These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1711 fasta sequence [TCCTCTCAAAAAGAAAAAAAGCACCCCGCGCGCTCGAGTCTACGCTCCCATCGCCCTCCGCCTCGCCTCGCCGCAAATCTCACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGGCTCCACGCTCCCTTCCACTTTCGCCGCCGGCGCGCGGACGGACGGGCAGCAGATAGCCATGGCTGCCTCCGAGCAGCGCGT-CGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC-TTCCCCCT-GCCAGAC-ATGC-TCGA-GGCCCACAAAAAGTA-T-GG-T-GGAA-TGGGTACTTT-ATTAGTC-AATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGC-CAGAGACTTTTGTGAGTGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCT-CTTCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCC-TCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGAT-CGGTCCTAATGTCTCGATAT-CAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTGAAATTATGGAGAATG-CAGTTGTTATACACT-CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAATCAACAGTGCGATGGTGTATCTGGGGTTGTGTTTTGGATTATAGATCAT] [+] EMBL AK070806 [TCCTCTCAAAAAGAAAAAAAGCACCCCGCGCGCTCGAGTCTACGCTCCCATCGCCCTCCGCCTCGCCTCGCCGCAAATCTCACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGGCTCCACGCTCCCTTCCACTTTCGCCGCCGGCGCGCGGACGGACGGGCAGCAGATAGCCATGGCTGCCTCCGAGCAGCGCGT CGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTCCCCCT GCCAGAC ATGC TCGA GGCCCACAAAAAGTA T GG T GGAA TGGGTACTTT ATTAGTC AATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGC CAGAGACTTTTGTGAGTGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCT CTTCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCC TCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGAT CGGTCCTAATGTCTCGATAT CAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTGAAATTATGGAGAATG CAGTTGTTATACACT CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCATCAACAGTGCGATGGTGTATCTGGGGTTGTGTTTTGGATTATAGATCAT] [+] EMBL OSS3110A [ tnTCACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGGCTCCACGCTCCCTTCCACTTTCGCCGCCGG GCGCGGACGGACGGGCAGCAGATAGCCATGGCTGCCTCCGAGCAGCGCGTCCGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCAC ] [+] EMBL CA756153 [ ACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGGCTCCACGCTCCCTTCCACTTTCGCCGCCGGCGCGCGGACGGACGGGCAGCAGATAGCCATGGCTGCCTCCGAGCAGCGCGT CGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTCCCCCT GCCAGAC ATGC TCGA GGCCCACAAAAAGTA T GG T GGAA TGGGTACTTT ATTAGTC AATAAGGTCTCCGCAGAGTCTGCANACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACANATGAACT ] [+] EMBL AU065094 [ CCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTNCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTTAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACANTTCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCCCGAGCTTTCCCCTT GCCANAA AT C TCCA NGGCCA AAAAAGTA T GG T GGAA TGGGT ] [+] EMBL AU064638 [ CCGACAGAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGCTTTCCCCCT GCCAGAC ATGC TCGA GGCCCACAAAAAGTA T GGTT GGAA TGGGTACTTT ATTAGTC AATAAGGT ] [+] EMBL AU064649 [ CCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATNCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTNAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTNCCCCTNGCCAGACAATGC TNGAGGGCCCACAAAAAGTATT GG T GGAATTGGGTACTTT ATTAGTC AATAAag ] [+] EMBL AU064805 [ CCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTCCCCCT GCCAGAC ATGCTTCGA GGCCCACAAAAAGTA T GGTT GGAA TGGGTACTTTAATTAGTCAAATAAGGTTTCCG AGAGTNTGNAAACC ATTTNGTGAG TTGTA ] [+] EMBL OSC586 [ ccanatanGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTCCCCCT GCCAGAC ATGC TCGA GGNCCACAAAAAGTA TNGG TGGGAA TGGGTACTTT ATTAGT AATAAGGT TCCG AGAGTNTG AAA CAATTTGntagtct ] [+] EMBL CB000314 [ AAAAGTA T GG T GGAA TGGGTACTTT ATTAGTC CATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGC CAGAGACTTTTGTGAGTGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCT CTTCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCC TCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGAT CGGTCCTAATGTCTCGATAT CAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTGAAATTATGGAGAATG CAGTTGTTATACACT CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGGAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAAC ] [+] EMBL CA998312 [ AAGTA T GG T GGAA TGGGTACTTT ATTAGTC AATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGC CAGAGACTTTTGTGAGTGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCT CTTCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCT ] [+] EMBL CA999183 [ AGTA T GG T GGAA TGGGGACTTT ATTAAT GATAACGTCTCCGCAGAGTCTGC AACCAATTTGGTGAGCTCGTAACTGACCCTGAAACGAATGAACTGTTACACTACACAGAAAAGCGCATAGACTTTTGTGAGTGATCTCATAAATTGTGGGGACTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAAGATAACAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCTGCTTCACTCGGCAACAAAAGCACTTCCATCAGACTATGTTAGGCTAGATCGAGATATTTTATCCCCTCTAACACGAAAGAATGAACTTTACTCATACCTGACTCTCGA ] [+] EMBL AU094422 [ tcCCGCCATACCTCTCCTCATCTTTTAGCCNTCAGGAGATGNCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGAT CGGTCCTAATGTCTCGATAT CAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTGAAATTATGGAGAATG CAGTTGTTATACACT CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAA ] [+] EMBL AU164340 [ CAAAGATCCGGNCCTAATGTCTCGATATACAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGNATGATGTTGAAATTATGGAGAATGNCAGTTGTTATACACTCCAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAA ] [+] EMBL AU172896 [ ACT CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAA ] [+] EMBL AU182885 [ GTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAA ] consensusID : consensus_14753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence [AGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCCTCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGATCGGTCCTAATGTCTCGATATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTG-AAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACC-GTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACA-ATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCAAAAAAAAGGGAAAAA] [-] EMBL CB656555 [AGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCCTCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGATCGGTCCTAATGTCTCGATATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTG AAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACC GTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACA ATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCAAAAAAAAGGGAAAAA] [+] EMBL BI808806 [ CTGGATGATGTTGAAAATTATGGAGAAT CA TTGTTATACACTCAATTGTGGGGTGGAAGTCAACCGGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAAC CC AACTCGGTATCACACATTCTTGGTGAA CC TTGATGTTGAAGATGAAGTGGTTGTA TTAACAGCATTGTGCTCCCCCATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCCAATAAGGTCTGCGGACC ATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCTCAGATTGATATCATTAGTCTATGTTATAGCCAGCTTGAGATCTGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACCAACATATGACCATTTTTTTTTATTGAACTAACGATTTTCATCCAAAAAAAAAA ] consensusID : consensus_14753#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [TTTTTTTTTTTTCGGATAACTTTAGTAAAGTTGGTTTGGTACCATGAACCTGGCATGATAATGATAATGACTATCACACTTTTGTGAAGCTGTATTCTTCCCTTATCCCTTCTATATATCCCAGGAGGAACAGTGCACTGCCTAGAACACTTACATTTTGTTTTAATCCAGTTTAACAGCCATCAAAGCATGCAACAGAGAGAAACGAGGAAATGAGTAGACTAAACCTAGCTTACGCCTTGCTGGTTTTGTAGAAAATATATATATTTTTTGTTAGGGTTAACTTAATTAAGCGGCTATGTGTAGCAACACAATGTGGATTGTGGAAACCAGAATCATAGCCTCCACTTTATTTGTAACGTATAGTTACTGTTGGCACTAGTCATCCCTGGTTATAATTTTTGCCATTCAGGACTTGTTAGACTAAGTACAATAGAGCTGCCATTTATTTGTTGCAATACTGACCATCTTGTTGTAATTGTCAACAGAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGTAATAGTTGTTCCTAACTGCACTCTTTCTAACTTTGGAATTGTTAAGTAATAATGAGAGACTGCACCTATGCATAGAATGTCTTT] [+] EMBL CA762133 [TTTTTTTTTTTTCGGATAACTTTAGTAAAGTTGGTTTGGTACCATGAACCTGGCATGATAATGATAATGACTATCACACTTTTGTGAAGCTGTATTCTTCCCTTATCCCTTCTATATATCCCAGGAGGAACAGTGCACTGCCTAGAACACTTACATTTTGTTTTAATCCAGTTTAACAGCCATCAAAGCATGCAACAGAGAGAAACGAGGAAATGAGTAGACTAAACCTAGCTTACGCCTTGCTGGTTTTGTAGAAAATATATATATTTTTTGTTAGGGTTAACTTAATTAAGCGGCTATGTGTAGCAACACAATGTGGATTGTGGAAACCAGAATCATAGCCTCCACTTTATTTGTAACGTATAGTTACTGTTGGCACTAGTCATCCCTGGTTATAATTTTTGCCATTCAGGACTTGTTAGACTAAGTACAATAGAGCTGCCATTTATTTGTTGCAATACTGACCATCTTGTTGTAATTGTCAACAGAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGTAATAGTTGTTCCTAACTGCACTCTTTCTAACTTTGGAATTGTTAAGTAATAATGAGAGACTGCACCTATGCATAGAATGTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14753#0 TCCTCTCAAAAAGAAAAAAAGCACCCCGCGCGCTCGAGTCTACGCTCCCATCGCCCTCCG 60 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 CCTCGCCTCGCCGCAAATCTCACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGG 120 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 CTCCACGCTCCCTTCCACTTTCGCCGCCGGCGCGCGGACGGACGGGCAGCAGATAGCCAT 180 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 GGCTGCCTCCGAGCAGCGCGTCGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGAC 240 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 GAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCC 300 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 CATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCT 360 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 CGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCT 420 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 CAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTA 480 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 CAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGA 540 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 TGTATGCTCGAGCTTCCCCCTGCCAGACATGCTCGAGGCCCACAAAAAGTATGGTGGAAT 600 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 GGGTACTTTATTAGTCAATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGT 660 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 AGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGCCAGAGACTTTTGTGAG 720 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 TGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGA 780 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 TGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCTCT 840 consensus_14753#1 ------------------------------------------------------------ consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 TCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATC 900 consensus_14753#1 ------------------------------------------AGATCAAGATATTTTATC 18 consensus_14753#2 ------------------------------------------------------------ consensus_14753#0 CCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGAT 960 consensus_14753#1 CCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGAT 78 consensus_14753#2 ----------------------TTTTTTTTTTTTCGGAT----AACTTTAGTAAAGTTGG 34 *** * * ** ***** * ** consensus_14753#0 CAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATAC 1020 consensus_14753#1 CAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATAC 138 consensus_14753#2 TTTGGTACCATGAAC----CTGGCATGATAATGATAATGACTATCACACTTTTGTGAAGC 90 * *** * * ** *** * * ** ** ** ** ** * * * consensus_14753#0 C-TCTCCTCATCTTTTAGCCTCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATG 1079 consensus_14753#1 C-TCTCCTCATCTTTTAGCCTCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATG 197 consensus_14753#2 TGTATTCTTCCCTTATCCCTTCTATATATCCCAGGAGGAACAGTGC-ACTGCCTAGAACA 149 * * ** *** * * ** * ** ** **** * * * * consensus_14753#0 TGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGATCGGTCCTAATGTCTCGA 1139 consensus_14753#1 TGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGATCGGTCCTAATGTCTCGA 257 consensus_14753#2 CTTACATT--TTGTTTTAATCCAGTTTAACAGCCATCAAAGCATG----CAACAGAGAGA 203 ****** * * * *** * * ** ***** * ** ** consensus_14753#0 TATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATT-ATTCTGGAT 1198 consensus_14753#1 TATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATT-ATTCTGGAT 316 consensus_14753#2 AACGAGGAAATGAGTAGACTAAACCTAGCTTACGCCTTGCTGGTTTTGTAGAAAATATAT 263 * ** ***** * * * ** * * *** * ** * * * ** consensus_14753#0 GATGTTGAAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACC 1258 consensus_14753#1 GATGTTGAAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACC 376 consensus_14753#2 ATATTTTTTGTTAGGGTTAACTTAATTAAGCGGCTATGTGTAGCAACACA-ATGTGGATT 322 ** *** ** ** * ** * * * * * ** * consensus_14753#0 GTAGGAAA-ATGGTCAC-GTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCA 1316 consensus_14753#1 GTAGGAAA-ATGGTCAC-GTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCA 434 consensus_14753#2 GTGGAAACCAGAATCATAGCCTCCACTTTATTTGTAAC-GTATAGTTACTGTTGGCACTA 381 ** * ** * *** * * ** * ** ** ** * * * ** * * consensus_14753#0 -CAATTCTTGGTGA-AGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGT 1374 consensus_14753#1 -CAATTCTTGGTGA-AGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGT 492 consensus_14753#2 GTCATCCCTGGTTATAATTTTTGCCATTCAGGAC----TTGTTAGACTAAGTACAATAGA 437 ** * **** * * *** ** * ** * *** * * * * ** * consensus_14753#0 GCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTT 1434 consensus_14753#1 GCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTT 552 consensus_14753#2 GCTGCCATTTATTTGTTGCAATACTGACCATCTTGTTGTAAT--TGTCAACAGAGCACTT 495 *** ** ** * **** * * * ** * * * * ** *** consensus_14753#0 TCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTC 1494 consensus_14753#1 TCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTC 612 consensus_14753#2 CCAGCAGAC-TATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGA 554 ** * * *** ** * * ** * *** * * * * * * * * consensus_14753#0 TCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTA-TAG 1553 consensus_14753#1 TCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTA-TAG 671 consensus_14753#2 ACTTTA--CACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGTAATAG 612 **** ** * * * * * * **** * * * * ** *** consensus_14753#0 CAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTA 1613 consensus_14753#1 CAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTA 731 consensus_14753#2 TTGTTCCTAACTGCACTCTTTCTAACTTTGGAAT-TGTTAAGTAATAATGAGAGACTGCA 671 * * * * *** *** * * * ** * *** * * ** * consensus_14753#0 CAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAATCAACAGTGCG 1673 consensus_14753#1 CAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCAAAAAAAAGGGA 791 consensus_14753#2 CCTATGCAT-AGAATGTCTTT--------------------------------------- 691 * * ** * *** * *** consensus_14753#0 ATGGTGTATCTGGGGTTGTGTTTTGGATTATAGATCAT 1711 consensus_14753#1 AAAA---------------------------------- 795 consensus_14753#2 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||