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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2000 fasta sequence
[GCAGGAGGATGGAGTAGTAGAATGGATGGATGGATGGATGGATGAGGGTAGCTAGCTAATTGGCAAATTAAACAAAGAAGAAGAGGAAAGGAAGGAAGGAAGCGAAGGATCGATGATGCCGGCCGGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG-CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC-TGCCGATGCGAAGCGCGC-TCAACATCGCGCAGGTGGGC-ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTACAGCCTCGCCCT-GGAGACGGCCAACGAAGTC-ACCT-GGATC-AACTGCCGCCTGCGCCGGCGC-AAGGGCAAGCACCCTGGGC-GGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGCACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTCGCCACCACCAGCGGCCGCAACGCCTCCAGCTACCTCACCTTCGGCGCCAACCCGGCCGTCCAGGCTCCCGGCACCATGGAGACGCCGCTCCTGTACAGGGACGTCGCGTACGGCGCCCATGTCACCGGCATCCTCGTCGGCGGTCAACCACTGGACATCCCGCCCGAGGTGTGGGACGAGGGCCCCCTGGGGAACGACAACCCAGAAGCCGGCATCATCCTCGACACCGGCACCTCCATAACCTACCTCGTGTCGGCGGTGTACGACCCGGTGACGGCGGCGCTGGACAGCCACCTGGCGCACCTGCCTAAGGCCGAAATCAAGGGCTTCGAGTACTGCTACAACTGGACCTTCGCCGGTGACGGGGTGGACCCGGCTCACAACGTGACGATACCCAGTTTCAGCATCGAGATGGCCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCGTCCCGGGGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGCTCATGCAGGAGCACATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGGACAAATGCATCAACCATCAGCAGCTCAACAGGCACCACAAGAAGGCCTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGCACGCACGCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCGCATATATATATATATATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCATTATTAAGCTCGCATCGCATGTAATACTATTACTTATATATGTAATATATAATTAATCATATATATACATGTACTCTGCTCTACTACTACTACTACAGAAGTCTATATATACATTTGCTTGTCCTTCTATATAATATAGGGA]
[+] EMBL AK121242 [GCAGGAGGATGGAGTAGTAGAATGGATGGATGGATGGATGGATGAGGGTAGCTAGCTAATTGGCAAATTAAACAAAGAAGAAGAGGAAAGGAAGGAAGGAAGCGAAGGATCGATGATGCCGGCCGGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAGCGCGC TCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTACAGCCTCGCCCT GGAGACGGCCAACGAAGTC ACCT GGATC AACTGCCGCCTGCGCCGGCGC AAGGGCAAGCACCCTGGGC GGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGCACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTCGCCACCACCAGCGGCCGCAACGCCTCCAGCTACCTCACCTTCGGCGCCAACCCGGCCGTCCAGGCTCCCGGCACCATGGAGACGCCGCTCCTGTACAGGGACGTCGCGTACGGCGCCCATGTCACCGGCATCCTCGTCGGCGGTCAACCACTGGACATCCCGCCCGAGGTGTGGGACGAGGGCCCCCTGGGGAACGACAACCCAGAAGCCGGCATCATCCTCGACACCGGCACCTCCATAACCTACCTCGTGTCGGCGGTGTACGACCCGGTGACGGCGGCGCTGGACAGCCACCTGGCGCACCTGCCTAAGGCCGAAATCAAGGGCTTCGAGTACTGCTACAACTGGACCTTCGCCGGTGACGGGGTGGACCCGGCTCACAACGTGACGATACCCAGTTTCAGCATCGAGATGGCCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCGTCCCGGGGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGCTCATGCAGGAGCACATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGGACAAATGCATCAACCATCAGCAGCTCAACAGGCACCACAAGAAGGCCTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGCACGCACGCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCGCATATATATATATATATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCATTATTAAGCTCGCATCGCATGTAATACTATTACTTATATATGTAATATATAATTAATCATATATATACATGT ]
[+] EMBL AK068911 [ GGAGGATGGAGTAGTAGAATGGATGGATGGATGGATGGATGAGGGTAGCTAGCTAATTGGCAAATTAAACAAAGAAGAAGAGGAAAGGAAGGAAGGAAGCGAAGGATCGATGATGCCGGCCGGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAGCGCGC TCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTACAGCCTCGCCCT GGAGACGGCCAACGAAGTC ACCT GGATC AACTGCCGCCTGCGCCGGCGC AAGGGCAAGCACCCTGGGC GGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGCACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTCGCCACCACCAGCGGCCGCAACGCCTCCAGCTACCTCACCTTCGGCGCCAACCCGGCCGTCCAGGCTCCCGGCACCATGGAGACGCCGCTCCTGTACAGGGACGTCGCGTACGGCGCCCATGTCACCGGCATCCTCGTCGGCGGTCAACCACTGGACATCCCGCCCGAGGTGTGGGACGAGGGCCCCCTGGGGAACGACAACCCAGAAGCCGGCATCATCCTCGACACCGGCACCTCCATAACCTACCTCGTGTCGGCGGTGTACGACCCGGTGACGGCGGCGCTGGACAGCCACCTGGCGCACCTGCCTAAGGCCGAAATCAAGGGCTTCGAGTACTGCTACAACTGGACCTTCGCCGGTGACGGGGTGGACCCGGCTCACAACGTGACGATACCCAGTTTCAGCATCGAGATGGCCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCGTCCCGGGGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGCTCATGCAGGAGCACATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGGACAAATGCATCAACCATCAGCAGCTCAACAGGCACCACAAGAAGGCCTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGCACGCACGCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCGCATATATATATATATATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCATTATTAAGCTCGCATCGCATGTAATACTATTACTTATATATGTAATATATAATTAATCATATATATACATGTACTCTGCTCTACTACTACTACTACAGAAGTCTATATATACATTTGCTTGTCCTTCTATATAATATAGGGA]
