These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 2862 fasta sequence [GCCACCGCCGCGCGTTGACGGTTAGACGCCACCGCGGGAGGAGAGCCCCTCCCTCCCCGTCCGCGTCCGCGTCCGCCTCATCTCCGCCGCCCTCTTACTCCCCCTCCCCTTCCTCCACTCCGTCCACCTCGGAATCGTCGGCGCGACGCCTCCAAACCCCCGCATCGATTCCTCCCTCCCACCTCACCCCACCCTTCCGCCCGCTCGATCCACCGCCGAAGCGGGCGGCGATGGCGACGCCGTCGTCGTTTTCGTCGGCGAGGAAGAAGGCGCCGAGCCCGCCGAAGCACCGCCACGACGGCACCTCCGGGCTGCCGTTCGGCATGGACTGGAGCCCGCCCCCGAAGAGATGGGAGGGAAGGAACACCATATGGCCACATAACCCTCAAACCGGATGGAGTTACTGTGTGATGATTCCTTCTTGGATCGCTCAGACACCTGAAGCTAGTGCGACTGCTGACAACTTCTTGAAATCCATAGTTTTTTACAGGATACATGTTGGTATACAATCTCCAGAAGGCATCAGCTCTAGCCACGGAGTTCTTCGAAGGTTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAGAACAATTTACAGGTTTAGATATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTCCTGCTGATCAAAGGCC-GAAGTTGACTAGACTTTTGATCAGCATGGACAGAAGACAGGTGACAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGTGGCTGTCAAAGAATATCTTGCGACAAAGGTCAAAGATTTGGAGGTTGAGTTGGAAGCTACGAAGAAAAAAGACAAAGAGATTCTACATCAGGCTGTTTTGACCGAAAGAGAGAAAATTACCCAACTTCAATGGGATAAGGATGAGCTCTACAGGAAGTACTCTGAAATGGAGTCAAACCTGAAGATTGAACAAAATGAGAAAACTCGTGTGCAGTCAGAGAAAACAACTGCTAGCGGTGAAAAAGAAATGTTACTGGAAGAGCTAGAAACTAAACGAAAAGAAGTTGAGAGTTTGCAGCAACATATTGGAGAATTCGAGGCAAAGTCTAAAGCAGATATAAAAGTTCTTGTTAAAGAGGTGAAATCTCTTCGGAACTCCCAAAAAGAGATGAAGAAAGTGCTGAATCAGTATCATGAGGAGAAGACTGAATTAGAGAGGATTGTTAACAGGGAGAAACAGCGGTCAACACGTGCAAGGTTCTCCCGTGAAAAAATTCTTCACGAATGCAGACTGCTCCGTGAGCGTCTACAGGAATGTACTGCCAAGTTTGTTGCAGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA-CCATGAG-CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG-CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC-TGCTGTGAAGAC-GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC-GGCCTTCTCAAAGTTATATGATGAGTA-TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAAACTGTTAAATCAGTACTTCTTACTCATGCAGTTGCACCTCTTCCAGACTG] [+] EMBL AK067701 [GCCACCGCCGCGCGTTGACGGTTAGACGCCACCGCGGGAGGAGAGCCCCTCCCTCCCCGTCCGCGTCCGCGTCCGCCTCATCTCCGCCGCCCTCTTACTCCCCCTCCCCTTCCTCCACTCCGTCCACCTCGGAATCGTCGGCGCGACGCCTCCAAACCCCCGCATCGATTCCTCCCTCCCACCTCACCCCACCCTTCCGCCCGCTCGATCCACCGCCGAAGCGGGCGGCGATGGCGACGCCGTCGTCGTTTTCGTCGGCGAGGAAGAAGGCGCCGAGCCCGCCGAAGCACCGCCACGACGGCACCTCCGGGCTGCCGTTCGGCATGGACTGGAGCCCGCCCCCGAAGAGATGGGAGGGAAGGAACACCATATGGCCACATAACCCTCAAACCGGATGGAGTTACTGTGTGATGATTCCTTCTTGGATCGCTCAGACACCTGAAGCTAGTGCGACTGCTGACAACTTCTTGAAATCCATAGTTTTTTACAGGATACATGTTGGTATACAATCTCCAGAAGGCATCAGCTCTAGCCACGGAGTTCTTCGAAGGTTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAGAACAATTTACAGGTTTAGATATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTCCTGCTGATCAAAGGCC GAAGTTGACTAGACTTTTGATCAGCATGGACAGAAGACAGGTGACAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGTGGCTGTCAAAGAATATCTTGCGACAAAGGTCAAAGATTTGGAGGTTGAGTTGGAAGCTACGAAGAAAAAAGACAAAGAGATTCTACATCAGGCTGTTTTGACCGAAAGAGAGAAAATTACCCAACTTCAATGGGATAAGGATGAGCTCTACAGGAAGTACTCTGAAATGGAGTCAAACCTGAAGATTGAACAAAATGAGAAAACTCGTGTGCAGTCAGAGAAAACAACTGCTAGCGGTGAAAAAGAAATGTTACTGGAAGAGCTAGAAACTAAACGAAAAGAAGTTGAGAGTTTGCAGCAACATATTGGAGAATTCGAGGCAAAGTCTAAAGCAGATATAAAAGTTCTTGTTAAAGAGGTGAAATCTCTTCGGAACTCCCAAAAAGAGATGAAGAAAGTGCTGAATCAGTATCATGAGGAGAAGACTGAATTAGAGAGGATTGTTAACAGGGAGAAACAGCGGTCAACACGTGCAAGGTTCTCCCGTGAAAAAATTCTTCACGAATGCAGACTGCTCCGTGAGCGTCTACAGGAATGTACTGCCAAGTTTGTTGCAGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGT AATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCAACTGTTAAATCAGTACTTCTTACTCATGCAGTTGCACCTCTTCCAGACTG] [+] EMBL AU166705 [ GGATGGAGTTACTGTGTGATGATTCCTTCTTGGATCGCTCAGACACCTGAAGCTAGTGCGACTGCTGACAACTTCTTGAAATCCATAGTTTTTTACAGGATACATGTTGGTATACAATCTCCAGAAGGCATCAGCTCTAGCCACGGAGTTCTTCGAAGGTTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATAT ] [+] EMBL CB630309 [ TCGAAGGCTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCTGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCTAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGTTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAGAACAATTTACAGGTTTAGATATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTCCTGCTGATCAAAGGCCGGAAG TGACTAGACTTTTGAT ] [+] EMBL CB641306 [ GCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCC AGTGGAA ] [+] EMBL CB641305 [ CCTTTCCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACATTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCTCATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTGCAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCT ] [+] EMBL CF197048 [ GTGTTCTCTCTGAGTCCAGTCTAATGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGGGAGAGTCTATCTTAGATCAGCCCAATGAGCGGGTTAGTAGCATGTCAAATCACAGGAAAAAGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAGTGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAAGTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTAGTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAGAACAATTTACAGGTTTNNNTATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTCCTGCTGATnnnnnnn ] [-] EMBL CB680862 [ TTGCAGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTGCACTATAGTTAAACTCTGGATTAATCTTCTTCA AAAAAAAga ] [-] EMBL CB685862 [ AGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGATGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATGGTACACTATAGTTAAACTCTGGATTAATCTTCTT ] [-] EMBL CB630310 [ ACACCATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGCTTGCTTGTTGCTGAGGCTCAACTTCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGCGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGTGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTTCAACTGGAGTGGTAGAG CATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATA ] [+] EMBL AU063422 [ TCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAA ] [+] EMBL AU063569 [ TCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGCGGGCCTTCTCAAAGTTATATGATGGGTATTTGTTATAATGTGG ] [+] EMBL AU163311 [ TCTGTCACGAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA CCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATACTTGCTGTGAAGACGGGAGAAAGAAGGTAGTNATGGGACCGTGCCAAAAAAGCGGGTGCTTAATT ] [+] EMBL AU163312 [ CTTCTGATGATGGTGATAATTCTGATGGTAAACCCTCAGTTACCCATGAG CAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAA ] [+] EMBL AU093019 [ ttcCTGATGATGGTGATAATTCTGATGGTAATCCCTCAGTTACCCATGAGCCAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATCTGCTTATTGACAATGCACAACTGAGGTTGCCGCTTGAATTCTCTCATCCGTAATGCTGTAAATAC TGCTGTGAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAA ] [+] EMBL AU165250 [ CTAAGGTTG CGCTTGAATTCTCTCATCCGTAATGCTGTAAATACNGGCTGTNAAGAC GGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGCTTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGNAGGCTTGCAACTGGAGTGGTAGAGAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAA ] [+] EMBL AU166704 [ CCAGTATATATTCTTGTGAATTAGCTCTTCTAGTTATGC GGCCTTCTCAAAGTTATATGATGAGTA TTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTNTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTANAGAACATGGGTCCCCCTTTTTTGCNCCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCAAAAAAAAAAA ] consensusID : consensus_14756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [TAGCTCTTCTAGTTATGCGGCCTTCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTNGTAGAGAACATGGGTCCCCTTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATNGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTNCCAGCAGGAAGCATTTGTACACTATAGTTAAACTCTGGATTATCTNCTCACCCTAGAGTCTCACTGTAAAAAAA] [+] EMBL OSC31021 [TAGCTCTTCTAGTTATGCGGCCTTCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAGTGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTATCTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTCCTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTNGTAGAGAACATGGGTCCCCTTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATNGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTNCCAGCAGGAAGCATTTGTACACTATAGTTAAACTCTGGATTATCTNCTCACCCTAGAGTCTCACTGTAAAAAAA] consensusID : consensus_14756#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [TTTTGGGGAGGCTTTCAACTGGAGTGGTAGAGCATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCAACTGTTAAATCAGTACTTCTTAAAAAAAAAAAAAA] [-] EMBL CA762243 [TTTTGGGGAGGCTTTCAACTGGAGTGGTAGAGCATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATAGCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCATTGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCAACTGTTAAATCAGTACTTCTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14756#0 GCCACCGCCGCGCGTTGACGGTTAGACGCCACCGCGGGAGGAGAGCCCCTCCCTCCCCGT 60 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CCGCGTCCGCGTCCGCCTCATCTCCGCCGCCCTCTTACTCCCCCTCCCCTTCCTCCACTC 120 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CGTCCACCTCGGAATCGTCGGCGCGACGCCTCCAAACCCCCGCATCGATTCCTCCCTCCC 180 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 ACCTCACCCCACCCTTCCGCCCGCTCGATCCACCGCCGAAGCGGGCGGCGATGGCGACGC 240 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CGTCGTCGTTTTCGTCGGCGAGGAAGAAGGCGCCGAGCCCGCCGAAGCACCGCCACGACG 300 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GCACCTCCGGGCTGCCGTTCGGCATGGACTGGAGCCCGCCCCCGAAGAGATGGGAGGGAA 360 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GGAACACCATATGGCCACATAACCCTCAAACCGGATGGAGTTACTGTGTGATGATTCCTT 420 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CTTGGATCGCTCAGACACCTGAAGCTAGTGCGACTGCTGACAACTTCTTGAAATCCATAG 480 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TTTTTTACAGGATACATGTTGGTATACAATCTCCAGAAGGCATCAGCTCTAGCCACGGAG 540 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TTCTTCGAAGGTTTAGTGACTTTCTAAAGTTATCTTCTGATCTTAAGCAGGAATTTCCCA 600 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGG 660 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TGCTTCTAGAAGAGAGAAGGAACGCTTTGGAGGAGTGGATGCAAAAGCTACTTTCTGACA 720 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TTGAGTTGTCGAGAAGTGCACCTGTTGCTGCTTTTCTTGAGCTGGAAGCTGCTGCACGCT 780 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CATATTACCAAGATTGGAATCAGCGCCCTTCTGAAGTGGGTTCTTCAGCAAAAAGTAGTG 840 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CAGATTCTTCTCCGCGTCCTGATGAACATGGTTCAGGTGTTCTCTCTGAGTCCAGTCAAA 900 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TGAATTCAGCCTTTGCTCATGGTAACGGTCCGACAGGAGCAACTGGTAATGGTATGCTGG 960 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GAGAGTCTATCTTAGATCAGCCCAATGAGCGGGCTAGTAGCATGTCAAATCACAGGAAAA 1020 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 AGAACCATGTCTTTTTGGAACATGGTGTTAGGAATGGTTCCATAGATACTTATAAGGGAG 1080 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TGGTTTCCGAAGAGGATCACGATTCTAACCCTGGCCATGCCAGGAAGGACTCTGCTGAAA 1140 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GTATAGGAAGTGATTTGAGTTCTTTGAGGGGCAGTGAATTATCGGTTCCTGGAGTTAGTA 1200 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GTTCCCTTTGGGATGGTCCTGTGGATCTTCCAAGTGGAATTGATGGACATAGCCAAACAG 1260 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 AACAATTTACAGGTTTAGATATGCAGCTTTTATATGATATGGATGCACAAATCATCCTTC 1320 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CTGCTGATCAAAGGCCGAAGTTGACTAGACTTTTGATCAGCATGGACAGAAGACAGGTGA 1380 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGTGGCTGTCAAAG 1440 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 AATATCTTGCGACAAAGGTCAAAGATTTGGAGGTTGAGTTGGAAGCTACGAAGAAAAAAG 1500 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 ACAAAGAGATTCTACATCAGGCTGTTTTGACCGAAAGAGAGAAAATTACCCAACTTCAAT 1560 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GGGATAAGGATGAGCTCTACAGGAAGTACTCTGAAATGGAGTCAAACCTGAAGATTGAAC 1620 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 