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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1016 fasta sequence
[TTTTTGCCTTTCCCTTTTCCCTTTCCTCGCTCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGG-AGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA-ATCGTC-TCTATGAAAACAA-GGCTCAAC-TAAATTCAGTATCAATGCATCTTGG-AGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTC-AAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF311983 [TTTTTGCCTTTCCCTTTTCCCTTTCCTCGCTCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGG AGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA ATCGTC TCTATGAAAACAA GGCTCAAC TAAATTCAGTATCAATGCATCTTGG AGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTC AAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGG ]
[+] EMBL CF311232 [ TTCCTCGCTCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGG AGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA ATCGTC TCTATGAAAACAA GGCTCAAC TAAATTCAGTATCAATGCATCTTGG AGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTC AAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCA ]
[+] EMBL AU064175 [ TCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGNCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTNGNGT AGTGGCAGCGCAA NTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAG GCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA ATCGTC TCTATGAAAACAA GGCTCAAC TAAATTCAGTATCAATGCATCTTGGNNGAAATTGTTGCAACGGCAAAGACTGTCGGTCATCTGTC AAAAAGTGCTGAAGTTATGNAAATCGTTAACAAT ]
[+] EMBL OSS13270A [ GCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCT CGGGNAGTGGCAGCGCAA CTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA ATCGTC TCTATGAAAACAN GGCTCAAC TAAATTCAGTATCAATGCATCTTGG AGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTC AAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTNGCTGCCACCATGCAAGAA ]
[-] EMBL CA763611 [ gtccaccgcCGTCCTGTTAGATCGTCTTCTATGAAACCAAGGGCCCAACGTAGATTCAGTAGCAGTGCATGTTGG AGAGATTGTTCCAACGGCAAGAACTGTCGGTCATCTGTCGAGAAGGTGC GGAGGTATGAAAATCGTTAGCAATCTAATGAGAGCTCCAGAATTGGCTCCCACCATGCAAGAATTTAGTAAAGAAATGACTAAGGCTGGTGTGATGGAAGAGATGGCCACCGATGCAGTTGATTCAGCTTTGGGCTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAACCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTAAAAAAAAAA ]
[+] EMBL AU094313 [ GATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAANAGGAGGTTGNCAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATNTGGAANAGATCAGAGCNCGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTNAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTANAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174017 [ GTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCNCAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTAAAAA ]
consensusID : consensus_14789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 779 fasta sequence
[GGACGAGACAAGGGGGAGGAGAAGAAGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG-CAATTGCTGGGGAGACTG-CCTCTGAGCTT-CCAGA-CGCTGTCAGGAAGGAAAAGGAGAAGATGAAG-CAACCTTCAA-CAAGTGAA-CCTG-CAGAGAGAACTGCTATT-GCGGAAG-CCGT------CGATGA-CGATGA-CGAGCTTGAA-CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG-TTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT-GTGTGTCATATCAGAAATAGAAACCCCCTGTTGTTATTAAC-AACTGATATACCTGCAACCTGCATTCACTGATACAAAATTGTTCAA-TCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAAA]
[+] EMBL CA767395 [GGACGAGACAAGGGGGAGGAGAAGAAGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG CAATTGCTGGGGAGACTG CCTCTGAGCTT CCAGA CGCTGTCAGGAAGGAAAGGGAGAAGATGAAG CAACCTTCAA CAAGTGAA CCTG CAGAGAGAACTGCTATT GCGGAAG CCGT CGATGA CGATGA CGAGCTTGAA CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG TTTGTTTTACTGTATTATACTCCACTTCAGAATGTATNGTGTGTCATATCAGAAATAGAAACCCCCTGTTGNTATTAACAAACTGATATACCTGCAACCTGCATTCACTGATACAAAATTGNTCAATTCTCAGTTGCAAGGGTAATTGTGTGCCCTG ]
[-] EMBL CF297663 [ TCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG CAATTGCTGGGGAGACTG CCTCTGAGCTT CCAGA CGCTGTCAGGAAGGAAAAGGAGAAGATGAAG CAACCTTCAA CAAGTGAA CCTG CAGAGAGAACTGCTATT GCGGAAG CCGTCGATGACGATGA CGATGA CGAGCTTGAA CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG TTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT GTGTGTCATATCAGAAATAGAAACCCCTTCTTGTTATTAACAAACTGATATACCTGCAACCTGCATTCACTGATACAAAATTGTTCAA TCTCAGTTGCAAGGGTAAaaa ]
