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Oryza sativa
cluster # 14757 cluster # 14757       Sequences # 18       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14757#0 length = 939 sequences # 14  
consensus_14757#1 length = 459 sequences # 1  
consensus_14757#2 length = 260 sequences # 1  
consensus_14757#3 length = 172 sequences # 2  

consensusID : consensus_14757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 939
fasta sequence
                              [TCTCAATTCCTTCCTTCTTCGACCCGTCCTCCTCTTCTCTCTCCCTCCTCTTCCCCCCAAATCGCGGATTCCCTCGACGAGAGAGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCACCACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTCAACTGGCTCCGAAGCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAAAACAT-CACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATC-TTGGAGGGCAACGGAGATTCCGGACCATG-TGGGAGCGCTA-TTGCCGTGGAGTTTCTGC-AATCCTATATG-TGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGAT-AAA-GGACCGGGAAGTTTGCTGCTACATGATCTC-TTGCAAGGACTC-TGT-AAACATAGAT-GTTGTCA-TTGATT-GGCTTATC-AAGCACT-CCAGAACA-GCA-AAGTAGGGTTGTGTATGTCTATCA-CTTGATGCGTGCTGATATGAATTCAGTTTGTTTATCTCCA-GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTTTATTATGGACGTGCTGTATCGTTGTTTTTAAAAAAAAAA]

