTGTG 5
consensus_14710#2 ---------------GCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTG 45
consensus_14710#1 ATTCCTGGTGGACGGGCTCCTGAGTACCTTGCACTGAACGATAAAGTCATTAGCCTTGTG 292
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 AAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTA 1020
consensus_14710#5 -------------------------------TTNCCATTGACC----CCAACAGATTTTA 25
consensus_14710#3 AAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTA 65
consensus_14710#2 AAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTA 105
consensus_14710#1 AAGGGCTTCATGGATAAAGCAAAGCCAGTCGCCTCAATTTGCCATGGCCAACAGATTTTA 352
consensus_14710#4 -----------------------------AGCTTTGGGCTTTCGT--CTAAGATATATAC 29
* * ** * ** *
consensus_14710#0 TCTGCTGCTGGAGTCCTTCAGGGAAGG-AAATGCACGGCGTATCCTGCGGTGAAGCTGAA 1079
consensus_14710#5 TCTGCTGCTG-AGTCCATCAGGGAAGGTAAATGCACGGCGTATCCTGCGGTGAAGCTGAA 84
consensus_14710#3 TCTGCTGCTGGAGTCCTTCAGGGAAGG-AAATGCACGGCGTATCCTGCGGTGAAGCTGAA 124
consensus_14710#2 TCTGCTGCTGGAGTCCTTCAGGGAAGG-AAATGCACGGCGTATCCTGCGGTGAAGCTGAA 164
consensus_14710#1 TCTGCTGCTGGAGTCCTTCAGGGAAGG-AAATGCACGGCGTATCCTGCGGTGAAGCTGAA 411
consensus_14710#4 AGTCTTACCGATACTGTACCAGACTGTACTATGCACACCTGAT---AGACTGTCGTCTGC 86
* * * * * * * ****** * ** ** *
consensus_14710#0 CGTGGTGCTTGGCGGGGCGACATGGCTGGAGC-CCAATCCCAT-TGACC-GCTGCTTCAC 1136
consensus_14710#5 CGTGGT-CTTGGCAGG-CNACATGGCTGGAGCACCAATCCCATGTGACCAGCTGCTTCAC 142
consensus_14710#3 CGTGGTGCTTGGCGGGGCGACATGGCTGGAGC-CCAATCCCAT-TGACC-GCTGCTTCAC 181
consensus_14710#2 CGTGGTGCTTGGCGGGGCGACATGGCTGGAGC-CCAATCCCAT-TGACC-GCTGCTTCAC 221
consensus_14710#1 CGTGGTGCTTGGCGGGGCGACATGGCTGGAGC-CCAATCCCAT-TGACC-GCTGCTTCAC 468
consensus_14710#4 TGTCGTTTTTTGTGCT-TGAAATAATAAGATAATTACTAAAAG--GGTTTGCGTGTTTAT 143
** ** ** * * ** ** * * * * ** ** *
consensus_14710#0 -CGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGC 1195
consensus_14710#5 GCGACGGCAACCTTGTGACC---------------------------------------- 162
consensus_14710#3 -CGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGC 240
consensus_14710#2 -CGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGC 280
consensus_14710#1 -CGACGGCAACCTTGTGACCGGCGCGGCATGGCCTGGCCACCCGGAGTTCATCTCCCAGC 527
consensus_14710#4 AGTATTATGTCTGTACGAGCAGAAGGAGCTGCAAAAAAAAAA------------------ 185
* * * ** *
consensus_14710#0 TCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCG 1255
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 TCAAAGAAAAGATTGGCATCAAGGTCTCCTTTTGAAGCAACGAGAGGTCAAAAAACAGCG 300
consensus_14710#2 TCATGGCATTGCTAGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCG 340
consensus_14710#1 TCATGGCATTGCTTGGCATCAAGGTCTCCTTCTGAAGCAACGAGAGGTCAGGTCCCAGCG 587
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCT 1315
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 TTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTTTAAGATATATACAGTCT 360
consensus_14710#2 TTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCT 400
consensus_14710#1 TTTTTGCACGCGATATAGCAAGACACAGCTTTGGGCTTTCGTCTAAGATATATACAGTCT 647
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTA 1375
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 TACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTA 420
consensus_14710#2 TACCGATACTGTACCAGACTGTACTATGCACACCTGATAGACTGTCGTCTGCTGTCGTTT 460
consensus_14710#1 TACCGATACTGTACCAGTCTGCTGTCGTTTTTTGTGCTTGAAATAATAAGATAATTACTA 707
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 AAAAACAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1435
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 AAAGGGTTTGCGTGTTTAAAAAAAAAA--------------------------------- 447
consensus_14710#2 TTTGTGCTTGAAATAATAAGATAATTACTAAAAAAAAAAAAAAANAAA------------ 508
consensus_14710#1 AAAGGGTTTGCGTGTTGATAGTATTATGTCTGTACGAGCAGAAGGAGCTG---------- 757
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 AAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGGTTCCCCTTTCCTTTAAAAGGGGGAAAT 1495
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TCGGGGCCCTAAAAAAAAATCCCCCCTTAGGGGGGGGGTTTTAAAATTACGGGGGCGGGT 1555
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 TTTAAAAAACGGGGAGGGGGAAAAACCCGGGGGTTCCCCAATTTAAAGCTTTTGGAAAAA 1615
consensus_14710#5 ------------------------------------------------------------
consensus_14710#3 ------------------------------------------------------------
consensus_14710#2 ------------------------------------------------------------
consensus_14710#1 ------------------------------------------------------------
consensus_14710#4 ------------------------------------------------------------
consensus_14710#0 AACCCCTTTTTCCCCGGGGGGGAAAAAAAAAAAAGGC 1652
consensus_14710#5 -------------------------------------
consensus_14710#3 -------------------------------------
consensus_14710#2 -------------------------------------
consensus_14710#1 -------------------------------------
consensus_14710#4 -------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||