cluster # 14733

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Oryza sativa
cluster # 14733 cluster # 14733 Sequences # 18 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14733#0 length = 1241 sequences # 12

consensus_14733#1 length = 729 sequences # 5
consensus_14733#2 length = 319 sequences # 1

consensusID : consensus_14733#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1241
fasta sequence

                              [GCCTTTTCCCTCTTCCTCACCTGCCTGACCTGGCCTGGCCTGGCCCCCAATCAAAAACGAGCGACCTCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCAT-GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC-GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG-AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC-GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC-TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC-ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACAAGTTGAAGCGATTGATACGTTTGTTGGGCTACTTATAAAGG]

[+] EMBL AK065728             [GCCTTTTCCCTCTTCCTCACCTGCCTGACCTGGCCTGGCCTGGCCCCCAATCAAAAACGAGCGACCTCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCTTGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACAAGTT                                     ]
[+] EMBL OSS3593A             [                                                                  TCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCA  NATNGTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF307062             [                                                                                                   AACCAATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB618452             [                                                                                                                                                                CGCCTCCTCCTCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTACTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCC                                                                                                                                                                                                                                                                      ]
[+] EMBL AU182887             [                                                                                                                                                                                                              GGATTTAATATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU172919             [                                                                                                                                                                                                                       ATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACTGTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU183136             [                                                                                                                                                                                                                                                             AGCCCAAGGAGCAGGCCAATGNTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTTTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTTTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK061983             [                                                                                                                                                                                                                                                                                                                         TTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAACACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGCCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACAAGTTGAAGCGA                              ]
[-] EMBL CB654035             [                                                                                                                                                                                                                                                                                                                                                                                                                    AAGAGCGGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAAGAAGTTGAAGCGATTGATACGTTTGTTGGGCTACTTATAAAGG]
[+] EMBL CA999590             [                                                                                                                                                                                                                                                                                                                                                                                                                            GCTATCCAACCCTTGAAGAGAAAAAAGCTTTATGTAAC TTACATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGGTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCTTAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAACA TAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTGTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGCTTGAGGA GATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTCNAC ATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTG                                                                                                                                                                                                ]
[+] EMBL BP184709             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAA                                                      ]
[+] EMBL CB683646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACAAGTTGA                                   ]




>consensus_14733#0
GCCTTTTCCCTCTTCCTCACCTGCCTGACCTGGCCTGGCCTGGCCCCCAATCAAAAACGA
GCGACCTCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTG
CCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCAC
GCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCATGTTCAACA
GGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGT
TAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCG
CAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGCGGCTATCCAAT
CCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGA
GAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATG
CTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACG
TTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATG
CTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAAC
TGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCAC
CTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAG
CATCAGCTGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTT
CACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTC
TAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAG
AGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCT
GTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGT
CATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACA
AGTTGAAGCGATTGATACGTTTGTTGGGCTACTTATAAAGG

consensusID : consensus_14733#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 729
fasta sequence

                              [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC-GCGCC-GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCG-GCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGC-AGCCATG-TTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGANGGCTAAGGAG-TCTNAAAAAGCAAAGAATAAAAGAGCGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACGTTGATAAGACTATGGATGAAATTAATNAACAGAANGAAAAA]

