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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1438 fasta sequence
[TCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGTAATGGAGAAAATTGCCTTCGATGTTTATTTCCTGCTTTCTGTAAATGATTTGTCTTGTTTTGATTGCATTGATATTTTGCAAGAGTAACAGATAAAAACTTTGAGTGCATCATTAGATCG]
[+] EMBL AK111902 [TCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGAAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACGGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTC TTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGTAATGGAGAAAATTGCCTTCGATGTTTATTTCCTGCTTTCTGTAAATGATTTGTCTTGTTTTGATTGCATTGATATTTTGCAAGAGTAACAGATAAAAACTTTGAGTGCATCATTAGATCG]
[+] EMBL AK111805 [TCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGTAATGGAGAAAATTGCCTTCGATGTTTATTTCC ]
[+] EMBL CA999273 [ ACCTTCCCAGCCGAGAGTACCTTCGCCGAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCATATCGATGGTTCCCTACTGTCCTCC ]
[+] EMBL CB666384 [ ACAGGACCTTTGAGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACA CAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGA ]
[-] EMBL CB665451 [ GAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATA ]
[-] EMBL CB683598 [ TGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGAAGATAATTAAGGAATAGGGGACAATGTGATATGCTtaaaagga ]
[-] EMBL CB660372 [ CTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGGAATGGAGAAAATTGCC ]
[-] EMBL CB668032 [ CTGGAGATC TTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGTAATGGAGAAAAGTGCCTTCGATGTTTATTTCCTGCTTTCTGTA ]
[-] EMBL CB638369 [ GAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGTAATGGAGAAAATTG CTTCGATGTTTA ]
[-] EMBL CB637402 [ AAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTTTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGTAATGGAGAAAATTGCCTTCGATGTTTATTTCCT ]
[-] EMBL CB637095 [ CCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAA CTTTGCTGATATTCCTATTGACAAGA ]
[-] EMBL CB636914 [ CACACACAGGAGGAGACAACAAAAAGCAACGATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAAAATAAGGCATGTTATTATATAAAAAATTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATGT TATTTATCAT ]
[+] EMBL CB682858 [ AAAACAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGTAATGGAGAAAATTGCC ]
consensusID : consensus_14743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1289 fasta sequence
[TTTGATTGCGTTTGACAGGCAGTACGGGCCCGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATCATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCTTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAGCAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGCGGCACATCTTTTTCGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTACAATAAGGCGTGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACATTTACAAGGGTG-AAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCTCATTTGTACTTCGCATCAGTAATGGAGAAAATTGGCTTCGATGTTAAAAAAAAAGAAAG]
[+] EMBL CB660371 [TTTGATTGCGTTTGACAGGCAGTACGGGCCCGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTTATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATTATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAACAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGAGGCACATCTT ]
[-] EMBL CB628639 [ TCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATCATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCTTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAGCAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGCGGCACATCTTTTTCGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTACAATAAGGCGTGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACATTTACAAGGGTG AAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCTCATTTGTACTTGGCATCAGTAATGGAGAAAATTGGCTTCGATGTT ]
[-] EMBL CB620708 [ CCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATCATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCTTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAGCAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGCGGCACATCTTTTTCGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTACAATAAGGCGTGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACATTTACAAGGGTG AAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCTCATTTGTACTTCGCATCAGTAATGGAGAAAATTGGCTTCGATGTTAAAAAAAAAG ]