[+] EMBL C26227               [TCTCAATTCCTTCCTTCTTCGACCCGTCCTCCTCTTCTCTCTCCCTCCTCTTCCCCCCAAATCGCGGATTCCCTCGACGAGAGAGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCACCACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTCAACTGGCTCCGAAGCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAAT CTGGGAAAACAT CACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTTGGATCTTTGGAGGGCAACGGAGATTCCGGACCATGTTGGGAGCGCTATTTGCCGTGGAGTTTTTNCAAATCCNATATGTTGGTGGATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF335055             [            CCTTCTTCGACCCGTCCTCCTCTTCTCTCTCCCTCCTCTTCCCCCCAAATCGCGGATTCCCTCGACGAGAGAGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCACCACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTCAACTGGCTCCGAAGCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAAAACAT CACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATC TTGGAGGGCAACGGAGATTCCGGACCATG TGGGAGCGCTA TTGCCGTGGAGTTTCTGC AATCCTATATG TGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCTTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGAT AAAGGGACCGGGAAGTTTGCTGCTACATGATCTC TTGCAAGGACTC TGT  AACATAGAT GTTGTCA TTGATT G                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF329970             [                  TCGACCCGTCCTCCTCTTCTCTCTCCCTCCTCTTCCCCCCAAATCGCGGATTCCCTCGACGAGAGAGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCACCACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTTAACTGGCTCCGAAGCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAAAACAT CACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATC TTGGAGGGCAACGGAGATTCCGGACCATG TGGGAGCGCTA TTGCCGTGGAGTTTCTGC AATCCTATATG TGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGG                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF334689             [             gagtagaaACCCGTCCTCCTCTTCTCTCTCCCTCCTCTTCCCCCCAAATCGCGGATTCCCTCGACGAGAGAGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCACCACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTCAACTGGCTCCGAAGCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAAAACAT CACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATC TTGGAGGGCAACGGAGATTCCGGACCATG TGGGAGCGCTA TTGCCGTGGAGTTTCTGC AATCCTATATG TGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGT                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK111722             [                                 CTTCTCTCTCCCTCCTCTTCCCCCCAAATCGCGGATTCCCTCGACGAGAGAGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCACCACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTCAACTGGCTCCGAAGCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAAAACAT CACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATC TTGGAGGGCAACGGAGATTCCGGACCATG TGGGAGCGCTA TTGCCGTGGAGTTTCTGC AATCCTATATG TGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGAT AAA GGACCGGGAAGTTTGCTGCTACATGATCTC TTGCAAGGACTC TGT AAACATAGAT GTTGTCA TTGATT GGCTCATC AAGCACT CCAGAACA GCA AAGTAGGGTTGTGTATGTCTATCA CTTGATGCGTGCTGATATGAATTCAGTTTGTTTATCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTTTATTATGGACGTGCTGTATCGTT                ]
[+] EMBL AU091530             [                                                                                                                                                                                                                                                  CATCCACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATC TTGGAGGGCAACGGAGATTCCGGACCATG TGGGAGCGCTA TTGCCGTGGAGTTTCTGC AATCCTATATG TGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGAT AAA GGACCGGGAAGTTTGCTGCTACATGATCTC TTGCAAGGACTC TGT AAACATAGAT GTTGTCA TTGATT GGCTTATC AAGCACT CCAGAACA GCA AAGTAGGGTTGTGTATGTCTATCA CTTGATGCGTGCTGATATGAATTCAGTTTGTTTATCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTTTATTATGGACGTGCTGTATCGTTGTTTTTAAAAA     ]
[-] EMBL CF334690             [                                                                                                                                                                                                                                                                                              CATGATTCCAACTGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATC TTGGAGGGCAACGGAGATTCCGGACCATG TGGGAGCGCTA TTGCCGTGGAGTTTCTGC AATCCTATATG TGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGAT AAA GGACCGGGAAGTTTGCTGCTACATGATCTC TTGCAAGGACTC TGT AAACATAGAT GTTGTCA TTGATT GGCTTATC AAGCACT CCAGAACA GCA AAGTAGGGTTGTGTATGTCTATCA CTTGATGCGTGCTGATATGAATTCAGTTTGTTTATCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTTTATTA GGAaaaaa                         ]
[-] EMBL CF329969             [                                                                                                                                                                                                                                                                                                                                                                                                                                            TG TGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGAT AAA GGACCGGGAAGTTTGCTGCTACATGATCTC TTGCAAGGACTC TGT AAACATAGAT GTTGTCA TTGATT GGCTTATC AAGCACT CCAGAACA GCA AAGTAGGGTTGTGTATGTCTATCA CTTGATGCGTGCTGATATGAATTCAGTTTGTTTATCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTTTATTATGGACGTGCTGTATCGTTGTTTTTAATCAAAAA ]
[+] EMBL BQ906817             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAAC AAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGAT AAA GGACCGGGAAGTTTGCTGCTACATGATCTC TTGCAAGGACTC TGT AAACATAGAT GTTGTCA TTGATT GGCTTATC AAGCACT CCAGAACA GCA AAGTAGGGTTGTGTATGTCTATCA CTTGATGCGTGCTGATATGAATTCAGTTTGTTTATCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTTTtaaaaa                                ]
[+] EMBL BI809209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGATAAAA GGACC GGAAGTTTGCTGCTACATGATCTCTTTGCAAGGACTCTTGTGAAACATAGATGGTTGTCACTTGATTGGGCTTATCAAAGCACTCCCAGGACACGCACAAGTAGGGTTGTGTATGTCTATCACCTTGATGCGTGCTGATATGAATTCCGTTTGTTTATCTCCACGTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTC TTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTTTATTATGGACGTGCTGTATCGTTGTTTTTAAAAAAAAAA]
[-] EMBL BU673459             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTA                                            ]
[-] EMBL BU673039             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTA                                            ]
[-] EMBL CB965335             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTA                                            ]
[-] EMBL CB966900             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCTCCA GTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATC AATCCTGTATTTCATGT AATTCCTTGAATATTTTATTA                                            ]


>consensus_14757#0 TCTCAATTCCTTCCTTCTTCGACCCGTCCTCCTCTTCTCTCTCCCTCCTCTTCCCCCCAA ATCGCGGATTCCCTCGACGAGAGAGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCAC CACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTCAACTGGCTCCG AAGCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAA AACATCACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGT AGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATCTTGG AGGGCAACGGAGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGA CCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGA CAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGATAAA GGACCGGGAAGTTTGCTGCTACATGATCTCTTGCAAGGACTCTGTAAACATAGATGTTGT CATTGATTGGCTTATCAAGCACTCCAGAACAGCAAAGTAGGGTTGTGTATGTCTATCACT TGATGCGTGCTGATATGAATTCAGTTTGTTTATCTCCAGTTTTATGGTCCAAAAGTTAAA AAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTC AAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCTT TATTATGGACGTGCTGTATCGTTGTTTTTAAAAAAAAAA