[+] EMBL AU085945             [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC GCGCC GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCG CCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCG CCTAGGTTTTGACCGCCGCGGCG GCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGCAAGCCATG TTCAACAGGCTCTTTGGTAAGCCCAAGGAGCANGCCAATGCTAGTGCGTTGGNCACGCTTGATAAGGTAAATGAGACCCTTGACATGCTGGAGAAGAANGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGANGGCTAAGGAG TCTNAAAAAGCAAAGAATAAAAGA                                                                                                                                                                                                                                          ]
[+] EMBL AU101457             [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC GCGCC GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCGCGCG GGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGC A NAATGTTTCAACAGGCTCTTTGGTAAG CCAAGGAGCAGGCCAATGCTAGTGCGTTGG CACGNTTGATAAGTTAAATGAGACCCTTGANATG TTGAGAAGAAGGAGAAAGT TTAGNGAAAA  GCAGCg                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU183137             [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC GCGCC GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCG GCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGC AGCCATG TTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAG                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU101461             [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC GCGCC GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCG GCGCGGGCTCTGCTCGGATCGCCGGTGGTNCGGCCGGAACATGAGTTTGGATTTAATA                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU085946             [                                                                                     GCCGACGAATCAGGTGAGCGGNNCCGGCCTTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCG GCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGC AGCCATG TTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCT CAAAAGCAAAGAATAAAAGAGCGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACGTTGATAAGACTATGGATGAAATTAATNAACAGAANGAAAAA]




>consensus_14733#1
AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGC
CTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGCGCGCCGCCCTCCTCCC
CCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGC
CGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCC
GCGGCGGCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTT
AATATTACAGGCGCAGCCATGTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAAT
GCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAG
GAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGANGGCTAAGGAGTCTNAAAAA
GCAAAGAATAAAAGAGCGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATGAACAACAA
ATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCT
GCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCA
ATGCAAAAGGCGACAAATATTGATGACGTTGATAAGACTATGGATGAAATTAATNAACAG
AANGAAAAA

consensusID : consensus_14733#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [TGTNCAACGAGTCTATTCTACAATATAATTTCCCATGTGTGTACNATCTTTTGGGGATAGTCAGCAATCGAAGATGAGATGCTGCTGCAGTCCAGTACTCCAGTGTTGTGTTTTAGTGGCTTTGGGGGTGGGGGCCGGGTGTCGTCTGTTTTCCACTGGACATAATTTAAGTTAATCTGGCACCAGTAAGCTCCAAGCTAATCCANAGTCATGCAATGTGCATTCTGTCGCACAATATTTTTCATTGACCATTATCTGAACCGTGTAAAAAAAGTTGAAGCGATTGATACGTTGTTGGCTTTCTGCTTCAAAAAAAAAA]

[+] EMBL BI807246             [TGTNCAACGAGTCTATTCTACAATATAATTTCCCATGTGTGTACNATCTTTTGGGGATAGTCAGCAATCGAAGATGAGATGCTGCTGCAGTCCAGTACTCCAGTGTTGTGTTTTAGTGGCTTTGGGGGTGGGGGCCGGGTGTCGTCTGTTTTCCACTGGACATAATTTAAGTTAATCTGGCACCAGTAAGCTCCAAGCTAATCCANAGTCATGCAATGTGCATTCTGTCGCACAATATTTTTCATTGACCATTATCTGAACCGTGTAAAAAAAGTTGAAGCGATTGATACGTTGTTGGCTTTCTGCTTCAAAAAAAAAA]




>consensus_14733#2
TGTNCAACGAGTCTATTCTACAATATAATTTCCCATGTGTGTACNATCTTTTGGGGATAG
TCAGCAATCGAAGATGAGATGCTGCTGCAGTCCAGTACTCCAGTGTTGTGTTTTAGTGGC
TTTGGGGGTGGGGGCCGGGTGTCGTCTGTTTTCCACTGGACATAATTTAAGTTAATCTGG
CACCAGTAAGCTCCAAGCTAATCCANAGTCATGCAATGTGCATTCTGTCGCACAATATTT
TTCATTGACCATTATCTGAACCGTGTAAAAAAAGTTGAAGCGATTGATACGTTGTTGGCT
TTCTGCTTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14733#0      GCCTTTTCCCTCTTCCTCACCTGCCTGACCTGGCCTGGCCTGGCCCCCAATCAAAAACGA 60
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      GCGACCTCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTG 120
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      CCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCAC 180
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      GCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCATGTTCAACA 240
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      GGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGT 300
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      TAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCG 360
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      CAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGCGGCTATCCAAT 420
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      CCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGA 480
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      GAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATG 540
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      CTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACG 600
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      TTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATG 660
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      CTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAAC 720
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      TGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCAC 780
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      ------------------------------------------------------------
                                                                                   