[-] EMBL CB630622 [ AGCTCCTCCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCTGAGAGTCCATTCGCCGCATCAGCGCCTGCTGGAAACAGCATATCCACAATCATATAGGAGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCTTTTAGGCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAGCAAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGTCATAATTAGGCGGCACATCTTTTTCGAAAAAAAATAATTAGGAGGCACATAAACACATGGTGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGGTGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACTTGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAATTATACTGTCCTACAATAAGGCGTGTTATTATTTACATATTTAGTGTTATCTTCTTTTTTTTAGGGTATAATGGCCTACTGGCCTTTACATTTACAAGGGTGAAAAAAAAAAAGCAGAACCTTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCTCATTTGTACTTCGCATCAGTAATGGAGAAAATTGGCTTCGATGTTTAAAAAAAAAAAAG]
consensusID : consensus_14743#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[TCACCTTCCCAGCCGAGAGTACCTTCGCCGACGTTGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGGTCTGTGTGTTGTGTCATTCATTGGTCATTGCCAGAATTATACCTCTAGTTGTTCCATTTCTCCCTGGTTGAAGTTTGTTTAGTGGCTCAAGGATTATCTACTTGATTATAGTGATAAATTAAATAATTTAAGTAATGAACTTAATGATTAGGTTAATAAGTGCAGTAGAAGAACGGTGTTTCTTACCAAAAAA]
[+] EMBL CB000381 [TCACCTTCCCAGCCGAGAGTACCTTCGCCGACGTTGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCCTGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACCATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTACAGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCCTACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCTTCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGGCGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGCAGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGGTCTGTGTGTTGTGTCATTCATTGGTCATTGCCAGAATTATACCTCTAGTTGTTCCATTTCTCCCTGGTTGAAGTTTGTTTAGTGGCTCAAGGATTATCTACTTGATTATAGTGATAAATTAAATAATTTAAGTAATGAACTTAATGATTAGGTTAATAAGTGCAGTAGAAGAACGGTGTTTCTTACCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14743#0 TCAGTTCCGGCGAGCTCGCACCAGATATACCTCACCTTCCCAGCCGAGAGTACCTTCGCC 60
consensus_14743#1 ------------------------------------------------------------
consensus_14743#2 -------------------------------TCACCTTCCCAGCCGAGAGTACCTTCGCC 29
consensus_14743#0 GAGGACGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCC 120
consensus_14743#1 --------TTTGATTGCGTTTGACAGGCAGTACGGGCCCGTGCGCGACGTGAGGATCCCC 52
consensus_14743#2 GACGTTGACGTCGCCAACTACTTCGGGCAGTACGGGCCGGTGCGCGACGTGAGGATCCCC 89
* * * ************* *********************
consensus_14743#0 TGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACC 180
consensus_14743#1 TGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACC 112
consensus_14743#2 TGCCAAGAGCGGCGCATGTTCGGGTTCGTCAGCTTCCAGAGCCCGGAGACGGTGAGCACC 149
************************************************************
consensus_14743#0 ATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTAC 240
consensus_14743#1 ATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTAC 172
consensus_14743#2 ATCCTGATGCGGCGCAACCCGCATTTCATCTGCGGATCGCGGGTTCTCGTCAAGCCCTAC 209
************************************************************
consensus_14743#0 AGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCC 300
consensus_14743#1 AGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCC 232
consensus_14743#2 AGGGAGAAATCCAAATGCGTCGACAGGACGTGCGTGGACAACATCAAATCGATGGTTCCC 269
************************************************************
consensus_14743#0 TACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCT 360
consensus_14743#1 TACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCT 292
consensus_14743#2 TACTGTCCTCCACGCTTCTTTGAGTTTGATCAAGAGCTCTACACAGCAGAGTATGATGCT 329
************************************************************
consensus_14743#0 TCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGG 420
consensus_14743#1 TCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGG 352
consensus_14743#2 TCGAGGTTGATGAGGAAGCAGTTGGCAGAGAAGCGCGAGATGCTCTTGGAGATGGAGAGG 389
