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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 2004 fasta sequence
[AGATGATGGCGGCGGCAATGGGGTCGCCATGGCTGCGCATCAGGCTGCTCCCGGAGGTGCCGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGC-CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGGTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAAGCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTCCAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGTGGCTGAGCTTTTGAAGGATGGCATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA-GGAGCA-AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT-AATACT-CCACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT-TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGATGCTGCTTGTCTTTTTCAGTTGCTGAATCCAAATATTTCTGAGAACAGTAGAACATAGCCTGAATTCTCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK099931 [AGATGATGGCGGCGGCAATGGGGTCGCCATGGCTGCGCATCAGGCTGCTCCCGGAGGTGCCGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGC CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGGTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAAGCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTCCAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGCGGCTGAGCTTTTGAAGGATGGCATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGATGCTGCTT ]
[+] EMBL C27100 [ TGGCGGCGGCAATGGGGTCGCCATGGCTGCGCATCAGGCTGCTCTCGANGGTGCNGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTACGCNGCTCCNNCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTNCGCTTCG GCNCGTCGCCGACGGGCAACCTCCACGTCGGNGGCGCCCGAACCG GCTCTTNAACTACCTCTTCGCGCGGTCCAAGGGGGGAAAGTTCGTNCTCCGNATCGAGGACACCGACCTCGAGAGGTTCACCAAGAAGTNCGAGGAGGCCGTGCTCAGTAACCTCG ]
[+] EMBL CB656780 [ GGTCGCCATGGCTGCGCATCAGGCTGCTCCCGGAGGTGCCGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGC CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGGTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAA ]
[+] EMBL CB640860 [ CAGGCTGCTCCCGGAGGTGCCGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGC CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGTCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGC ]
[+] EMBL CB654992 [ gCGCCTCCGCCTCGGCGTCACCGGACGGCCCCTGCGGCCCGGTGCGGGTCCGCTTCGCGC CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGGTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCGAACACATTACGGCAGGCTCTTATTTATAAAGC ]
[-] EMBL CB618155 [ ATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTCCAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGTGGCTGAGCTTTTGAAGGATGGCATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCGCTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCCATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCCCTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAGAGGTTACGAGGTGATGCTGCTTGTCTTTTT ]
[-] EMBL CB618224 [ TGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTCCAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGTGGCTGAGCTTTTGAAGGATGGCATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCGCTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCCATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCCCTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAGAGGTTACGAGGTGATGCTGCTTGTCTTTTT ]
[-] EMBL CB654993 [ ATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTGGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCCCTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTCCAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGGGGTGATGCTGCTTGTCTTTT ]
[-] EMBL CB683559 [ GATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTTTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCCCTTAAAAGAAAGGGAAAGTCCCTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCCGACATGGGCGGCCCCGTAGTCCTCATACACAAAGCCGGCCCCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCCGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGGGAGTTTTTGTTTTCTGT AATACT CCCCTATAAAGCATAGGATATGTTCCATTTTACTCCCCCTTTCTCCAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTCCCTGGAAAGGCTCCT ]
[-] EMBL CB636200 [ AAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGAAAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGAAAAAGCTT TCTTTTT ]
[-] EMBL CB618156 [ GAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTCTATGCCGGTCCGTGTAATGCTGAATGGCAAGCTTCATGGGCCGGCCATGGGCGGCACCGTAGTCCTCATTCACAAAGCCGGCACCTGTGGAGCGGTCACTCTGCAATCCGGTTTCGTAAATCTCGTCGCGAGGTTCAGAATCCTGAAGGAGGGGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAATCTGCCGTTCCTGCTTCTCCATAGGCCGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCACTATAAAGCCTCGGATATGTTCCATTTTGCTGCCCACTTCCACAGTGGGGAGGAACCGATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATCTTGCTTATCTGTTCTGTAATCGCCGATTTGAATTGGATCGGATGGCAGAGGTTACGAGGTGATGCCGCTTGTCTTTTT ]
[+] EMBL BI794982 [ CGACGAGAGGTTCAGAATCCTGAAGGA GTGGAGTGGGAGTCACTGGTACACGGAGCACAGAGTCCCCCGCTGAAACTGCCGTTCCTGCTTCTCCATAGGCTGCAAGATTCAGATCCATCAGGGAGAGTTTTTGTTTTCTGTGAATACTCCCACTATAAAGCATAGGATATGTTCCCTTTTACTACCCCTTTCTACCGTTGTGAGGAAACTATAGTTTCGGTGTTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGTCAGAGGTTACGAGGTGATGC ]
[+] EMBL CA765755 [ TGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGATGCTGCTTGTCTTTTTCAGTTGCTGAATCCAAATATTTCTGAGAACAGTAGAACATAGCCTGAATTCTCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU108767 [ AAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGATGCTGCTTGTCTTTTTNAGTTGNTGAATCCAAATATTTCTGAGAACAGTAGAACATAaaaaaaa ]
consensusID : consensus_14758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 813 fasta sequence
[TGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTG]
[+] EMBL CB618223 [TGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTG]
[+] EMBL CB618185 [TGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTG]
[+] EMBL CB618154 [TGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACA ]
consensusID : consensus_14758#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence
[CAGCCCTAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGTTTTATAAAGGTCAGTTGGAACTTATACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAAGCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATC]
[+] EMBL CB683090 [CAGCCCTAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGTTTTATAAAGGTCAGTTGGAACTTATACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAAGCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14758#0 AGATGATGGCGGCGGCAATGGGGTCGCCATGGCTGCGCATCAGGCTGCTCCCGGAGGTGC 60
