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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1350 fasta sequence
[AAAAAAAAAAAAAAAAATTAGCTTAGCTAGTGTTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGCAAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTCCTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGCTCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCGGGGACGGACGCGTCGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGGACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGC-TTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTGAAAAAAAA]
[+] EMBL AK060983 [AAAAAAAAAAAAAAAAATTAGCTTAGCTAGTGTTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGCAAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTCCTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGCTCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCGGGGACGGACGCGTCGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGGACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGC TTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTT ]
[+] EMBL AU184303 [ ACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGCAAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTNCTCGACGACGAGGACGAGCGCAGGGGCATCCCC ]
[+] EMBL AA751349 [ cgtGTGCACTCGACGCCGGCGCTGAG CCCAT GGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGC ACAAGTC ]
[+] EMBL AU223073 [ GATCCTGAGGACGNCGGTGCACTCAAGGGCGTACGTGCTGGGGGCGCTGGTAAAGCCCAAGTTCNCACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGNCCATNTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTNGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTGAAAAAAAA]
[+] EMBL AU184304 [ ACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGC TTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTaaaaaaaaa ]
consensusID : consensus_14774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1329 fasta sequence
[CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGA--GGT-CNATNTAGNTTAGCTAGTGTTAGNGAGNTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTTCTCGTNCAGCCGCTTNTTCGGCCAACCCAAGCGCAAGGGCGACAAGTCCAG-TTCGGCCGNAA-GGCGCCCCGGCGGGGAAGGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTCCTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGCTCCCAGAAGCCACAGA-TAGTCATC-AAGAGCATCACGTTCGACAACTTCATAATCCAGG-CGGGGACGGACGCGTCGCTGGTG-CCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGC-TGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTG-CCGATGATCCTGAGGACG-ACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTAC-GATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSS3521A [CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGA GGTNCNATNTAGNTTAGCTAGTGTTAGNGAGNTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTNGGAGGTGACGAGCCTGGCGCCATCGTNGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTTCTCGTNCAGCCGCTTNTTCGGCCAACCCAAGCGCAAGGGCGACAAGTCCAG TTCGGCCGNAA GGCGCCCCGGCGGGGAAGGGGTTGC ]
[+] EMBL OSS3518A [CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGA GGT CNATNTAGNTTAGCTAGTGTTAGNGAGNTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGNAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTTGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGG ]
[+] EMBL OSS3392A [CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGA GGT CTANTTAGCTTAGCTAGTNTTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGNCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGNCGCCGNGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTTCAGAGCCCGTNGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTTGCAC ]
[+] EMBL AK068260 [ TTATTAGTATTACTCCTACCACGGAGTGGT C AT TAGCTTAGCTAGTGTTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCGGCGGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGAGGGACTCGCATGACGGGGAGAAGACGGCGACGTCGG TGCACTCGACGCCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGCAAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTCCTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGCTCCCAGAAGCCACAGA TAGTCATC AAGAGCATCACGTTCGACAACTTCATAATCCAGG CGGGGACGGACGCGTCGCTGGTG CCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGC TGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTG CCGATGATCCTGAGGACG ACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTAC GATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAACGATC ]
[+] EMBL AU029634 [ CAGATCAAGAAGAAGCTAGAGAGAGANCAGAGGAGCAAGCAGATCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCCGCCGCGGTCCCCGACGTCGCGCNGCGGGCGGCCGGTGTACTACGTGCAGANCCCGTCGANGGACTCGCATGACGGGGAGAAGACGGCGACGTCGGTT CACTCNACGCCGGCGCTGAG CCCATTGGGTCGCCGCGGCACTCGGTTGGCAngac ]
[+] EMBL AU029635 [ ACAGATTAGTCATCAAAGACCNTCACTTTCGAAAACTTCTTAATCCAGGCCGGNGACGGACCCGTCGCTGGTGCCCGACGGACATGGCGACGACCAACTCGACGNTGAAGCTGACTTACCGGAACACGGGCACGTTCTTCGGGATCCACNTGACGGCGGACCCGTTCACGCTGTCGTA ACCAANCGTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGTCCGATGATCCTGAGGACGTACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTAC GATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAAaaaaaa ]