consensus_14733#0      CTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAG 840
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      --------------------------------------------AATCCGCCGCCGCGCT 16
                                                                                   

consensus_14733#0      CATCAGCTGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTT 900
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      GCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCA 76
                                                                                   

consensus_14733#0      CACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTC 960
consensus_14733#2      -----------------------------------------------TGTNCAACGAGTC 13
consensus_14733#1      CGCCCGCCCGCCGACGAATCAGGTGAGCGCGCCGCCCTCCTCCCCCTCCCGCTATAGATC 136
                                                                          * *    **

consensus_14733#0      TAG-CTAC--AATATAATTTCCCATGT-GTGTACAATCTTT-GGGGATAGTCAGCAATCA 1015
consensus_14733#2      TATTCTAC--AATATAATTTCCCATGT-GTGTACNATCTTTTGGGGATAGTCAGCAATCG 70
consensus_14733#1      CGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAAC--TCC 194
                              *   ** **    **   *  *       * *   *  ****   * *  ** 

consensus_14733#0      AAGA-GAGATGC-TGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGT 1073
consensus_14733#2      AAGATGAGATGC-TGCTGCAGTCCAGTACTCCAGTGTTGTGTTTTAGTGGCTTTGGGGGT 129
consensus_14733#1      GCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCGGCGCGGGC 254
                         **   *****  **  *  ***    * * **  **        * ***   * *** 

consensus_14733#0      G-----------TCGTCTGTTTTCCA-T--GCACATAATTTAAG--TTAATCTGGCA--- 1114
consensus_14733#2      GGGGGCCGGGTGTCGTCTGTTTTCCACT--GGACATAATTTAAG--TTAATCTGGCA--- 182
consensus_14733#1      TCTGCTCGGA--TCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGC 312
                                   *** * **  ***     * **** * **  *  ***** *  **   

consensus_14733#0      ----------C-AGTAAGCTCCAAGCTAATCCATAGTCATG---CAATG----TGCATTG 1156
consensus_14733#2      ----------CCAGTAAGCTCCAAGCTAATCCANAGTCATG---CAATG----TGCATT- 224
consensus_14733#1      GCAGCCATGTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTG 372
                                   *  * ****   * *** **  **        *****    *** ** 

consensus_14733#0      CTGTCGCACAATATTTTTCATT-GACCATGA----AGCCGTGTAAAACAAGTTGAAGCGA 1211
consensus_14733#2      CTGTCGCACAATATTTTTCATT-GACCATTATCTGAACCGTGTAAAAAAAGTTGAAGCGA 283
consensus_14733#1      GCCACGCTTGATAAGTTAAATGAGACCCTTGAC--ATGCTGGAGAAGAAGGAGAAAGTCT 430
                           ***   ***  **  **  **** *      *  *  *  **  * *   ***   

consensus_14733#0      TTGATACGTTTGTTGGG---CTACTTATAAAGG--------------------------- 1241
consensus_14733#2      TTGATACGTT-GTTGGCTTTCTGCTTCAAAAAAAAAA----------------------- 319
consensus_14733#1      TAGAGAAAAAGGCAGCCGCAGAACTGGAGANGGCTAAGGAGTCTNAAAAAGCAAAGAATA 490
                       * ** *     *  *        **    *                              

consensus_14733#0      ------------------------------------------------------------
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      AAAGAGCGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGC 550
                                                                                   

consensus_14733#0      ------------------------------------------------------------
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      TAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTA 610
                                                                                   

consensus_14733#0      ------------------------------------------------------------
consensus_14733#2      ------------------------------------------------------------
consensus_14733#1      CGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGG 670
                                                                                   

consensus_14733#0      -----------------------------------------------------------
consensus_14733#2      -----------------------------------------------------------
consensus_14733#1      CGACAAATATTGATGACGTTGATAAGACTATGGATGAAATTAATNAACAGAANGAAAAA 729