These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1469 fasta sequence [CGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGC-TGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCTGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGC-TGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGC-TTGAAAATGGGAAGAA-GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATG-CAAACA-AAGAAGTGTATGCATCGATTTT-TACTTC-TTCCA-AGAAGTCAGATTT-CAAGGAGACATACTCAT-GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC-TGCACTGATTTGCTTCATAGCA-TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA-AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATATCTAAGGGGATTTACCAAAAAGTAAGTTATTATTTTGACTAAAAA] [+] EMBL AK102112 [CGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGC TGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCTGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGC TGCCGCTGCCGTGATGGCAAGGGGTGCTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATATCTAAGGGGATTTACCAAAAAGTAAGTTAT ] [+] EMBL C74439 [ GCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGNCGCNCGCTCCTGCTTGTCCGCGCCCGTAGGGTNGCTTCCGCCGTNGGG ] [+] EMBL AU166849 [ ACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGC TGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTC ] [+] EMBL CB649081 [ CCCTACCCCTGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGC TGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACG ] [-] EMBL CB652658 [ ccGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGC TGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTAATGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTT TTAAGGAGCTTGTTGGAATAAAGTTG ] [-] EMBL CB631145 [ GGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGC TGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCGGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTAATTTGTATATCTAAGGAGGGTTACCAAAAAGTAAGTTATT ] [+] EMBL BI805617 [ GTGGGAAATGGGCTAANTGGGAGTAAGCATGC TGCCGCTCCCGTGAT GCAGGGGGT CTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATGCCAAACC AAGAAGTGTATGCATCGATTTT TACTTC TTCC AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCCTTGTCAAGGAAGCCAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACC TTAACA AGC ATACCAGCTCTGAAATCTTCTGT ] [+] EMBL BM419962 [ AGTGGGAGTAAGCATGCGTGCC CTGCCGTGATGGCAGGGGGT CTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCGGCATATG CAAAC AAGAAGTGTATGCATCGATTTTGTACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGC CTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGC AAGT TCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCANTAACA AGC ATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGT ] [+] EMBL BM419541 [ GCATGC TGCCGCT CCGTGATGCCAGGGGGTGCTGAGAAGCTTTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCGGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATAaaaaa ] [+] EMBL AU029706 [ tnCTGAGAAGC TTGAAAATGGGAAGAA GGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGNCCATGCACCAGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTTCCAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAAAAAAaaaa ] [+] EMBL BQ906811 [ C TTGAAAATGGGAAGAATGGGGGAGGCTCCCTCTTTGAAACGGTTCAAGGCTGGAGACCATGCACCGGCATATG CCAACN AAGAAGTGTATGCATCGATTTT TACTTCGTTCCA AGAAGTCAGATTT CAAGGAGACATACTCATGGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCCGTGCACTGATTTGCTTCATAGCACTGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCCAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGC ATACCAGCTNTGAAATNTTCTGTA CAGCTTGTTGGAATAAAGTTGCTTAaaaa ] [+] EMBL AU166850 [ AGCATATG CAAACA AAGAAGTGTATGCATCGATTTT TACTTC TTCCA AGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACA AGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATATCTAAGGGGATTTACCAAAAAGTAAGTTATTATTTTGACTAAAAA] [+] EMBL BI796306 [ G CAAACACAAGAAGTGTATGCATCGATTTT TACTTC TTCCACAGAAGTCAGATTT CAAGGAGACATACTCAT GCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCC TGCACTGATTTGCTTCATAGCA TGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCCTTGTCAAGGAAGCCAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACACAGCCATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATAaaaaaaaaa ] consensusID : consensus_14731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1455 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGCTCTCTCTCTTTCTCGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGCTTGAAAATGGGAAGAAGGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATGCAAACAAAGAAGTGTATGCATCGATTTTTACTTCTTCCAAGAAGTCAGATTTCAAGGAGACATACTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTCATAGCATGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK109370 [TTCCTCGAGCACTGTTGGCCTACTGGCTCTCTCTCTTTCTCGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCTGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAAGCTTGAAAATGGGAAGAAGGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGAGACCATGCACCAGCATATGCAAACAAAGAAGTGTATGCATCGATTTTTACTTCTTCCAAGAAGTCAGATTTCAAGGAGACATACTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTCATAGCATGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL CB631144 [ TCTCCCCGTCTCGATTCCCCACCAGCGGCGAAACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTCACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCACTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTNCACG ] [+] EMBL CB652657 [ CCGCGGCGGGGGCGGCGACGGCGGCGCCACGGGCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCCGCGCCCGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAGTGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGC ] consensusID : consensus_14731#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AGTGCCCGGTCACCGGGCTNCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTNTGGCCATGTGCTTAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATTCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAACTTTGAAAATGGGGAAGAAGGGGGAGGCTCCCTCTTTTNAAGCCGGTTCCAAAGGCTTTGGAGGACCCATTGCACCCAGCATATTGCAAAACCAAAGGAAGGTTTAATTCCATCCGATTTTTTNACCTTTCCTTTCCCCAGGAAGGTCAAATT] [+] EMBL C28069 [AGTGCCCGGTCACCGGGCTNCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTNTGGCCATGTGCTTAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATTCCATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCTGAGAACTTTGAAAATGGGGAAGAAGGGGGAGGCTCCCTCTTTTNAAGCCGGTTCCAAAGGCTTTGGAGGACCCATTGCACCCAGCATATTGCAAAACCAAAGGAAGGTTTAATTCCATCCGATTTTTTNACCTTTCCTTTCCCCAGGAAGGTCAAATT] consensusID : consensus_14731#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [ATTTGCTTCCATAGCATGGTTCCCCTGCAAGTTTCTTCATTGTAATTTTAGTTNCCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCNCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATNCCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C98797 [ATTTGCTTCCATAGCATGGTTCCCCTGCAAGTTTCTTCATTGTAATTTTAGTTNCCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCNCTGTGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAATAGTTTGATNCCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14731#0 CGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAAAC 60 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ------------------------------------------------------------ consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 CCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGGTG 120 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ------------------------------------------------------------ consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 CTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCCCG 180 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ------------------------------------------------------------ consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACCTC 240 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ------------------------------------------------------------ consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 ACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGGGT 300 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ------------------------------------------------------------ consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 TCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGGGC 360 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ------------------------------------------------------------ consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCGAC 420 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ------------------------------------------------------------ consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 CCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTGCC 480 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ------------------------------------------------------------ consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GCGCCCGCCGTCGCTGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGGCG 540 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ----------------------TTCCTCGAGCACTGTTGGCCTACTGGCTCTCTCTCTTT 38 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 CTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGATC 600 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 CTCGTCTCCTCCTATCCGCGTCCATCTCTCTCCCCGTCTCGATTCCCCACCAGCGGCGAA 98 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 CCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCCAG 660 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ACCCTAACCCTAGAGCGGCCACCGCCATGGAGAAGCGCGCGACCACCACCAGGGCGGTGG 158 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 TGCCCGGTCACCGGGCTCGATTTCAATGGGAAGTACCAATTCCTCGCGCTTCGCAAGTGT 720 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 TGCTCCGCCTCGACGACCTCTCCCTTCCGCCGCGCCGCCTCACCGTGCCGTCCCGCCTCC 218 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGTGCTTGGTATGC 780 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 CGGTCTCCCACCTCCTCCGCGCGCTGCCGCAGCCGCTGCTCGAGTCGTCGTCGTTCTACC 278 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 CATAAGGAGTTTGATGAGGCGGACAAGATGCCGCTCAACGGAACTGAGGACGAGGTTGCG 840 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 TCACCGCCGATGGCCGCCCGCTCCTGCTGTCCGCGCCCGTGGCGTCGCTTCCGCCGTCGG 338 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGGTGAAGGAAAAGAAGGAGAAGAAG 900 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 GTTCGGTCCAGCTCCGCCTCCGCGCGCTCCGCGGCGGTGGCGGCGACGGCGGCGCCACGG 398 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCGCTGCCGTGATGGCAGGGGGTGCT 960 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 GCGCCGAGTCCCGCGACTGCTACCTCTCCATGTACCTCGCGAAGAAGCCCGACAAGGCCG 458 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GAGAAGCTTGAAAATGGGAAGAAGGGGGAGGCTCCCTCTTTGAAGCGGTTCAAGGCTGGA 