[+] EMBL C97098 [ CGTTCGACAACTTCATAATCCAGG CGGGGACGGACGCGTCGCTGGTG CCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGC TGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTNATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCANAATGGCTCCGGTG CCGATGATCCTAAGGACG ACGGTGCACTCGAGGG ]
[+] EMBL CB682650 [ GAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGC TGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTG CCGATGATCCTGAGGACG ACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTAC GATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTT ]
[+] EMBL AU222876 [ GTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTG CCGATGATCCTGAGGACG ACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGACAAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGGATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTACGGATCTGATCTGTGCATTCTTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATACCAAAaaa ]
[+] EMBL AU092518 [ TTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTATTTCCCAGTCAGATTCGTTATTATNCCAAACGATCAATTCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14774#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[GCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCGCCGCGGTCCCCGACGTCGCGCGGGTCGGCCGGTTGTACTACGTGCAGANCCGTCGAGGACTCGCATGACGGGGAGAAGACGGCGACGTNGNTNCACTCGACGCCGGCGCTGAGCCCATGGGTCGCCGCNGCACTCGGTNGGCAGGGACTNCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTNCAGCTCCGGCCGCAAGGGNCCCGGCGGAAAGTGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAAGGGNCTCC]
[+] EMBL C28487 [GCACGCCAAGACGGACTCGGAGGTGACGAGCCTGGCGCCATCGTCGCGCCGCGGTCCCCGACGTCGCGCGGGTCGGCCGGTTGTACTACGTGCAGANCCGTCGAGGACTCGCATGACGGGGAGAAGACGGCGACGTNGNTNCACTCGACGCCGGCGCTGAGCCCATGGGTCGCCGCNGCACTCGGTNGGCAGGGACTNCTCGTCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTNCAGCTCCGGCCGCAAGGGNCCCGGCGGAAAGTGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAAGGGNCTCC]
consensusID : consensus_14774#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[TTCCTGCTGCTTCTTTCTTCCTTTCTCTCTGACGGATCTGGATCTGTGCGATTCTTCCTTTTCTTTTTTCCTTTTTGCGGGATCCGAACGAACGAGCCGATGAGAGATGATGTGATGTNACTGTGATTTCCCGAGTCNAGGATTCGTTGATTGATGACCGAGAACGGATCGAATTCGTTGCNAGGATTGNATGGAGGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTGAAAAAA]
[+] EMBL AU097287 [TTCCTGCTGCTTCTTTCTTCCTTTCTCTCTGACGGATCTGGATCTGTGCGATTCTTCCTTTTCTTTTTTCCTTTTTGCGGGATCCGAACGAACGAGCCGATGAGAGATGATGTGATGTNACTGTGATTTCCCGAGTCNAGGATTCGTTGATTGATGACCGAGAACGGATCGAATTCGTTGCNAGGATTGNATGGAGGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTGAAAAAA]
consensusID : consensus_14774#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence
[CCTGGCGCNANNCCTGCTCNCCNCGGTANCCCNACGTCCCGCGGCGGGCGGCCGGTTTACTACGTCCAGAGCCCGTCAAGGNACTCGNATGACGGGAAGAAGACGGCAACGTCGGTNCACTCAACGCCGGCCCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGNACTCCTCGTCCAGCCGCTTCTNCGGCCACCCC]
[+] EMBL OSS1209A [CCTGGCGCNANNCCTGCTCNCCNCGGTANCCCNACGTCCCGCGGCGGGCGGCCGGTTTACTACGTCCAGAGCCCGTCAAGGNACTCGNATGACGGGAAGAAGACGGCAACGTCGGTNCACTCAACGCCGGCCCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGNACTCCTCGTCCAGCCGCTTCTNCGGCCACCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 CTCTTCTCTATAGTTATTAGTATTACTCCTACCACGGAGGTCNATNTAGNTTAGCTAGTG 60
consensus_14774#0 ----------------------------AAAAAAAAAAAAAAAAATTAGCTTAGCTAGTG 32
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 TTAGNGAGNTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGA 120
consensus_14774#0 TTAGCGAGCTCCACTGCCAGATCAAGAAGAAGCTAGAGAGAGAGCAGAGGAGCAAGCAGA 92
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 -------------------------GCACGCCAAGACGGACTCGGAGGTGACGAGCCTGG 35
consensus_14774#4 -------------------------------------------------------CCTGG 5
consensus_14774#1 TCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGG 180
consensus_14774#0 TCAAGAAGAAGAAGACGAGGAAGATGCACGCCAAGACGGACTCGGAGGTGACGAGCCTGG 152
consensus_14774#3 --------------------------------------------------------TTCC 4
*
consensus_14774#2 CGCCATCGTCG--CGCCGCGGT-CCCCGACGTCGCGCGG--GTCGGCCGGTTGTACTACG 90
consensus_14774#4 CGCNANNCCTGCTCNCCNCGGTANCCCNACGTCCCGCGGCGGGCGGCCGGTT-TACTACG 64
consensus_14774#1 CGCCATCGTCGC-CGCCGCGGT-CCCCGACGTCGCGCGGCGGGCGGCCGGTG-TACTACG 237
consensus_14774#0 CGCCATCGTCGC-CGCCGCGGT-CCCCGACGTCGCGCGGCGGGCGGCCGGTG-TACTACG 209
consensus_14774#3 TGCTGCTTCTTTCTTCCTTTCT-CTCTGACGGATCTGGATCTGTGCGATTCTTCCTTTTC 63
** ** * * *** * * * *
consensus_14774#2 TGCAGANCC-GTCGAGGA-CTCGCATGA-CGGGGAGAAGACGGCGACGTNGNTN-CACT- 145
consensus_14774#4 TCCAGAGCCCGTCAAGGNACTCGNATGA-CGGGAAGAAGACGGCAACGTCGGTN-CACT- 121
consensus_14774#1 TGCAGAGCCCGTCGAGGGACTCGCATGA-CGGGGAGAAGACGGCGACGTCGGTTGCACT- 295
consensus_14774#0 TGCAGAGCCCGTCGAGGGACTCGCATGA-CGGGGAGAAGACGGCGACGTCGGTG-CACT- 266
consensus_14774#3 TTTTTTCCTTTTTGCGGGATCCGAACGAACGAGCCGATGAGAGATGATGTGATGTNACTG 123
* * * ** ** * ** ** * ** ** * * * ***