[+] EMBL AU183117 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGGCCGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAGCGCGC TCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTACAGCCTCGCCCT GGAGACGGCCAACGAAGTC ACCT GGATC AACTGCCGCCTGCGCCGGCGC AAGGGCAAGC ]
[+] EMBL C98992 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAGGCCGCTTCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGGTTCCCTACAGCCTTGGCCTGGGAGACGGCCAACG ANTC AACTNGGATC AACTGCCG CTTCGCC GCGC AAGGG AAG A CCTTGGC GGn ]
[+] EMBL AU070092 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCNAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAG GCGC TCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGAATC GNAACCCGGCG TTCCCTACAGCCTTG CCT TGAGACGGCCAACGAAGTCAACCT NGATCAAATTTCCGACTTCGCCGGCGA AAGGtaaa ]
[+] EMBL AU070077 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCNAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAG GNGC TCAACATCGCGCANGTGGGC ATGTACGTGGTGGTTGTCCGNATCGGCAACCCGGCG TTCCCTACAGCCTTGNCCT TGAGACGGCCAACG AGTC Aacc ]
[+] EMBL AU070066 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCNAGCACTTCCGGGCGTTGATGGCCAAGGACATNAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTNCAAGACGGACATGTTCGAGCTTTCCGATNCGAAG GCGCTTCAACATCGCGCAGGTGGGC ATTTA ]
[+] EMBL AU163668 [ CGCAGGTGGGCAATGTACGTGGTGGTTGTCGGCATCGGCACCCCGGCGCTCCCNTACAGCNTGGCCTT GAAGACGGCCAACGAAGTC ACTT GGATC AACTGCCGCTTGCGCCGGCGCAAAGGGCAAGCACCTTGGGCGGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGAC GAAGCGGAGNAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGCACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTC ]
consensusID : consensus_14770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 531 fasta sequence
[GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC-TGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGC-ACCTACTACCAGGTGATGAAGGACTCGACCATCAACAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTC]
[+] EMBL AU094290 [GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGC ACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTC]
[+] EMBL AU064778 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGTTTCCGCTTGCTCCCAGCGCGCCTGCATGGACCTCC ]
[+] EMBL AU064744 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATGGACCTCCCCTANAACAACTGCGAGAG CCCGACCAGAACAACTNCTGC AACTACTACCAGGTGATGAAGG CTCGACCATCAACAGCGGCATCTACGGNCAGGAGAAGGCCA ]
[+] EMBL AU064655 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAANGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATNGACCTCCCCTACAACACCTGCGAGAGCCCCGANCAGAACACCTCCTGC ACCTACTACCAGGTGATGAANGACTCGACCATCACCAGCGGCAT ]
[+] EMBL AU064657 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCNCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGGCCTGCCAAGTCCTCCTCGTGGCGCCGCTTNCGC TGCTACCAGNGCGTCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGANCAACTTCTGC ACCTACTACCAGGTGATGAAGGACTNGACCATTAA ]
[+] EMBL AU064788 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACAACTGCGAGAGCCCCGACCAGAACANCTNCTGC ACCTACTACCAGGTGATGAAGGACTNGACCATta ]
[+] EMBL AU064779 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGNCTGCATGGACCTCCCCTACAACAACTGCGAGAGCCCCGACCAGAACAACTTCTGCAACTTATTACCAGGTG ]
[+] EMBL C73372 [ CCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTNGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATNAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCNAGAGCCCCGACCAGAACACCTCCTGC ACCTACTACCAGGTGATGAAGGACTCGACCATCAACAGCGGCATCTACGGCCAGGAGAAGGCCA ]