[+] EMBL BI803489 [ GATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG C ATTGCTGGGGAGACTG CCTCTGAGCTT CCAGA CGCTGTCAGGAAGGAAAAGGAGAAGATGAAG CAACCTTCAA CAAGTGAA CCTG CAGAGAGAACTGCTATT GCGGAAG CCGT CGATGA CGATGA CGAGCTTGAA CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG TTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT GTGTGTCATATCAGAAATAGAAACCCCCTGTTGTTATTAAC AACTGATATACCTGCAACCTGCATTCACTGATAC AAATTGTTCAA TCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAAA]
[+] EMBL BI804117 [ GATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG CAATTGCTGGGGAGACTG CCTCTGAGCTT CCAGA CGCTGTCAGGAAGGAAAAGGAGAAGATGAAG CAACCTTCAA CAAGTGAA CCTG CAGAGAGAACTGCTATT GCGGAAG CCGT CGATGA CGATGA CGAGCTTGAA CAGATAAGGGAAAGGCTCGCC AAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG TTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT GTGTGTCATATCAGAAATAGAAACCCCCTGTTGTTATTAAC AACTGATATACCTGCAACCTGCATTCACTGATAC AAATTGTTCAA TCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAAA]
[+] EMBL BI803237 [ ATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACCAGGTCCTCTCTGCCAATTGCTGGGGAGACTGCCCTCTGAGCTTCCCAGACCGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCCAACCTTCAACCAAGTGAACCCTGCCAGAGAGAACTGCTATTGGCGGAAGCCCGT CGATGACCGATGACCGAGCTTGAACCAGATAAGGGAAAGGCTCGCCCAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGGCTTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT GTGTGTCATATCAGAAATAGAAACCCCCTGTTGTTATTAAC AACTGATATACCTGC ACCTGCATTCACTGATACCAAATTGTTCAA TCTCAGTTGCCAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAAA]
consensusID : consensus_14789#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 642 fasta sequence
[GGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTATCGACTTTTGTAAAAAA]
[-] EMBL CF311984 [GGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTATCGACTTTTGTAAAAA ]
[-] EMBL CF311233 [ CCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTATCGACTTTTGTAAAAAA]
consensusID : consensus_14789#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence
[GTCTGCTGCTTCCGAATTCCGATCGGAGAGCAGCTGGACTCCGGTGAGGGATCATGGAGGCGGTGAAGAGCCTCCTCAAGCCCAAGCCGACGCCGCAGCAGCAGCTTCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAAGGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAG]
[+] EMBL CF297662 [GTCTGCTGCTTCCGAATTCCGATCGGAGAGCAGCTGGACTCCGGTGAGGGATCATGGAGGCGGTGAAGAGCCTCCTCAAGCCCAAGCCGACGCCGCAGCAGCAGCTTCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAAGGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAG]
[+] EMBL CA998944 [ CAGCTTCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAA GGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCC ]
consensusID : consensus_14789#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[GGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGTGTGCTGTACTAATCATGCTGCTTTTGCTTAAGCACTCCGGTTTGTAGATTGTGATGCAGTACACACGAACATCATTTTTTTTACCCCCTTCTGTATATGCCTATATGGCTGGTTGGATCCCATTCGTCAGTTAATGCAAGTTTAAAGTTGATTTAATTTTATTACGTTGAGCAAAATGCTGCTCATTTGGCTTTGCAAACATCGAACCTGGTAGGGGAATGTGGACACTGCTTAGATTGTAATTGTTCGCTAAAACTTT]
[+] EMBL AK111095 [GGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGTGTGCTGTACTAATCATGCTGCTTTTGCTTAAGCACTCCGGTTTGTAGATTGTGATGCAGTACACACGAACATCATTTTTTTTACCCCCTTCTGTATATGCCTATATGGCTGGTTGGATCCCATTCGTCAGTTAATGCAAGTTTAAAGTTGATTTAATTTTATTACGTTGAGCAAAATGCTGCTCATTTGGCTTTGCAAACATCGAACCTGGTAGGGGAATGTGGACACTGCTTAGATTGTAATTGTTCGCTAAAACTTT]
consensusID : consensus_14789#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[TCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGGTTCGCTCCCCCATCTCCTCCTCCTCCCCCGACGCGCGACCCGACCTTCACGCGAGGTCTTTGTCTAGGTGTGTTCTCTTCCATATGATCGGGGGGGGGGGGGCTTATACTTCTGAATCGGGCAAGATTGTTTTCCTTGTTGGTGCCTCTGATTAAGCCGGCTGCGGTAAACATTTGCGTTGCCTCAGCGAGCAAATCGCGGGCTTGATTAGCGTTAGCAGCGCCCGTTTCTGCGATCGCTGGGACAAATT]
[-] EMBL AK109231 [TCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGGTTCGCTCCCCCATCTCCTCCTCCTCCCCCGACGCGCGACCCGACCTTCACGCGAGGTCTTTGTCTAGGTGTGTTCTCTTCCATATGATCGGGGGGGGGGGGGCTTATACTTCTGAATCGGGCAAGATTGTTTTCCTTGTTGGTGCCTCTGATTAAGCCGGCTGCGGTAAACATTTGCGTTGCCTCAGCGAGCAAATCGCGGGCTTGATTAGCGTTAGCAGCGCCCGTTTCTGCGATCGCTGGGACAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14789#0 TTTTTGCCTTTCCCTTTTCCCTTTCCTCGCTCCTCGTCCTGTCTGGCTGTCTCTCCTCCT 60
consensus_14789#2 ------------------------------------------------------------
consensus_14789#1 ------------------------------------------------------------
consensus_14789#3 ------------------------------------------------------------