consensusID : consensus_14757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence
                              [TTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTTTTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTTATAAAGGACCGGGAAGTTTGCTGCTACATGATTTTTTGCAAGGACTCTGTAAACATAAATGTTGTCATTGATTGGCTTATCAAGCCCTCCAGAACAGCAAAGTAGGGTTGTGTATGTTTATCCCTTGATGGGGGGTGATATGAATTCAGTTTGTTTATTTCCCGTTTTATGGTCCCAAAGTTAAAAAGTGACTCCCCTGTAATCTATGGTTTTTCGTTGGGGTCCCTGTCCTCCAGTATGGTGTCAAAAACTTGAGCGTCAAATCCAGTATTTCATGTAAATTCCCTGAATATTTTATTATTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF335054             [TTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTTTTTGGCAACAAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTTATAAAGGACCGGGAAGTTTGCTGCTACATGATTTTTTGCAAGGACTCTGTAAACATAAATGTTGTCATTGATTGGCTTATCAAGCCCTCCAGAACAGCAAAGTAGGGTTGTGTATGTTTATCCCTTGATGGGGGGTGATATGAATTCAGTTTGTTTATTTCCCGTTTTATGGTCCCAAAGTTAAAAAGTGACTCCCCTGTAATCTATGGTTTTTCGTTGGGGTCCCTGTCCTCCAGTATGGTGTCAAAAACTTGAGCGTCAAATCCAGTATTTCATGTAAATTCCCTGAATATTTTATTATTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14757#1 TTGCATGACCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTTTTTGGCAAC AAAATTGACAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAA TTTATAAAGGACCGGGAAGTTTGCTGCTACATGATTTTTTGCAAGGACTCTGTAAACATA AATGTTGTCATTGATTGGCTTATCAAGCCCTCCAGAACAGCAAAGTAGGGTTGTGTATGT TTATCCCTTGATGGGGGGTGATATGAATTCAGTTTGTTTATTTCCCGTTTTATGGTCCCA AAGTTAAAAAGTGACTCCCCTGTAATCTATGGTTTTTCGTTGGGGTCCCTGTCCTCCAGT ATGGTGTCAAAAACTTGAGCGTCAAATCCAGTATTTCATGTAAATTCCCTGAATATTTTA TTATTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14757#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence
                              [TGTGTATGTCTATCACTTGATGCGCGCTGATATGAATTCAGTTTGTTTATCTCCAGTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATTTTTTCCTGTATTTCATGTAAATTCCTTGAATATTTTATTAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF331968             [TGTGTATGTCTATCACTTGATGCGCGCTGATATGAATTCAGTTTGTTTATCTCCAGTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATTTTTTCCTGTATTTCATGTAAATTCCTTGAATATTTTATTAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14757#2 TGTGTATGTCTATCACTTGATGCGCGCTGATATGAATTCAGTTTGTTTATCTCCAGTTTT ATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTG TCCTACAGTATGGTGTCAAATACTTGAGCATTTTTTCCTGTATTTCATGTAAATTCCTTG AATATTTTATTAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14757#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 172
fasta sequence
                              [AATTGGCCTCGAGGCTAGAATCAGTT-GTTTATCTCCAGTTTTATGGTCCAAAAGTTAAAAAGTGACTACC-TGTAATCTATGGTTTCTCGATGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATT]

[+] EMBL BU673886             [ ATTGGCCTCGAGGCTAGAATCAGTT GTTTATCTCCAGTTTTATGGTCCAAAAGTTAAAAAGTGACTACC TGTAATCTATGGTTTCTCGATGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATT]
[+] EMBL BU673837             [atTTGGCCTCGAGGC AGAATCAGTTGGTTTATCTCCAGTTTTATGGTCCAAAAGTTAAAAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGTCAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATT]