consensusID : consensus_14770#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTNGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGNTTNCGCTGCTNCCAGCGCGCCTGCATGGACCTTCCCTACAACAACTGCGAGAGCCCGACCAGAACAACTTTCTGCAACTACTACCAGGTGATGAAGGACTTGACCATTAACAGCGGCATTTACGGCCAAGAGAAGGCAACGTTGCCGTTTTCGAGGAAACCATNAAGAAGTTACCTNGCTTGTAATTGGTTNTTT]
[+] EMBL AU064560 [TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTNGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGNTTNCGCTGCTNCCAGCGCGCCTGCATGGACCTTCCCTACAACAACTGCGAGAGCCCGACCAGAACAACTTTCTGCAACTACTACCAGGTGATGAAGGACTTGACCATTAACAGCGGCATTTACGGCCAAGAGAAGGCAACGTTGCCGTTTTCGAGGAAACCATNAAGAAGTTACCTNGCTTGTAATTGGTTNTTT]
consensusID : consensus_14770#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[NTCCCGGTCCCTTGGTGGTGGTCCTCCTNCTAAGCCTGCGCCGGCGCAAGGNCAAGCACCCTGGGCGGCCCCACGTGNCCCCCGCCGCCACCANCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTGCCCTACANCAACTGCGAGAGCCCCGACCAGAACAGCTTCTGCAACTACTACCAGGTGATGAAGGCTTGACCATAACAGCGGAATTTACGGCAGGNGAAGGCCACCGTTGGCGTTTTCGANGAACCATGAAGAAGTNACTTGGCTTGTAATNGGTT]
[+] EMBL C74613 [NTCCCGGTCCCTTGGTGGTGGTCCTCCTNCTAAGCCTGCGCCGGCGCAAGGNCAAGCACCCTGGGCGGCCCCACGTGNCCCCCGCCGCCACCANCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTGCCCTACANCAACTGCGAGAGCCCCGACCAGAACAGCTTCTGCAACTACTACCAGGTGATGAAGGCTTGACCATAACAGCGGAATTTACGGCAGGNGAAGGCCACCGTTGGCGTTTTCGANGAACCATGAAGAAGTNACTTGGCTTGTAATNGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 GCAGGAGGATGGAGTAGTAGAATGGATGGATGGATGGATGGATGAGGGTAGCTAGCTAAT 60
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 TGGCAAATTAAACAAAGAAGAAGAGGAAAGGAAGGAAGGAAGCGAAGGATCGATGATGCC 120
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 GGCCGGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGG 180
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 GATCCATGGGCGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGA 240
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 GGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGA 300
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 GGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCA 360
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 GGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGCTGCCGATGCGAAGCGCGCTCAA 420
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 CATCGCGCAGGTGGGCATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTA 480
consensus_14770#2 --------TCCCGGTCCC--TTGGTGGTGGTCCTCCTCCTAA-----GCCTGCGCCGGCG 45
consensus_14770#3 -------NTCCCGGTCCC--TTGGTGGTGGTCCTCCTNCTAA-----GCCTGCGCCGGCG 46
consensus_14770#1 ------GGTCCCGGTCCC--TTGGTGGTGGTCCTCCTCCTAA-----GCCTGCGCCGGCG 47
consensus_14770#0 CAGCCTCGCCCTGGAGACGGCCAACGAAGTCACCTGGATCAACTGCCGCCTGCGCCGGCG 540
** ** * * * * ** *************
consensus_14770#2 CAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCA 105
consensus_14770#3 CAAGGNCAAGCACCCTGGGCGGCCCCACGTGNCCCCCGCCGCCACCANCATGTCCATCCA 106
consensus_14770#1 CAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCA 107
consensus_14770#0 CAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCA 600
***** ************************* *************** ************
consensus_14770#2 AGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGAT 165
consensus_14770#3 AGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGAT 166
consensus_14770#1 AGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGAT 167
consensus_14770#0 AGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGAT 660
************************************************************
consensus_14770#2 CATGAACTNGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGNTTNCGCTGCTNCCAGCG 225
consensus_14770#3 CATGAACTGGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCG 226
consensus_14770#1 CATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCG 227
consensus_14770#0 CATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCG 720
******** ****** ************************** ** ******* ******
consensus_14770#2 CGCCTGCATGGACCTTCCCTACAACAACTGCGAGAGCCC-GACCAGAACAACTTTCTGCA 284