1020 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 ACCCCAACGAGGCGCGGCTCTCCCGCTTCACCTGCTGCGCGCTCTCCGGCGAGCCGCTTG 518 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GACCATGCACCAGCATATGCAAACAAAGAAGTGTATGCATCGATTTTTACTTCTTCCAAG 1080 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 CCGCGCCCGCCGTCGCCGATCGCCTGGGTAACCTCTTCAACAAGGAGGCCCTCGTCGAGG 578 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 AAGTCAGATTTCAAGGAGACATACTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGC 1140 consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 CGCTCCTCCACAAGCGCCTCCCCAAGGCGCTCTCACACATCAGGGGTCTCAAGGACATGA 638 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 GATCTTCTATTGAGAGATGGTAATGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTC- 1199 consensus_14731#3 --------------------------------------------------ATTTGCTTCC 10 consensus_14731#1 TCCCCATCCACCTGCATCCTAAGCCTGATGCCGATGCGGCTGGTGAGGAGGTCCGGTTCC 698 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 ATAGCATGGTTCACCTGCAAGTTTCTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGC 1259 consensus_14731#3 ATAGCATGGTTCCCCTGCAAGTTTCTTCATTGTAATTTTAGTTNCCGGTGTTCTTCATGC 70 consensus_14731#1 AGTGCCCGGTCACC----GGGCTC---GATTTCAATGGGAAGTACCAAT--TCCTCGCGC 749 consensus_14731#2 AGTGCCCGGTCACC----GGGCTNC--GATTTCAATGGGAAGTACCAAT--TCCTCGCGC 52 * ** *** * * * *** *** * * * * ** ** ** consensus_14731#0 TTTG-ATTACTGATGTGGGGCTCTGTGTTTCCATTGTCAAGGAAGCAAAG-TGTCGGAGT 1317 consensus_14731#3 TTTG-ATTACTGATGTGGGGCNCTGTGTTTCCATTGTCAAGGAAGCAAAG-TGTCGGAGT 128 consensus_14731#1 TTCGCAAGTGTGGCCATGTGCTCAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGT 809 consensus_14731#2 TTCGCAAGTNTGGCCATGTGCTTAGCGTGAAGGCTCTCAAGGAGGTGAAGACCTCGGCGT 112 ** * * ** * ** * ** * ******* * *** **** ** consensus_14731#0 ATTTGAAAGATGTGTGAAATATGTAATAGTTTGATACCATTAACAAGCAATACCAGCTCT 1377 consensus_14731#3 ATTTGAAAGATGTGTGAAATATGTAATAGTTTGATNCCATTAACAAGCAATACCAGCTCT 188 consensus_14731#1 GCTTG------GTATGCCATA---AGGAGTTTGATGAGGCGGACAAG--ATGCC-GCTCA 857 consensus_14731#2 GCTTG------GTATTCCATA---AGGAGTTTGATGAGGCGGACAAG--ATGCC-GCTCA 160 *** ** * *** * ******** ***** ** ** **** consensus_14731#0 GAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTATATCTAAGGGGATTT 1437 consensus_14731#3 GAAATCTTCTGTAGCAGCTTGTTGGAATAAAGTTGCTTATTTGTNTAAAAAAAAAAAAAA 248 consensus_14731#1 ACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGG 917 consensus_14731#2 ACGGAACTGAGGACGAGGTTGCGGCATTGAGGCTGAGGATGGAGGAGGAGAGGGGGAAGG 220 * * * ** *** * * * * * ** ** * * consensus_14731#0 ACCAAAAAGTAAGTTATTATTTTGACTAAAAA---------------------------- 1469 consensus_14731#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------- 289 consensus_14731#1 TGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCG 977 consensus_14731#2 TGAAGGAAAAGAAGGAGAAGAAGGTGGGAAATGGGCTAAGTGGGAGTAAGCATGCTGCCG 280 * ** * * * *** consensus_14731#0 ------------------------------------------------------------ consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 CTGCCGTGATGGCAGGGGGTGCTGAGAAGCTTGAAAATGGG-AAGAAGGGGGAGGCTCCC 1036 consensus_14731#2 CTGCCGTGATGGCAGGGGGTGCTGAGAACTTTGAAAATGGGGAAGAAGGGGGAGGCTCCC 340 consensus_14731#0 ------------------------------------------------------------ consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 TCTTTGAAG--CGGTTC--AAGGCT---GGAGACCA--TGCACC-AGCATAT-GCAAA-- 1083 consensus_14731#2 TCTTTTNAAGCCGGTTCCAAAGGCTTTGGAGGACCCATTGCACCCAGCATATTGCAAAAC 400 consensus_14731#0 ------------------------------------------------------------ consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 CAAAGAAGTGTATGCATCGATTTTTACTTCTTCCAAGAAGTCAGATTTCAAGGAGACATA 1143 consensus_14731#2 CAAAGGAAGGTTTAATTCCATC--CGATTTTTTNACCTTTCCTTTCCCCAGGAAGGTCAA 458 consensus_14731#0 ------------------------------------------------------------ consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 CTCATGCCGGTCACTTCCCCTTGGAAGGAACTGAAGCGATCTTCTATTGAGAGATGGTAA 1203 consensus_14731#2 ATT--------------------------------------------------------- 461 consensus_14731#0 ------------------------------------------------------------ consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 TGGCTTGGAGGTGAACATCCTGCACTGATTTGCTTCATAGCATGGTTCACCTGCAAGTTT 1263 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 ------------------------------------------------------------ consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 CTTCATTGTAATTTTAGTTGTCGGTGTTCTTCATGCTTTGATTACTGATGTGGGGCTCTG 1323 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 ------------------------------------------------------------ consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 TGTTTCCATTGTCAAGGAAGCAAAGTGTCGGAGTATTTGAAAGATGTGTGAAATATGTAA 1383 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 ------------------------------------------------------------ consensus_14731#3 ------------------------------------------------------------ consensus_14731#1 TAGTTTGATACCATTAACAAGCAATACCAGCTCTGAAATCTTCTGTAAAAAAAAAAAAAA 1443 consensus_14731#2 ------------------------------------------------------------ consensus_14731#0 ------------ consensus_14731#3 ------------ consensus_14731#1 AAAAGGCCACAT 1455 consensus_14731#2 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||