These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1036 fasta sequence [CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCGTGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGTGGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCAGCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGCCAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGAAGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGAGAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGCAGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATATGGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAGATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAAAATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGTCACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGAAGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAAACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTTGCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAGTAAAACATCCGACGAG] [+] EMBL AK112087 [CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCGTGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGTGGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCAGCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGCCAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGAAGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGAGAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGCAGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATATGGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAGATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAAAATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGTCACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGAAGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAAACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTTGCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAGTAAAACATCCGACGAG] consensusID : consensus_1478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [GAATCGGCACGAGGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT] [+] EMBL CA999422 [GAATCGGCACGAGGGGAACCTCCCGGAGGTGGGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTACAAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1478#0 CAAGAGCTGGAGGGAATTTCCACATGCAGATGAGTATGACTTAGAACAAGCCGAGTCTCG 60 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 TGAACATAAGAGGTGGATGGAGAGGCAGAATGCAAAACTACAGGAGAAGGCCAAAAAGGT 120 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 GGAGTATGCGCGAGTACGGACTCTTGTTGACAATGCTTACAAAAAGGACCCACGAATTCA 180 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 GCGGAGGAAGGAGGAGGAGAAGGCTGAGAAACAGAGGAGGAAGGAGGCAAAATACCTGGC 240 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 CAAAAAGATGCAAGAGGAAGAAGCTGCAAGGGCTGCAGAAGAGGAAAGGAAGAGGAAAGA 300 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 AGAGGAAGCAAAGAGAGCTGCAGAGGCTGCTCTCAATCAGAAAAAGTTGAAGGAGAAGGA 360 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 GAAGAAGCTGCTACGCAAAGAGAAAACCCGTCTGCGCAATCTTGTTGCACCGGTAGTTGC 420 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 AGAGAGCCACTTTTCTCTGTCAGAAGATGATGTCGAAACAGCATGCTCGTCACTTGATAT 480 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 GGAACGACTGAAGAAGCTCTGTGATAGCATGGAGAACAAAGATACAACAGAAAAGGCCAG 540 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 ATTACTCAGTGGTGCTCTGAGCAAAGAAGGCTCGTCTGGTACTTCAAATGAAGGAAAGAA 600 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 AATTCAAGCAAACGGCGTGGATGGTTCCAAAGCAAAATCCACCTCTTCAGGTGAGAAGGT 660 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 CACGCAAGGCAATACACTAAGCAACTATGAGAAGAAAGAAGAGAAACCATGGGGAAGGGA 720 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 AGAGATCGAGTTGCTTAGGAAAGCAATACAAAAGTATCCAAAGGGAACCTCCCGGAGGTG 780 consensus_1478#1 -----------------------------GAATCGGCACGAGGGGAACCTCCCGGAGGTG 31 ** * * ****************** consensus_1478#0 GGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTAC 840 consensus_1478#1 GGAGGTTGTCTCTGAGTTTATTGGAACTGGAAGATCTGTTGAAGAAATTCTGAAGGCTAC 91 ************************************************************ consensus_1478#0 AAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTTTGACTCTTTCCTTGAGAA 900 consensus_1478#1 AAAGACTGTTCTTTTGCAGAAACCGGACTCTACCAAAGCTTT------------------ 133 ****************************************** consensus_1478#0 ACGCAAGCCAGCACCGTCCATTGCATCACCTCTTTCTGTAAGAACTGAAACAGTTGGTTT 960 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 GCCTACTGAGAAAGCAGCTGGAAATGCATCATCCAAAGCGCCTGCACAACATGCAAGCAG 1020 consensus_1478#1 ------------------------------------------------------------ consensus_1478#0 TAAAACATCCGACGAG 1036 consensus_1478#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||