consensus_14770#3 CGCCTGCATGGACCTGCCCTACANCAACTGCGAGAGCCCCGACCAGAACAGCTT-CTGCA 285
consensus_14770#1 CGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTC-CTGCA 286
consensus_14770#0 CGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTC-CTGCA 779
*************** ******* ** ************ ********** ** *****
consensus_14770#2 ACTACTACCAGGTGATGAAGGACTTGACCATTAACAGCGGCATTTACGGCCAAGAGAAGG 344
consensus_14770#3 ACTACTACCAGGTGATGAAGG-CTTGACCAT-AACAGCGGAATTTACGGCAGGNGAAGGC 343
consensus_14770#1 CCTACTACCAGGTGATGAAGGACTCGACCATCAACAGCGGCATCTACGGCCAGGAGAAGG 346
consensus_14770#0 CCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGG 839
******************** ** ****** * ****** ** ****** * *
consensus_14770#2 C-AACGTTGCCGTTTTCGAGGAAACCATNAAGAAGTTACCTNGCTT-GTAATTGGTTNTT 402
consensus_14770#3 C-ACCGTTGGCGTTTTCGANGAA-CCATGAAGAAGTNACTTGGCTT-GTAATNGGTT--- 397
consensus_14770#1 CCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCT 406
consensus_14770#0 CCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCT 899
* * *** * *** * *** * **** ****** ** * ** * ** ** ** *
consensus_14770#2 T----------------------------------------------------------- 403
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 CCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACA 466
consensus_14770#0 CCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACA 959
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 GCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCC 526
consensus_14770#0 GCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCC 1019
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 TCCTC------------------------------------------------------- 531
consensus_14770#0 TCCTCGCCACCACCAGCGGCCGCAACGCCTCCAGCTACCTCACCTTCGGCGCCAACCCGG 1079
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 CCGTCCAGGCTCCCGGCACCATGGAGACGCCGCTCCTGTACAGGGACGTCGCGTACGGCG 1139
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 CCCATGTCACCGGCATCCTCGTCGGCGGTCAACCACTGGACATCCCGCCCGAGGTGTGGG 1199
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 ACGAGGGCCCCCTGGGGAACGACAACCCAGAAGCCGGCATCATCCTCGACACCGGCACCT 1259
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 CCATAACCTACCTCGTGTCGGCGGTGTACGACCCGGTGACGGCGGCGCTGGACAGCCACC 1319
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 TGGCGCACCTGCCTAAGGCCGAAATCAAGGGCTTCGAGTACTGCTACAACTGGACCTTCG 1379
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 CCGGTGACGGGGTGGACCCGGCTCACAACGTGACGATACCCAGTTTCAGCATCGAGATGG 1439
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 CCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCGTCCCGG 1499
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 GGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGC 1559
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 TCATGCAGGAGCACATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGG 1619
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 ACAAATGCATCAACCATCAGCAGCTCAACAGGCACCACAAGAAGGCCTCTTCTTCCTCCT 1679
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 CCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGCACGCAC 1739
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 GCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCG 1799
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 CATATATATATATATATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCAT 1859
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 TATTAAGCTCGCATCGCATGTAATACTATTACTTATATATGTAATATATAATTAATCATA 1919
consensus_14770#2 ------------------------------------------------------------
consensus_14770#3 ------------------------------------------------------------
consensus_14770#1 ------------------------------------------------------------
consensus_14770#0 TATATACATGTACTCTGCTCTACTACTACTACTACAGAAGTCTATATATACATTTGCTTG 1979
consensus_14770#2 ---------------------
consensus_14770#3 ---------------------
consensus_14770#1 ---------------------
consensus_14770#0 TCCTTCTATATAATATAGGGA 2000
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||