consensus_14774#2 CGACG--CCGGCGCTGAGCCC-ATGGG-TCGCCGCNGCACTCGGTNGGCAGGGACTNCTC 201
consensus_14774#4 CAACG--CCGGCCCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGNACTCCTC 179
consensus_14774#1 CGACG--CCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTTCTC 353
consensus_14774#0 CGACG--CCGGCGCTGAGCCCCATGGGGTCGCCGCGGCACTCGGTGGGCAGGGACTCCTC 324
consensus_14774#3 TGATTTCCCGAGTCNAGGATTCGTTGATTGATGACCGAGAACGGATCGAATTCGTTGCNA 183
* *** * * * * * * * *** * * * *
consensus_14774#2 G--TCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTNCAGCTCCGGCCGC 259
consensus_14774#4 G--TCCAGCCGCTTCTNCGGCCACCCC--------------------------------- 204
consensus_14774#1 G--TNCAGCCGCTTNTTCGGCCAACCCAAGCGCAAGGGCGACAAGTCCAGTTCGGCCGNA 411
consensus_14774#0 G--TCCAGCCGCTTCTCCGGCCACCCCAAGCGCAAGGGCGACAAGTCCAGCTCCGGCCGC 382
consensus_14774#3 GGATTGNATGGAGGATCGATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTAT 243
* * * * * * *
consensus_14774#2 AAGGGN--CCCGGCGGAAAGTGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAAGGGNCT 317
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 AGGCGC--CCCGGCGGGGAAGGGGTTGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTC 469
consensus_14774#0 AAGGGCGCCCCGGCGGGGAAGGGGTGGCAGGAGATCGGCGTGATCGAGGAGGAGGGCCTC 442
consensus_14774#3 GCTTATCTTTCGAGATTGAAAAAA------------------------------------ 267
consensus_14774#2 CC---------------------------------------------------------- 319
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 CTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTC 529
consensus_14774#0 CTCGACGACGAGGACGAGCGCAGGGGCATCCCCAAGCGCTGCAAGTACTTCCTCATCTTC 502
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 GTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGC 589
consensus_14774#0 GTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGCCAGCCGC 562
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 TCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCG 649
consensus_14774#0 TCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCG 622
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 GGGACGGACGCGTCGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTG 709
consensus_14774#0 GGGACGGACGCGTCGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTG 682
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 ACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTG 769
consensus_14774#0 ACGTACCGGAACACGGGCACGTTCTTCGGGATCCACGTGACGGCGGACCCGTTCACGCTG 742
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 TCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGC 829
consensus_14774#0 TCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGCCCGGAGC 802
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 AGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGG 889
consensus_14774#0 AGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGG 862
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 CCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGG 949
consensus_14774#0 CCGACGCTGACGGCGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGG 922
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 ACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGC 1009
consensus_14774#0 ACGACGGTGCACTCGAGGGCGTACGTGCTGGGGGCGCTGGTGAAGCCCAAGTTCACACGC 982
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 GCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGAC 1069
consensus_14774#0 GCCATCGAGTGCAAGGTCCTCATGAACCCCGCCAAGCTCAACAAGCCCATCTCCCTCGAC 1042
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 AAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGG 1129
consensus_14774#0 AAGTCCTGCATTTACCTCTGAATCCATCATATTCATTCATTATTATCACCTGCTCCTCGG 1102
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 ATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTC 1189
consensus_14774#0 ATCACCTCCATTCCTGCTGCTTCTTTCTTCCTTTCTCTCTACGATCTGATCTGTGCATTC 1162
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 TTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTA 1249
consensus_14774#0 TTCCTTTTCTTTTTTCCTTTTTGCGGATCCAACAACAGCCATAAATATGTATGTACTGTA 1222
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 TTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAAAAAAAAAAAAAAA 1309
consensus_14774#0 TTTCCCAGTCAGATTCGTTATTATACCAAACGATCAATTCGTTGCAGATTGATGAGATCG 1282
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 ------------------------------------------------------------
consensus_14774#4 ------------------------------------------------------------
consensus_14774#1 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 1329
consensus_14774#0 ATCGATCAGGTGGCAGAAAATGAAATACACAGAGCTGAGTATGCTTATCTTTCGAGATTG 1342
consensus_14774#3 ------------------------------------------------------------
consensus_14774#2 --------
consensus_14774#4 --------
consensus_14774#1 --------
consensus_14774#0 AAAAAAAA 1350
consensus_14774#3 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||