cluster # 1477

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Oryza sativa
cluster # 1477 cluster # 1477 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1477#0 length = 604 sequences # 1

consensus_1477#1 length = 201 sequences # 1

consensusID : consensus_1477#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [CTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCGCGCTCATCGTCCCCGCAAACCCAAACCCTACTCCAAACCCCACCTCCTCCCTCCGTCCCCCATCGCGTGCCGCCTCCAGTGTGCTCCGCTTCCCCCGCCGCGACCGCGCTCGAACCCATCTCACTGCCGCGTTTGGGAGGGGATCACCCGCGGCGGCGGCCGAGCGCGGCGGGAAGGACTACTACGCTACGCTGAACCTCCGCCGCGACGCCACCCTGCAGGAGGTCAAGACGGCCTACCGTACCCTAGCGCGCAAGGTGCTGCACCTGCACTCCCCCCCCTTCACTCTCCGATGTCATGTCCCCTCGAAGTGTTAGATTGTGTGATACTGCTAGTTTTAGTGTATGCGCAGTTCAATTTATCTGGAATTGAACCGGTAGCGTGATATAGTTGCGATTGAGTTGGGCCACTTGCATTATCTGCTTGTTCCAACCTGGGTAATTATCGTCTTCTGCATCCCCTGCACAATCCTGGTTACAGTATATGTTAAAATGAGTAAAATGACTATGTAATTCTTGGTAATGTGGATCATGGAAATCGCACG]

[+] EMBL AK109454             [CTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCGCGCTCATCGTCCCCGCAAACCCAAACCCTACTCCAAACCCCACCTCCTCCCTCCGTCCCCCATCGCGTGCCGCCTCCAGTGTGCTCCGCTTCCCCCGCCGCGACCGCGCTCGAACCCATCTCACTGCCGCGTTTGGGAGGGGATCACCCGCGGCGGCGGCCGAGCGCGGCGGGAAGGACTACTACGCTACGCTGAACCTCCGCCGCGACGCCACCCTGCAGGAGGTCAAGACGGCCTACCGTACCCTAGCGCGCAAGGTGCTGCACCTGCACTCCCCCCCCTTCACTCTCCGATGTCATGTCCCCTCGAAGTGTTAGATTGTGTGATACTGCTAGTTTTAGTGTATGCGCAGTTCAATTTATCTGGAATTGAACCGGTAGCGTGATATAGTTGCGATTGAGTTGGGCCACTTGCATTATCTGCTTGTTCCAACCTGGGTAATTATCGTCTTCTGCATCCCCTGCACAATCCTGGTTACAGTATATGTTAAAATGAGTAAAATGACTATGTAATTCTTGGTAATGTGGATCATGGAAATCGCACG]




>consensus_1477#0
CTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCG
CGCTCATCGTCCCCGCAAACCCAAACCCTACTCCAAACCCCACCTCCTCCCTCCGTCCCC
CATCGCGTGCCGCCTCCAGTGTGCTCCGCTTCCCCCGCCGCGACCGCGCTCGAACCCATC
TCACTGCCGCGTTTGGGAGGGGATCACCCGCGGCGGCGGCCGAGCGCGGCGGGAAGGACT
ACTACGCTACGCTGAACCTCCGCCGCGACGCCACCCTGCAGGAGGTCAAGACGGCCTACC
GTACCCTAGCGCGCAAGGTGCTGCACCTGCACTCCCCCCCCTTCACTCTCCGATGTCATG
TCCCCTCGAAGTGTTAGATTGTGTGATACTGCTAGTTTTAGTGTATGCGCAGTTCAATTT
ATCTGGAATTGAACCGGTAGCGTGATATAGTTGCGATTGAGTTGGGCCACTTGCATTATC
TGCTTGTTCCAACCTGGGTAATTATCGTCTTCTGCATCCCCTGCACAATCCTGGTTACAG
TATATGTTAAAATGAGTAAAATGACTATGTAATTCTTGGTAATGTGGATCATGGAAATCG
CACG

consensusID : consensus_1477#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [CTCTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCGNGTTCATCGTCCCCGCAAACCCAAANCCTACTTCAAANCCCAACTTCTTCNTCCGTNCCCCATNGNGTGCCGCTTCCAGTGTGCTCCGTTTCCCCGNCGGGACCGGGGTTGGAAACCCATTTTTAATTGCGGGGTTTTG]