AAAATGAGAAAACTCGTGTGCAGTCAGAGAAAACAACTGCTAGCGGTGAAAAAGAAATGT 1680 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TACTGGAAGAGCTAGAAACTAAACGAAAAGAAGTTGAGAGTTTGCAGCAACATATTGGAG 1740 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 AATTCGAGGCAAAGTCTAAAGCAGATATAAAAGTTCTTGTTAAAGAGGTGAAATCTCTTC 1800 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GGAACTCCCAAAAAGAGATGAAGAAAGTGCTGAATCAGTATCATGAGGAGAAGACTGAAT 1860 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TAGAGAGGATTGTTAACAGGGAGAAACAGCGGTCAACACGTGCAAGGTTCTCCCGTGAAA 1920 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 AAATTCTTCACGAATGCAGACTGCTCCGTGAGCGTCTACAGGAATGTACTGCCAAGTTTG 1980 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TTGCAGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATC 2040 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGGCTCAACTTCTGTCAC 2100 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GAGATGATGAACAGGGCTCTTCTGATGATGGTGATAATTCTGATGGTAAATCCTCAGTTA 2160 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CCATGAGCAGTGAAGATGCATATGTTACTGATGAAGAGACAACAAAAATGTTATCTGATC 2220 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TGCTTATTGACAATGCACAACTGAGGTTGCGCTTGAATTCTCTCATCCGTAATGCTGTAA 2280 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 ATACTGCTGTGAAGACGGAGAAAGAAGGTAGTGATGGAACCGTGCCAAAAAAGACGGTGC 2340 consensus_14756#1 ------------------------------------------------------------ consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TTAATTGGTTATTGGACAGATAGAAAAACCAGTATATATTCTTGTGAATTAGCTCTTCTA 2400 consensus_14756#1 -------------------------------------------------TAGCTCTTCTA 11 consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 GTTATGCGGCCTTCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAG 2460 consensus_14756#1 GTTATGCGGCCTTCTCAAAGTTATATGATGAGTATTGTTATAATGTGGGAGTAACAGGAG 71 consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 TGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTAT 2520 consensus_14756#1 TGGAGAAAAAAAAATCAAAATCTTCCTTACATGCAGATCAAGCATGTGGTGGTGTTGTAT 131 consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTC 2580 consensus_14756#1 CTCTTATTTACAAAGATTGATCAAGGATAATATATTTAGGAGGCTTCTGAGCCTGGCCTC 191 consensus_14756#2 ------------------------------------------------------------ consensus_14756#0 CTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTGGTAGA 2640 consensus_14756#1 CTAGCGGGAGAACGGTAGGGCTCATATGGTTTTGGGGAGGCTTGCAACTGGAGTNGTAGA 251 consensus_14756#2 -----------------------------TTTTGGGGAGGCTTTCAACTGGAGTGGTAGA 31 ************** ********** ***** consensus_14756#0 GAACATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATA 2700 consensus_14756#1 GAACATGGGTCCCCTTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATA 311 consensus_14756#2 G--CATGGGTCCCCCTTTTTTGCACCATACTTCAATTTGTAATTGCCGAGCTGATGGATA 89 * *********** ********************************************* consensus_14756#0 GCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCAT 2760 consensus_14756#1 GCTGCATNGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTNCCAGCAGGAAGCATT 371 consensus_14756#2 GCTGCATGGTTGTATCTTTGTACAGATGTTTCAGATGGTGAGTTCCCAGCAGGAAAGCAT 149 ******* ************************************ ********** * consensus_14756#0 TGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAAAAAAAAAAACTGTTAA 2820 consensus_14756#1 TGTACACTATAGTTAAACTCTGGATTA--TCTNCTCACCCT---AGAGTCTCACTGTAAA 426 consensus_14756#2 TGTACACTATAGTTAAACTCTGGATTAATCTTCTTCACCCATAGAGTGCTCAACTGTTAA 209 *************************** * ****** * ***** ** consensus_14756#0 ATCAGTACTTCTTACTCATGCAGTTGCACCTCTTCCAGACTG 2862 consensus_14756#1 AAAA-------------------------------------- 430 consensus_14756#2 ATCAGTACTTCTTAAAAAAAAAAAAAA--------------- 236 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||