consensus_14789#4 ------------------------------------------------------------
consensus_14789#5 ------------------------------------------------------------
consensus_14789#0 CCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCG 120
consensus_14789#2 ------------------------------------------------------------
consensus_14789#1 ------------------------------------------------------------
consensus_14789#3 ------GTCTGCTGCTTCCGAATTCCGATCGGAGAGCAGCTGGACTCCGGTGAGGGATCA 54
consensus_14789#4 ------------------------------------------------------------
consensus_14789#5 ------------------------------------------------------------
consensus_14789#0 ATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAG 180
consensus_14789#2 ------------------------------------------------------------
consensus_14789#1 ------------------------------------------------------------
consensus_14789#3 TGGAGGCGGTGAAGAGCCTCCTCAAGCCCAAGCCGACGCCGCAGCAGCAGCTTCGCGAGT 114
consensus_14789#4 ------------------------------------------------------------
consensus_14789#5 ------------------------------------------------------------
consensus_14789#0 TGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAG 240
consensus_14789#2 ------------------------------------------------------------
consensus_14789#1 --------------------------------------------GGACGAGACA---AGG 13
consensus_14789#3 GGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAGA 174
consensus_14789#4 ------------------------------------------------------------
consensus_14789#5 ------------------------------------------------------------
consensus_14789#0 AGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGA 300
consensus_14789#2 ------------------------------------------------------------
consensus_14789#1 GGGAGGAGAAGAAGG-TGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGA 72
consensus_14789#3 GGGAGGAGAAGAAGGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGA 234
consensus_14789#4 ------------------------------------------------------------
consensus_14789#5 ------------------------------------------------------------
consensus_14789#0 TCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT 360
consensus_14789#2 ------------------------------------------------------------
consensus_14789#1 TCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTAC 132
consensus_14789#3 TCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTAC 294
consensus_14789#4 ------------------------------------------------------------
consensus_14789#5 ------------------------------------------------------------
consensus_14789#0 GAAAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGCAACGGCA 420
consensus_14789#2 --------GGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGCAACGGCA 52
consensus_14789#1 GAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCC 192
consensus_14789#3 GAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCC 354
consensus_14789#4 ----------------------GGCTGTCTCTCCTCCTCCCCGCG-TGGCGGCGTCGGTA 37
consensus_14789#5 --------TCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCG-TGGCGGCGTCGGTA 51
* ** * * ** * * * ** * *
consensus_14789#0 AGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGT-----TATGAAAATCGTTAACAATC 475
consensus_14789#2 AGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGT-----TATGAAAATCGTTAACAATC 107
consensus_14789#1 AGGACTGTTGGCCATTTATCCAAGAGTACTGAGGT-----GATGAAACTTGTCAATAACC 247
consensus_14789#3 AGGACTGTTGGCCATTTATCCAAGAGTACTGAGGT-----GATGAAACTTGTCAATAACC 409
consensus_14789#4 GATACCGC--GTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTC 95
consensus_14789#5 GATACCGC--GTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTC 109
** * * ** ** * ** * *** * ** ** *
consensus_14789#0 TAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGG 535
consensus_14789#2 TAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAGG 167
consensus_14789#1 TTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGG 307
consensus_14789#3 TTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGG 469
consensus_14789#4 TGCTGAAGCCGC-------GGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAG 148
consensus_14789#5 TGCTGAAGCCGC-------GGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAG 162
* **** * * *** * * ** * * ** * * *
consensus_14789#0 CTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTC-AGCTTTGGACTCTGAGGAC 594