************************************************************
consensus_14743#0 CGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGC 480
consensus_14743#1 CGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGC 412
consensus_14743#2 CGGCGCGCCACAGTTCGGAGGCTTGAATCCATGCCGCCACAGTTTGCATACTTCGATTGC 449
************************************************************
consensus_14743#0 AGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTT 540
consensus_14743#1 AGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGATTCGAAACAACTCGACCTT 472
consensus_14743#2 AGCATTGAGGACGCCAGTCCCCTCCATTCTCTCCAGGATGGTCTGTG-TGTTGTGTCATT 508
**************************************** * * * * **
consensus_14743#0 ATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCT 600
consensus_14743#1 ATGAATCCATCCCTTGCATCCCCTGATCCACTGGAGATCGTTTCAAACAGCCAAGCTCCT 532
consensus_14743#2 CATTGGTCATTGCCAGAATTATACC-TCTAGTTGTTCCATTTCTCCCTGGTTGAAGTTTG 567
*** * * ** ** * * * ** * * *
consensus_14743#0 CCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCT 660
consensus_14743#1 CCTACACAGGCAGGCAACATTTATGATGACCATGAGAGTAACCAGATTGAACTGCTGCCT 592
consensus_14743#2 TTTAGTGGCTCAAGGATTATCTACT-TGATTATAGTGATAAATTAAATAATTTA--AGTA 624
** ** * * ** ** *** ** *** * * * *
consensus_14743#0 GAGAGTCCATTCGCCGCATCAGCGCCTGC--TGGAAACAGCATATCCACAATTATATAGG 718
consensus_14743#1 GAGAGTCCATTCGCCGCATCAGCGCCTGC--TGGAAACAGCATATCCACAATCATATAGG 650
consensus_14743#2 ATGAACTTAATGATTAGGTTAATAAGTGCAGTAGAAGAACGGTGTTTCTTACCAAAAAA- 683
** * * * * *** * *** * * * * * * *
consensus_14743#0 AGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCCTTTAG 778
consensus_14743#1 AGGAAAAAAATTACAAAGAGACTTTTGGGCCTTGGGTTCGGAATTCAGGTGCCCTTTTAG 710
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 GCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAAC 838
consensus_14743#1 GCATTTGATGGTAATTTGGTCCAAGAGTAACATAAGTATACACACACAGGAGGAGACAGC 770
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 AAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGT 898
consensus_14743#1 AAAAAGCAACAATATTTTTGTTGTAGATAGAGAAGGAAGGCAGAAGAAAATCTCACTGGT 830
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 CATAATTAGGAGGCACATCTTTTTTGAAAAAAAATAATTAGGAGGCACATAAACACATGG 958
consensus_14743#1 CATAATTAGGCGGCACATCTTTTTCGAAAAAAAATAATTAGGAGGCACATAAACACATGG 890
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 TGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGG 1018
consensus_14743#1 TGTTCATTTTATACTTTAGAAGAGGACAGAAACAACAGCTTACAAAAGAATCTCACATGG 950
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 TGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACT 1078
consensus_14743#1 TGCAGTAGCTAGCTTGCAAGAGGTAAGGACAGTTACAAAAGAATTACAATGGTGGAAACT 1010
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 TGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAA 1138
consensus_14743#1 TGAGATATAGATGTGCAGTTTGACTATAATTAAGGAATAGGGGACAATGTGATATGCTAA 1070
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 TTATACTGTCCTAGAATAAGGCATGTTATTATTTACATATTTAGTGTTATCTTCTTTTTT 1198
consensus_14743#1 TTATACTGTCCTACAATAAGGCGTGTTATTATTTACATATTTAGTGTTATCTTCTTTTTT 1130
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 TTAGGGTATAATGGCCTACTGGCCTTTACCTTTACAAGGGTGAAAAAAAAAAGCAGAACC 1258
consensus_14743#1 TTAGGGTATAATGGCCTACTGGCCTTTACATTTACAAGGGTGAAAAAAAAAAGCAGAACC 1190
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 TTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCCCATTTGTACTTATCATCAGT 1318
consensus_14743#1 TTTGCTGATATTCCTATTGACAAGATGAGCAGAGCGTGCTCATTTGTACTTCGCATCAGT 1250
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 AATGGAGAAAATTGCCTTCGATGTTTATTTCCTGCTTTCTGTAAATGATTTGTCTTGTTT 1378
consensus_14743#1 AATGGAGAAAATTGGCTTCGATGTTAAAAAAAAAGAAAG--------------------- 1289
consensus_14743#2 ------------------------------------------------------------
consensus_14743#0 TGATTGCATTGATATTTTGCAAGAGTAACAGATAAAAACTTTGAGTGCATCATTAGATCG 1438
consensus_14743#1 ------------------------------------------------------------
consensus_14743#2 ------------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||