Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1478 cluster # 1478       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1478#0 length = 1036 sequences # 1  
consensus_1478#1 length = 133 sequences # 1  

consensusID : consensus_1478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1036
fasta sequence
                              [CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCGTGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGTGGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCAGCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGCCAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGAAGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGAGAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGCAGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATATGGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAGATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAAAATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGTCACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGAAGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAAACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTTGCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAGTAAAACATCCGACGAG]

[+] EMBL AK112087             [CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCGTGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGTGGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCAGCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGCCAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGAAGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGAGAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGCAGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATATGGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAGATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAAAATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGTCACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGAAGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAAACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTTGCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAGTAAAACATCCGACGAG]


>consensus_1478#0 CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCG TGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGT GGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCA GCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGC CAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGA AGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGA GAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGC AGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATAT GGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAG ATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAA AATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGT CACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGA AGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTG GGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTAC AAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAA ACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTT GCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAG TAAAACATCCGACGAG



consensusID : consensus_1478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 133
fasta sequence
                              [GAATCGGCACGAGGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT]

[+] EMBL CA999422             [GAATCGGCACGAGGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT]


>consensus_1478#1 GAATCGGCACGAGGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTG GAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACT CTACCAAAGCTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1478#0      CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCG 60
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      TGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGT 120
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCA 180
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGC 240
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      CAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGA 300
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      AGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGA 360
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGC 420
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      AGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATAT 480
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAG 540
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      ATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAA 600
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      AATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGT 660
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      CACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGA 720
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      AGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTG 780
consensus_1478#1      -----------------------------GAATCGGCACGAGGGGAACCTCCCGGAGGTG 31
                                                    **      * * ******************

consensus_1478#0      GGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTAC 840
consensus_1478#1      GGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTAC 91
                      ************************************************************

consensus_1478#0      AAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAA 900
consensus_1478#1      AAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT------------------ 133
                      ******************************************                  

consensus_1478#0      ACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTT 960
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      GCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAG 1020
consensus_1478#1      ------------------------------------------------------------
                                                                                  

consensus_1478#0      TAAAACATCCGACGAG 1036
consensus_1478#1      ----------------
                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)