consensus_14789#2 CTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTC-AGCTTTGGACTCTGAGGAC 226
consensus_14789#1 CTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTC-AGCGCTGGACAATGAGGAC 366
consensus_14789#3 CTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTC-AGCGCTGGACAATGAGGAC 528
consensus_14789#4 CTC-CGCAACGAGTGCCGCG-TCCTCGAC-CGCCAGATCCGAGATGTGCAGAGGGAGGAG 205
consensus_14789#5 CTC-CGCAACGAGTGCCGCG-TCCTCGAC-CGCCAGATCCGAGGTTCGCTCCCCCA---- 215
** * * * * * * *** * *** * ** * *
consensus_14789#0 ATGGAGGAGGAAA--TTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGA 652
consensus_14789#2 ATGGAGGAGGAAA--TTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGA 284
consensus_14789#1 ATTGAGGAGGAGA--TTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAGA 424
consensus_14789#3 ATTGAGGAGGAGA--TTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAG- 585
consensus_14789#4 AAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG 265
consensus_14789#5 ---------------TCTCCTCCTCCTCCCCCGACGCGCGACCCGACC---TTCACGCGA 257
* * * * *
consensus_14789#0 CTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCA 712
consensus_14789#2 CTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCA 344
consensus_14789#1 CTGCCTCTGAGCTTCCAGACGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCAACCTTCAA 484
consensus_14789#3 ------------------------------------------------------------
consensus_14789#4 GTGTGCTG----TACTAATCATGCTGCTTTTGCTTAAGCACTCCGGTTTGTAGA-TTGTG 320
consensus_14789#5 GGTCTTTG----T-CTAGGTGTGTT-CTCTTCCATATGATCGGGGGGGGGGGGGCTTATA 311
consensus_14789#0 GGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGG 772
consensus_14789#2 GGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGG 404
consensus_14789#1 CAAGTGAACCTGCAGAGAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGAGCTTG 544
consensus_14789#3 ------------------------------------------------------------
consensus_14789#4 ATGCAGTACACACGAACATCATTTTTTTTACC--CCCTTCTGTATATGCCTATATGGCTG 378
consensus_14789#5 CTTCTGAATCGGGCAAGATTGTTTTCCTTGTTGGTGCCTCTGATTAAGCC-----GGCTG 366
consensus_14789#0 AAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGG--GAGTTC 830
consensus_14789#2 AAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGG--GAGTTC 462
consensus_14789#1 AACAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGA--AAAGCA 602
consensus_14789#3 ------------------------------------------------------------
consensus_14789#4 GTTGGATCC--CATTCGTCAGTTAATGCAAGTTTAAAGTTGATTTAATTTTATTACGTTG 436
consensus_14789#5 CGGTAAACA--TTTGCGTTGCCTCA-GCGAGCAAATCGCGGGCTTGATTA----GCGTT- 418
consensus_14789#0 CCTAGA-TAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACT 889
consensus_14789#2 CCTAGA-TAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACT 521
consensus_14789#1 ATCACT-GG---TTTGTTTTACTGTATTATACTCCACTTCAGAATGTATGTGTGTCATAT 658
consensus_14789#3 ------------------------------------------------------------
consensus_14789#4 AGCAAAATGCTGCTCATTTGGCTTTGCAAACATCGAACCTGGTAGGGGAATGTGGACACT 496
consensus_14789#5 AGCAG-----CGCCCGTTT----CTGCGATCGCTGGGACAAATT---------------- 453
consensus_14789#0 AGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGAC 949
consensus_14789#2 AGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGAC 581
consensus_14789#1 CAGAAATAGAAACCCCCTGTTGTTATTAACAACTGATATACCTGCAACCTGCATTCACTG 718
consensus_14789#3 ------------------------------------------------------------
consensus_14789#4 GCTTAGATTGTAATTGTTCGCTAAAACTTT------------------------------ 526
consensus_14789#5 ------------------------------------------------------------
consensus_14789#0 AAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTAAAAAAAAAAAAAAAAA 1009
consensus_14789#2 AAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTATCGACTTTTGTAAAAA 641
consensus_14789#1 ATACAAAATTGTTCAATCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAA 778
consensus_14789#3 ------------------------------------------------------------
consensus_14789#4 ------------------------------------------------------------
consensus_14789#5 ------------------------------------------------------------
consensus_14789#0 AAAAAAA 1016
consensus_14789#2 A------ 642
consensus_14789#1 A------ 779
consensus_14789#3 -------
consensus_14789#4 -------
consensus_14789#5 -------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||