>consensus_14757#3 AATTGGCCTCGAGGCTAGAATCAGTTGTTTATCTCCAGTTTTATGGTCCAAAAGTTAAAA AGTGACTACCTGTAATCTATGGTTTCTCGATGGTGTCACTGTCCTACAGTATGGTGTCAA ATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      TCTCAATTCCTTCCTTCTTCGACCCGTCCTCCTCTTCTCTCTCCCTCCTCTTCCCCCCAA 60
consensus_14757#1      ------------------------------------------------------------
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      ATCGCGGATTCCCTCGACGAGAGAGATCCGGGCGCGGCTGGCGGCGACGGTCACCACCAC 120
consensus_14757#1      ------------------------------------------------------------
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      CACCACCCCGACGGCGGCGAACGGCATGGGGCTCTGGGACTCGCTCCTCAACTGGCTCCG 180
consensus_14757#1      ------------------------------------------------------------
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      AAGCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAA 240
consensus_14757#1      ------------------------------------------------------------
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      AACATCACTAGTTAATGCTGTTGCTACAGGTGGCTACAGCGAAGACATGATTCCAACTGT 300
consensus_14757#1      ------------------------------------------------------------
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      AGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATCTTGG 360
consensus_14757#1      ------------------------------------------------------------
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      AGGGCAACGGAGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCT 420
consensus_14757#1      ------------------------------------------------------------
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      ATATGTGGTGGATGCTGCTGACCGGGATAGCATTCCGATAGCTAAAAGTGAATTGCATGA 480
consensus_14757#1      ----------------------------------------------------TTGCATGA 8
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      CCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTCCTTGGCAACAAAATTGA 540
consensus_14757#1      CCTGCTGACAAAACAATCTTTAGCTGGGATTCCTTTACTAGTTTTTGGCAACAAAATTGA 68
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      CAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTGATAAA 600
consensus_14757#1      CAAGTCAGAAGCTGTTTCAAAGCAAGCGTTGGTTGATCAACTAGGCCTGGAATTTATAAA 128
                                                                                   

consensus_14757#2      ------------------------------------------------------------
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      GGACCGGGAAGTTTGCTGCTACATGATCTCTTGCAAGGACTCTGTAAACATAGATGTTGT 660
consensus_14757#1      GGACCGGGAAGTTTGCTGCTACATGATTTTTTGCAAGGACTCTGTAAACATAAATGTTGT 188
                                                                                   

consensus_14757#2      -------------------------------------------TGTGTATGTCTATCACT 17
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      CATTGATTGGCTTATCAAGCACTCCAGAACAGCAAAGTAGGGTTGTGTATGTCTATCACT 720
consensus_14757#1      CATTGATTGGCTTATCAAGCCCTCCAGAACAGCAAAGTAGGGTTGTGTATGTTTATCCCT 248
                                                                                   

consensus_14757#2      TGATGCGCGCTGATA-TGAATTCAGTTTGTTTATCTCCAGTTTTATGGTCCAAAAGTTAA 76
consensus_14757#3      -AATTGGCCTCGAGGCTAGAATCAGTT-GTTTATCTCCAGTTTTATGGTCCAAAAGTTAA 58
consensus_14757#0      TGATGCGTGCTGATA-TGAATTCAGTTTGTTTATCTCCAGTTTTATGGTCCAAAAGTTAA 779
consensus_14757#1      TGATGGGGGGTGATA-TGAATTCAGTTTGTTTATTTCCCGTTTTATGGTCCCAAAGTTAA 307
                         **  *    **   *  * ****** ****** *** ************ ********

consensus_14757#2      AAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGT 136
consensus_14757#3      AAAGTGACTACCT-GTAATCTATGGTTTCTCGATGGTGTCACTGTCCTACAGTATGGTGT 117
consensus_14757#0      AAAGTGACTACCTTGTAATCTATGGTTTCTCGTTGGTGTCACTGTCCTACAGTATGGTGT 839
consensus_14757#1      AAAGTGACTCCCCTGTAATCTATGGTTTTTCGTTGGGGTCCCTGTCCTCCAGTATGGTGT 367
                       ********* **  ************** *** *** *** ******* ***********

consensus_14757#2      CAAATACTTGAGCATTTTTTCCTGTATTTCATGTAAATTCCTTGAATATTTTATTAAATT 196
consensus_14757#3      CAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATT----- 172
consensus_14757#0      CAAATACTTGAGCATCAAATCCTGTATTTCATGTAAATTCCTTGAATATTTTATTATTCT 899
consensus_14757#1      CAAAAACTTGAGCGTCAAATCCAGTATTTCATGTAAATTCCCTGAATATTTTATTATTTT 427
                       **** ******** *    *** ****************** *************     

consensus_14757#2      TTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 256
consensus_14757#3      ------------------------------------------------------------
consensus_14757#0      TTATTATGGACGTGCTGTATCGTTGTTTTTAAAAAAAAAA-------------------- 939
consensus_14757#1      TTATTAAAAAAAAAAAAAAAAA--------AAAAAAAAAA-------------------- 459
                                                                                   

consensus_14757#2      AAAA 260
consensus_14757#3      ----
consensus_14757#0      ----
consensus_14757#1      ----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)