These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1423 fasta sequence [GCTCGTGGCCTCCTCCGCCGTCCACGTGAGGCAGGCAGGGCTAACTCCGCCGCGGGGCCCACGGAGCAGTGGGTGGGTGGGGCCCGCGGCCCGCACCGTCCCTCGGATCGCGCGGGGCCCACCTGGGGGGCAATTCCGTCTCCTTCCTCCCTCTCGCTTACGAACTCCGCTACCAACCGCTTCCTTTTCCTTCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTAGACAGCGAAGCCGGCGAACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGT-GG-ACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC-TTCCTTGCTATTCATATTCCTAG-TTGGAATATTTG-TTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA-CATATATTCTG-CAT-CGAAGCAAGTTAGCACTGCTG-TTTCACCAGAT-CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT-CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG-CAGTGTATATGTGC-CA-ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG-AATTT-GTCCATTCGAGAAGGGATAGAAAT-CATTGTTTCTGGAGGAATGACCAT-GCCGCAGGTGATTG-CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC---------AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA-AAGCTGGAA-CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCA-AATGTATATCAGTACTGTGACCAATAGTATTTATACTCCTTTCAAAAGAAAAAAAAA-CGATAGCATTTGTACCTTGTTTAAAAAAAA] [+] EMBL AK121867 [GCTCGTGGCCTCCTCCGCCGTCCACGTGAGGCAGGCAGGGCTAACTCCGCCGCGGGGCCCACGGAGCAGTGGGTGGGTGGGGCCCGCGGCCCGCACCGTCCCTCGGATCGCGCGGGGCCCACCTGGGGGGCAATTCCGTCTCCTTCCTCCCTCTCGCTTACGAACTCCGCTACCAACCGCTTCCTTTTCCTTCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTAGACAGCGAAGCCGGCGAACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGT GG ACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGATAGAAAT CATTGTTTCTGGAGGAATGACCAT GCCGCAGGTGATTG CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCA AATGTATATCAGTACTGTGACCAATAGTATTTATACTCCTTTCAAAAGAAAAAAAAA CGATAGCATTTG ] [+] EMBL AK059283 [ TTCCTTTTCCTTCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTAGACAGCGAAGCCGGCGAACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGT GG ACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGATAGAAAT CATTGTTTCTGGAGGAATGACCAT GCCGCAGGTGATTG CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATCAGCTTTTGTAGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCA AATGTATATCAGTACTGTGACCAATAGTATTTATACTCCTTTCAAAAGAAAAAAAAA CGATAGCATTTG ] [+] EMBL CB626900 [ gtcCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTAGACAGCGAAGCCGGCGAACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGT GG ACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTCTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGAC ] [+] EMBL CB626940 [ TGCTGCTGCTGCTGCTGGTGGCGGTAGACAGCGAAGCCGGCGAACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGT GG ACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTCTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATT ] [+] EMBL C97538 [ CGAACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGG GGTNGG ACCCCGANGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCNCCGGCGAACTCCACCCGCAAGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTNGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAGTTTGGAATATTTGTTTTCTTCATGGGTGGGNTCAACTGTCTTTGGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTGTTTTCACCAGAT CAAAATACAACGGNATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATT GTGAATATGCATTTGGATTCANAACATCGATGATGATCCTTNAGACTGACAAAGGTGATt ] [+] EMBL AU183277 [ AACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGT GG ACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCAT ] [+] EMBL OSC452 [ gnanACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGA GAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGA C GT GGNACCCCGAGGACCCGGTCAAGTCGCCGCCG GGCCCACCTCGCCGGCGAACTCCACCCGCAA GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTT ] [+] EMBL CB653923 [ CTCGGTCCCTTTGGCATCCTCATCCTCCAGGTCCACGGCCACTAGCTACCATCTAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCGCAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGT GG ACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATA ] [+] EMBL CF323560 [ TTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAGTTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGCNCA ACCAATCATCTATATATCGGTGACATCTTCTTGG ] [-] EMBL CB626941 [ CCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATGGATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGG TTTTGACTTTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTCTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGATAGAAAT CATTGTTTCTGGAGGAATGACCAT GCCGCAGGTGATTG CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCA AATGTATATCAGTACTGTGACCAATAGTATTTATACTCCTTTCAAAAGAAAAAAAAATCGATAGCATTTGTACCTTG ] [-] EMBL CB653924 [ CTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGATAGAAAT CATTGTTTCTGGAGGAATGACCAT GCCGCAGGTGATTG CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATCAGCTTTTGTAGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCA AATGTATATCAGTACAGTGCCCAATAGT TTTAaggtcc ] [-] EMBL CB626901 [ TTGGATTTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTCTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGATAGAAAT CATTGTTTCTGGAGGAATGACCAT GCCGCAGGTGATTG CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCA AATGTATATCAGTACTGTGACCAATAGTATTTATACTCCTTTCAAAAGAAAAAAAAATCGATAGCATTTG ] [+] EMBL CA999153 [ TTGATATATTTGGCCTTGGGTTTTTGAC TTCCTTGCTATTCATATTCCTAG TTGGAATATTTG TTTCTTCATGGGTGGGTTCAACTGTCTTTTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCA CATATATTCTG CAT CGAAGCAAGTTAGCACTGCTG TTTCACCAGAT CAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGT CATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGATAGAAAT CATTGTTTCTGGAGGAATGACCAT GCCGCATGTGATTG CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAcg ] [+] EMBL C99208 [ GGCACCTTNTATTCTGCCATCCGAAGCANGTTAGCACTGCTG TTTCACCAGATCCAAAATACAACGGCATTTAAAGAAGTTGCAATAATTAGTCCATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTGCCAGTGTATATGTGC CA ACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGATAGAAATCCATTGTTTCTGGAGGAATGACCAT GCCGCAGGTGATTGCCAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCA AATGTATATCAGTACTGTGACCAATAGTATTTATACTCCTTTCAAAA ] [-] EMBL BU667279 [ ACTGCTG TTTCACCAGAT C AAATAC ACGGCATTTAAAGAAGTTGC ATAATTAGT CATCCCCGTATTGGTGAATATGCATTGGGATTCATAACATCGACGATGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTG CAGTGTATATGTGC CA ACC ATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGATAGAAAT CATTGTTTCTGGAGGAATGACCAT GCCGCAGGTGATTG CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAACCAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATC AAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCACAATGTATATCAGTACTGTGACC ATAGTATTTATACTCCTTTCAAAAGAAAAAAAA ] [+] EMBL C97539 [ GTGTATATGTGC CA ACC ATCATCTATATATCGGTGNCATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCG AATTT GTCCATTCGAGAAGGGNTAGAAAT CATTGTTTCTGGAGG ATGACCAT GCCGCAGGTGATTG CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACA AAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTAGGCAGATCAAAATACGAAAGTCAGTGTTGACTAGTCCGCATNGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTATCAATCACGCNCCA AATGTATATCAGTACTGTGACCAATAGNATTTATACTCCTNTCAAAAGAAAAAAAAA CGATAGCATTTGTACCTTGTTTAAAAAAA ] [+] EMBL BI807498 [ ATGTCC CACACCCATCATCTATATATCGGTGACATCTTCTTGGTTAGTTCTGAGGAGATTATAA GCCGAAATTTGGTCCATTCGAGAAGGGATAG AAT CATTGTTTCTGGAGGAATGACCATGGCCGCAGGTGATTG CAGCACCAGGACCAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTGCGTGAGTACATC AGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACACAAGCTGGAA CAAGGTGATTGAGAAGCAGCATTGCTGGTAGATTA GCAGATC AAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCA AATGTATATCAGTACTGTGACC ATAGTATTTATACTCCTTTC AAAGAAAAAAAAATCGATAGCATTTGTACCTTGTTTAAAAAAAA] consensusID : consensus_14728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [ACCAAAGGGGTTGATTGAGAAGCAGCACTTGCTGGTAGATTAGGCAGATCCAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCAATGTATATCAGTACTGTGACCATAGTATTTATACTCCTTTCAAAGAAAAAANAATCGATAGCATTTGTACCTTGTTTAAAAA] [+] EMBL BM420658 [ACCAAAGGGGTTGATTGAGAAGCAGCACTTGCTGGTAGATTAGGCAGATCCAAATACGAAAGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAATCTTTCAATCACGCTCCAATGTATATCAGTACTGTGACCATAGTATTTATACTCCTTTCAAAGAAAAAANAATCGATAGCATTTGTACCTTGTTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14728#0 GCTCGTGGCCTCCTCCGCCGTCCACGTGAGGCAGGCAGGGCTAACTCCGCCGCGGGGCCC 60 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 ACGGAGCAGTGGGTGGGTGGGGCCCGCGGCCCGCACCGTCCCTCGGATCGCGCGGGGCCC 120 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 ACCTGGGGGGCAATTCCGTCTCCTTCCTCCCTCTCGCTTACGAACTCCGCTACCAACCGC 180 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 TTCCTTTTCCTTCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTAGACAGCGAAGCCGGC 240 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 GAACCACCTCGGTTTCGTTGGCATCGTCATCCTCCAGGTCCACGGCCACTAGCTACCATC 300 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 TAGAAGCTTCCGGAAGCTTCGGGAAGGAAGCCGCCCCCCGCGCCGCCTTGCCGGGCCTCG 360 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 CAATGCCGGAGGAGAAGGAGTACGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGTGG 420 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 ACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCA 480 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 AGGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGATGCGTAG 540 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 TTCTTTTCCCTGTTGCTGTTACATTCTTCATCACCTGGTGGTTTGTTAAGTTTGTTGATG 600 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 GATTTTTCAGTCCACTGTATGCAAAGCTTGGATTTGATATATTTGGCCTTGGGTTTTTGA 660 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 CTTCCTTGCTATTCATATTCCTAGTTGGAATATTTGTTTCTTCATGGGTGGGTTCAACTG 720 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 TCTTTTGGATTGGAGAATGGTTTATTAAGAAAATGCCTTTTGTAAGGCACATATATTCTG 780 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 CATCGAAGCAAGTTAGCACTGCTGTTTCACCAGATCAAAATACAACGGCATTTAAAGAAG 840 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 TTGCAATAATTAGTCATCCCCGTATTGGTGAATATGCATTTGGATTCATAACATCGACGA 900 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 TGATCCTTCAGACTGACAAAGGTGATGAAGAACTGTGCAGTGTATATGTGCCAACCAATC 960 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 ATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCGAATTTGT 1020 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 CCATTCGAGAAGGGATAGAAATCATTGTTTCTGGAGGAATGACCATGCCGCAGGTGATTG 1080 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 CAGCACCAGGACAAACACCCCATAAGGGTCAGAGCACCCGTTTAAACAGAATGATGAGTG 1140 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 CGTGAGTACATCAGGTCTGCCCAGAGTTGCTGAGAGAGGGCAAATCGGTGGATGACAAAG 1200 consensus_14728#1 ------------------------------------------------------------ consensus_14728#0 CTGGAACAAGGTGATTGAGAAGCAGCA-TTGCTGGTAGATTAGGCAGATCAAAATACGAA 1259 consensus_14728#1 ACCAAAGGGGTTGATTGAGAAGCAGCACTTGCTGGTAGATTAGGCAGATCCAAATACGAA 60 ** * **************** ********************** ********* consensus_14728#0 AGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAAT 1319 consensus_14728#1 AGTCAGTGTTGACTAGTCCGCATCGCTTAGGTTTGCTCGCTGAGTGAAAAGTTGTGTAAT 120 ************************************************************ consensus_14728#0 CTTTCAATCACGCTCCAAATGTATATCAGTACTGTGACCAATAGTATTTATACTCCTTTC 1379 consensus_14728#1 CTTTCAATCACGCTCCAA-TGTATATCAGTACTGTGACCA-TAGTATTTATACTCCTTTC 178 ****************** ********************* ******************* consensus_14728#0 AAAAGAAAAAAAAACGATAGCATTTGTACCTTGTTTAAAAAAAA 1423 consensus_14728#1 AAAGAAAAAANAATCGATAGCATTTGTACCTTGTTTAAAAA--- 219 *** ***** ** *************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||