|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1174 fasta sequence
[GGCTTGGGTTGTGGTTGATAGCAAGATAAACCCAGACCGCATTGAGTGCTATGCTGAGAGGACTGCAAAAGGCAATGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA-GGA-GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA-TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA-TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT-ATGAT-G-CCAAAACTATTATTGGAGGCACAAATAGC-TTGTGGACCCT-GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT-GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA-CCGGTTAACCTGAGTGCTTGTTTAC-AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA-CA-AGATGACAATATGTTTGTGCTCTAAAAAAAAAATCCATGAATACTGATTGCGGAATCAAAAAAAAAAAA]
[+] EMBL CF310719 [GGCTTGGGTTGTGGTTGATAGCAAGATAAACCCAGACCGCATTGAGTGCTATGCTGAGAGGACTGCAAAAGGCAATGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA GGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAAC ]
[+] EMBL OSR1911A [ TGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGNAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGNATTGCATGATACATCCCTCAGAATGGCTGCNAAAGGTGTAATTAAGGAAGTTGTGGGCTTGGAAGNATCACGGTCTTTCCTCTATAAGAGATTACGGA GGN GGGTCTCTGAGGATGTTCTTGCAAAgg ]
[+] EMBL OSR1958A [ TGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGAGGGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCCAGGAATGGTATTCAGCTTCACATGCAGCTTAATTGGGATTATGNCGGTGCT ]
[+] EMBL OSR25581A [ TGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGNTCTTTCTTCTATAAGAGATTACGGA GGAGGGATCTCTGAGGATG ]
[-] EMBL CB629345 [ CAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA GGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTC ]
[+] EMBL AK059261 [ AAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA GGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA AGATGACAATATGTTTGTGCTCTAAAAAAAAAA ]
[-] EMBL CB634342 [ ACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA GGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGGGAACACA CA AGATGACAATATGTTTGTGCTCTA ]
[+] EMBL BP184574 [ AGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTT ACACA CA Aa ]
[-] EMBL CB642142 [ TAGAGCTGTAGCAGGTGAGCAGTTTTCCCCCCACCCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTCCAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCCCAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCCCAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTTTGATGATTCATGATCCCGTCAGTTGGCAAGAACC CCGGTTACCCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATTTACTATCATCTGTTAGACGCTGTAATTAGTGAGTTTCCGCGGATCCCCAGTATACGGTTGAGCTGTTGATTCAATTTTGGCCCCGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTACCCCC CA AGATGCCAATATGT ]
[+] EMBL BI806157 [ GAT GATAA CCTG AAACTAC AGGATTATA TC ATATC TAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTTGCAAG CCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CC AAACTATTATTGGAGGCAC AATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AATGGTCCTTTATGAC ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA Aaaaaaaaa ]
[-] EMBL CF306370 [ AGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA AGATGACAATATGTTTGTGCTCTACTGCTATTGTCCATGAATACTGATTGCGGAATCAAAAAAAAAAAA]
[+] EMBL BI812060 [ AGATGGATCCCTCTAGAAGAGCTC ACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGATCG CCCAAACTATTATTGGAGCCAC AATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACCATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCCCAGTATACGGTTGAGCTGTTGATTCAATTTTGGACCCGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACACCACAGATGACCATATGTTTGTGCTCTAAAAAAAAAA ]
[+] EMBL CB685486 [ CTCCCCTTGATGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATCCC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA AGATGACAATATGTTTGTG ]
[+] EMBL BI803380 [ TGAAGAAATCAGGAAGCTCCTTGGTTGAATCAT ATGAT CCCAAACTATTATTGGAGCCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGTGGCAAGTCTGATGATTCATGATACCGTCAGTT GCAAGAACACCCGGTTAACCTGAGTGCTTGTTTACAAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA AGATGACAATATGTTTGTGCTCTACTGCTATTGTCCATGAATCCTGATTGCGGAATCAAAAAAAAAA ]
[+] EMBL BI802505 [ TTGGTTGAATCATGATGATCGCCCTGGACTATTATTGGAGGCACAGATAGCTTTGTGGACCCTGGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGAC ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACCCGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA AA A ]
consensusID : consensus_14760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 908 fasta sequence
[GGACGAGACAAGGGGGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAGGAGATTACGGAGGAGGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCACAAATAGCTTGTGGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGGTAGTTCTGNCAGATGAAAGTGCAAGTCTGATGATTCATGATACCCGTCAGNTGGCAAGAACACCGGNTAACCTGAGTGCTTGGTTACAAATGGTCCNTTATGACAATCGGTGGTTCGCGCTAGNTCCGGGATCTACTATCATCTGGTANACGCTGGAATTAGNGAGTCTNCGCGGGTNCACAGGATACGGGTGGAGCTGGTGATTCAATTTTGGCACGAATAAATGATTTTGGAGGCATAAAAGCGCCTGGATG]
[+] EMBL CA764193 [GGACGAGACAAGGGGGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAGGAGATTACGGAGGAGGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCACAAATAGCTTGTGGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGGTAGTTCTGNCAGATGAAAGTGCAAGTCTGATGATTCATGATACCCGTCAGNTGGCAAGAACACCGGNTAACCTGAGTGCTTGGTTACAAATGGTCCNTTATGACAATCGGTGGTTCGCGCTAGNTCCGGGATCTACTATCATCTGGTANACGCTGGAATTAGNGAGTCTNCGCGGGTNCACAGGATACGGGTGGAGCTGGTGATTCAATTTTGGCACGAATAAATGATTTTGGAGGCATAAAAGCGCCTGGATG]
consensusID : consensus_14760#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCCCAAATAGCTTGTGGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGTGCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACACCGGTTAACCTGAGTGCTTGTTTACAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATTTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCCCAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCAAAAAAAAAAAAAAAAA]
[-] EMBL CA759584 [GTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCCCAAATAGCTTGTGGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGTGCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACACCGGTTAACCTGAGTGCTTGTTTACAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATTTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCCCAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCAAAAAAAAAAAAAAAAA]
consensusID : consensus_14760#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGGTTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACACAAGATGACAATATGTTTGTGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF332883 [ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGGTTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACACAAGATGACAATATGTTTGTGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14760#1 ------------------------------------------------------------
consensus_14760#2 ------------------------------------------------------------
consensus_14760#0 GGCTTGGGTTGTGGTTGATAGCAAGATAAACCCAGACCGCATTGAGTGCTATGCTGAGAG 60
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 ------------------------------------------------------------
consensus_14760#2 ------------------------------------------------------------
consensus_14760#0 GACTGCAAAAGGCAATGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGA 120
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 ----------------------------------------------GGACGAGACAAGGG 14
consensus_14760#2 ------------------------------------------------------------
consensus_14760#0 GGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACT 180
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 GGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGC 74
consensus_14760#2 ------------------------------------------------------------
consensus_14760#0 CGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGC 240
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 TCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCA 134
consensus_14760#2 ------------------------------------------------------------
consensus_14760#0 TCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCA 300
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 TGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGA 194
consensus_14760#2 ------------------------------------------------------------
consensus_14760#0 TGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGA 360
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 ATCACGATCTTTCTTCTATAGGAGATTACGGAGGAGGATCTCTGAGGATGTTCTTGCAAA 254
consensus_14760#2 -------------------------------------------------GTTCTTGCAAA 11
consensus_14760#0 ATCACGATCTTTCTTCTATAAGAGATTACGGAGGAGGATCTCTGAGGATGTTCTTGCAAA 420
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 AGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAA 314
consensus_14760#2 AGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAA 71
consensus_14760#0 AGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAA 480
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 GAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTG 374
consensus_14760#2 GAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTG 131
consensus_14760#0 GAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTG 540
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 GATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATC 434
consensus_14760#2 GATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATC 191
consensus_14760#0 GATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATC 600
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 CCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCT 494
consensus_14760#2 CCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCT 251
consensus_14760#0 CCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCT 660
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 TTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAG 554
consensus_14760#2 TTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAG 311
consensus_14760#0 TTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAG 720
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 GAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCACAAATAGCTTGT 614
consensus_14760#2 GAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCCCAAATAGCTTGT 371
consensus_14760#0 GAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCACAAATAGCTTGT 780
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 GGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGGTAGTTCTGNCAGATGAAAGT 674
consensus_14760#2 GGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT 431
consensus_14760#0 GGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT 840
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 GCAAGTCTGATGATTCATGATACCCGTCAGNTGGCAAGAACACCGGNTAACCTGAGTGCT 734
consensus_14760#2 GCAAGTCTGATGATTCATGATACC-GTCAGTTGGCAAGAACACCGGTTAACCTGAGTGCT 490
consensus_14760#0 GCAAGTCTGATGATTCATGATACC-GTCAGTTGGCAAGAACACCGGTTAACCTGAGTGCT 899
consensus_14760#3 ------------------------------------------------------------
consensus_14760#1 TGGTTACAAATGGTCCNTTATGACAATCGGTGGTTCGCGCTAGNTCCGGGATCTACTATC 794
consensus_14760#2 TGTTTACAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATC 550
consensus_14760#0 TGTTTACAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATC 959
consensus_14760#3 -------------------------ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATC 35
**** ** ********** **** ***********
consensus_14760#1 ATCTGGTANACGCTGGAATTAGNGAGTCTNCGCGGGTNCACAGGATACGGGTGGAGCTGG 854
consensus_14760#2 ATTTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCCCAGTATACGGTTG-AGCTGT 609
consensus_14760#0 ATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTG-AGCTGT 1018
consensus_14760#3 ATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTG-AGCTGT 94
** ** ** ****** ****** ****** ***** * * *** ****** ** *****
consensus_14760#1 TGATTCAATTTTGG-CACGAATAA-ATGATTTTGGAGGCATAAAAGCGCCTGGATG---- 908
consensus_14760#2 TGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCAAAAAAAAAAAAAAAAA---- 665
consensus_14760#0 TGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAA 1078
consensus_14760#3 TGATTCAATTTTGGACACGAATAATATGGTTTTGTAGGCATAAATGCGTCTGTATGTGAA 154
************** ********* *** ***** ***** *** *
consensus_14760#1 ------------------------------------------------------------
consensus_14760#2 ------------------------------------------------------------
consensus_14760#0 ATAAATTGTCTGTTGAGTTAACACACAAGATGACAATATGTTTGTGCTCTAAAAAAAAAA 1138
consensus_14760#3 ATAAATTGTCTGTTGAGTTAACACACAAGATGACAATATGTTTGTGCTCTAAAAAAAAAA 214
consensus_14760#1 ------------------------------------
consensus_14760#2 ------------------------------------
consensus_14760#0 TCCATGAATACTGATTGCGGAATCAAAAAAAAAAAA 1174
consensus_14760#3 AAAAAAAAAAAAAAAAAAA----------------- 233
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||