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCG 120
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGCCGTCGCCGA 180
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGT 240
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGA 300
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 AGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTC 360
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAAC 420
consensus_14758#2 --------------------------------CAGCCCTAGCGCAATTCGATGTACAAAC 28
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 AGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGG 480
consensus_14758#2 AGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGG 88
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 AACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCA 540
consensus_14758#2 AACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCA 148
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 AGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACA 600
consensus_14758#2 AGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACA 208
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTG 660
consensus_14758#2 CTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTG 268
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 AG----------GTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGC 710
consensus_14758#2 AGTTTTATAAAGGTCAGTTGGAACTTATACACGCTTGGTGATTTCGTGATTATGAGAAGC 328
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 AATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCT 770
consensus_14758#2 AATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCT 388
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAA 830
consensus_14758#2 CATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAA 448
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 GCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGA 890
consensus_14758#2 GCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGA 508
consensus_14758#1 -----TGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGA 55
***** ** **********************************************
consensus_14758#0 AGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTAT 950
consensus_14758#2 AGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTAT 568
consensus_14758#1 AGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTAT 115
************************************************************
consensus_14758#0 TTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAAT 1010
consensus_14758#2 TTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAAT 628
consensus_14758#1 TTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAAT 175
************************************************************
consensus_14758#0 GAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGT 1070
consensus_14758#2 GAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGT 688
consensus_14758#1 GAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGT 235
************************************************************
consensus_14758#0 GGAGCAGTCTTTGATGCTGTAAAATTAAAATG-GATGAATGGACAACATCTAAGATCATT 1129
consensus_14758#2 GGAGCAGTCTTTGATGCTGTAAAATTAAAATG-GATGAATGGACAACATCTAAGATCATT 747
consensus_14758#1 GGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCT 295
***************************** * *** * * * * *
consensus_14758#0 TCCCCCTGA--TGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTC 1187
consensus_14758#2 TCCCCCTGA--TGTACTCATC--------------------------------------- 766
consensus_14758#1 TCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAG 355
** *** * * ****
consensus_14758#0 CAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGTGGCTGAGCTTTTGAAGGATGGCATCGAT 1247
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 TTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGT 415
consensus_14758#0 TTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCA-TGCTAC 1306
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 CTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCC 475
consensus_14758#0 ATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGG 1366
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 CTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTG 535
consensus_14758#0 ACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGG 1426
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ATATACTATAAGGTTTG-TAGCAATAAGGTTTGT-AGCAACAAAATTATAACCATATGAA 593
consensus_14758#0 TTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTT 1486
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTAT 653
consensus_14758#0 TATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGT 1546
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ACTAATTGTTGGTATATT-TTAGAAGGTGAATCTTAAAAACCAATC-----TAGTACTGG 707
consensus_14758#0 AGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAA 1606
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAG 767
consensus_14758#0 TCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACAGGAGCA 1666
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 AATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTG-------------- 813
consensus_14758#0 AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAAT 1726
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CAGGGAGAGTTTTTGTTTTCTGTAATACTCCACTATAAAGCATAGGATATGTTCCATTTT 1786
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 ACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGTTTTCTGTAGTTAATAAAGC 1846
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 GGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTA 1906
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 CGAGGTGATGCTGCTTGTCTTTTTCAGTTGCTGAATCCAAATATTTCTGAGAACAGTAGA 1966
consensus_14758#2 ------------------------------------------------------------
consensus_14758#1 ------------------------------------------------------------
consensus_14758#0 ACATAGCCTGAATTCTCTAAAAAAAAAAAAAAAAAAAA 2004
consensus_14758#2 --------------------------------------
consensus_14758#1 --------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||