[+] EMBL OSS1513A             [CTCTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCGNGTTCATCGTCCCCGCAAACCCAAANCCTACTTCAAANCCCAACTTCTTCNTCCGTNCCCCATNGNGTGCCGCTTCCAGTGTGCTCCGTTTCCCCGNCGGGACCGGGGTTGGAAACCCATTTTTAATTGCGGGGTTTTG]




>consensus_1477#1
CTCTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGC
CGNGTTCATCGTCCCCGCAAACCCAAANCCTACTTCAAANCCCAACTTCTTCNTCCGTNC
CCCATNGNGTGCCGCTTCCAGTGTGCTCCGTTTCCCCGNCGGGACCGGGGTTGGAAACCC
ATTTTTAATTGCGGGGTTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1477#0      --CTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGC 58
consensus_1477#1      CTCTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGC 60
                        **********************************************************

consensus_1477#0      CGCGCTCATCGTCCCCGCAAACCCAAACCCTACTCCAAACCCCACCTCCTCCCTCCGTCC 118
consensus_1477#1      CGNGTTCATCGTCCCCGCAAACCCAAANCCTACTTCAAANCCCAACTTCTTCNTCCGTNC 120
                      ** * ********************** ****** **** **** ** ** * ***** *

consensus_1477#0      CCCATCGCGTGCCGCCTCCAGTGTGCTCCGCTTCCCCCGCCGCGACCGCGCTCG--AACC 176
consensus_1477#1      CCCATNGNGTGCCGCTTCCAGTGTGCTCCGTTTCCCC-GNCGGGACCGGGGTTGGAAACC 179
                      ***** * ******* ************** ****** * ** ***** * * *  ****

consensus_1477#0      CATCTC--ACTGCCGCGTTTGGGAGGGGATCACCCGCGGCGGCGGCCGAGCGCGGCGGGA 234
consensus_1477#1      CATTTTTAATTGCGGGGTTTTG-------------------------------------- 201
                      *** *   * *** * **** *                                      

consensus_1477#0      AGGACTACTACGCTACGCTGAACCTCCGCCGCGACGCCACCCTGCAGGAGGTCAAGACGG 294
consensus_1477#1      ------------------------------------------------------------
                                                                                  

consensus_1477#0      CCTACCGTACCCTAGCGCGCAAGGTGCTGCACCTGCACTCCCCCCCCTTCACTCTCCGAT 354
consensus_1477#1      ------------------------------------------------------------
                                                                                  

consensus_1477#0      GTCATGTCCCCTCGAAGTGTTAGATTGTGTGATACTGCTAGTTTTAGTGTATGCGCAGTT 414
consensus_1477#1      ------------------------------------------------------------
                                                                                  

consensus_1477#0      CAATTTATCTGGAATTGAACCGGTAGCGTGATATAGTTGCGATTGAGTTGGGCCACTTGC 474
consensus_1477#1      ------------------------------------------------------------
                                                                                  

consensus_1477#0      ATTATCTGCTTGTTCCAACCTGGGTAATTATCGTCTTCTGCATCCCCTGCACAATCCTGG 534
consensus_1477#1      ------------------------------------------------------------
                                                                                  

consensus_1477#0      TTACAGTATATGTTAAAATGAGTAAAATGACTATGTAATTCTTGGTAATGTGGATCATGG 594
consensus_1477#1      ------------------------------------------------------------
                                                                                  

consensus_1477#0      AAATCGCACG 604
consensus_1477#1      ----------