These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1016 fasta sequence [TTTTTGCCTTTCCCTTTTCCCTTTCCTCGCTCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGG-AGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA-ATCGTC-TCTATGAAAACAA-GGCTCAAC-TAAATTCAGTATCAATGCATCTTGG-AGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTC-AAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF311983 [TTTTTGCCTTTCCCTTTTCCCTTTCCTCGCTCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGG AGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA ATCGTC TCTATGAAAACAA GGCTCAAC TAAATTCAGTATCAATGCATCTTGG AGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTC AAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGG ] [+] EMBL CF311232 [ TTCCTCGCTCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGG AGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA ATCGTC TCTATGAAAACAA GGCTCAAC TAAATTCAGTATCAATGCATCTTGG AGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTC AAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCA ] [+] EMBL AU064175 [ TCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGNCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTNGNGT AGTGGCAGCGCAA NTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAG GCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA ATCGTC TCTATGAAAACAA GGCTCAAC TAAATTCAGTATCAATGCATCTTGGNNGAAATTGTTGCAACGGCAAAGACTGTCGGTCATCTGTC AAAAAGTGCTGAAGTTATGNAAATCGTTAACAAT ] [+] EMBL OSS13270A [ GCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCT CGGGNAGTGGCAGCGCAA CTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTA ATCGTC TCTATGAAAACAN GGCTCAAC TAAATTCAGTATCAATGCATCTTGG AGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTC AAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTNGCTGCCACCATGCAAGAA ] [-] EMBL CA763611 [ gtccaccgcCGTCCTGTTAGATCGTCTTCTATGAAACCAAGGGCCCAACGTAGATTCAGTAGCAGTGCATGTTGG AGAGATTGTTCCAACGGCAAGAACTGTCGGTCATCTGTCGAGAAGGTGC GGAGGTATGAAAATCGTTAGCAATCTAATGAGAGCTCCAGAATTGGCTCCCACCATGCAAGAATTTAGTAAAGAAATGACTAAGGCTGGTGTGATGGAAGAGATGGCCACCGATGCAGTTGATTCAGCTTTGGGCTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAACCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTAAAAAAAAAA ] [+] EMBL AU094313 [ GATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAANAGGAGGTTGNCAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATNTGGAANAGATCAGAGCNCGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTNAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTANAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174017 [ GTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCNCAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTAAAAA ] consensusID : consensus_14789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 779 fasta sequence [GGACGAGACAAGGGGGAGGAGAAGAAGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG-CAATTGCTGGGGAGACTG-CCTCTGAGCTT-CCAGA-CGCTGTCAGGAAGGAAAAGGAGAAGATGAAG-CAACCTTCAA-CAAGTGAA-CCTG-CAGAGAGAACTGCTATT-GCGGAAG-CCGT------CGATGA-CGATGA-CGAGCTTGAA-CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG-TTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT-GTGTGTCATATCAGAAATAGAAACCCCCTGTTGTTATTAAC-AACTGATATACCTGCAACCTGCATTCACTGATACAAAATTGTTCAA-TCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAAA] [+] EMBL CA767395 [GGACGAGACAAGGGGGAGGAGAAGAAGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG CAATTGCTGGGGAGACTG CCTCTGAGCTT CCAGA CGCTGTCAGGAAGGAAAGGGAGAAGATGAAG CAACCTTCAA CAAGTGAA CCTG CAGAGAGAACTGCTATT GCGGAAG CCGT CGATGA CGATGA CGAGCTTGAA CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG TTTGTTTTACTGTATTATACTCCACTTCAGAATGTATNGTGTGTCATATCAGAAATAGAAACCCCCTGTTGNTATTAACAAACTGATATACCTGCAACCTGCATTCACTGATACAAAATTGNTCAATTCTCAGTTGCAAGGGTAATTGTGTGCCCTG ] [-] EMBL CF297663 [ TCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG CAATTGCTGGGGAGACTG CCTCTGAGCTT CCAGA CGCTGTCAGGAAGGAAAAGGAGAAGATGAAG CAACCTTCAA CAAGTGAA CCTG CAGAGAGAACTGCTATT GCGGAAG CCGTCGATGACGATGA CGATGA CGAGCTTGAA CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG TTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT GTGTGTCATATCAGAAATAGAAACCCCTTCTTGTTATTAACAAACTGATATACCTGCAACCTGCATTCACTGATACAAAATTGTTCAA TCTCAGTTGCAAGGGTAAaaa ] [+] EMBL BI803489 [ GATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG C ATTGCTGGGGAGACTG CCTCTGAGCTT CCAGA CGCTGTCAGGAAGGAAAAGGAGAAGATGAAG CAACCTTCAA CAAGTGAA CCTG CAGAGAGAACTGCTATT GCGGAAG CCGT CGATGA CGATGA CGAGCTTGAA CAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG TTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT GTGTGTCATATCAGAAATAGAAACCCCCTGTTGTTATTAAC AACTGATATACCTGCAACCTGCATTCACTGATAC AAATTGTTCAA TCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAAA] [+] EMBL BI804117 [ GATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTG CAATTGCTGGGGAGACTG CCTCTGAGCTT CCAGA CGCTGTCAGGAAGGAAAAGGAGAAGATGAAG CAACCTTCAA CAAGTGAA CCTG CAGAGAGAACTGCTATT GCGGAAG CCGT CGATGA CGATGA CGAGCTTGAA CAGATAAGGGAAAGGCTCGCC AAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGG TTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT GTGTGTCATATCAGAAATAGAAACCCCCTGTTGTTATTAAC AACTGATATACCTGCAACCTGCATTCACTGATAC AAATTGTTCAA TCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAAA] [+] EMBL BI803237 [ ATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACCAGGTCCTCTCTGCCAATTGCTGGGGAGACTGCCCTCTGAGCTTCCCAGACCGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCCAACCTTCAACCAAGTGAACCCTGCCAGAGAGAACTGCTATTGGCGGAAGCCCGT CGATGACCGATGACCGAGCTTGAACCAGATAAGGGAAAGGCTCGCCCAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGGCTTTGTTTTACTGTATTATACTCCACTTCAGAATGTAT GTGTGTCATATCAGAAATAGAAACCCCCTGTTGTTATTAAC AACTGATATACCTGC ACCTGCATTCACTGATACCAAATTGTTCAA TCTCAGTTGCCAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAAA] consensusID : consensus_14789#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 642 fasta sequence [GGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTATCGACTTTTGTAAAAAA] [-] EMBL CF311984 [GGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGCAACGGCAAGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGTTATGAAAATCGTTAACAATCTAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTATCGACTTTTGTAAAAA ] [-] EMBL CF311233 [ CCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGGCTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTCAGCTTTGGACTCTGAGGACATGGAGGAGGAAATTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGACTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCAGGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGGAAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGGGAGTTCCCTAGATAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACTAGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGACAAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTATCGACTTTTGTAAAAAA] consensusID : consensus_14789#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence [GTCTGCTGCTTCCGAATTCCGATCGGAGAGCAGCTGGACTCCGGTGAGGGATCATGGAGGCGGTGAAGAGCCTCCTCAAGCCCAAGCCGACGCCGCAGCAGCAGCTTCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAAGGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAG] [+] EMBL CF297662 [GTCTGCTGCTTCCGAATTCCGATCGGAGAGCAGCTGGACTCCGGTGAGGGATCATGGAGGCGGTGAAGAGCCTCCTCAAGCCCAAGCCGACGCCGCAGCAGCAGCTTCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAAGGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAG] [+] EMBL CA998944 [ CAGCTTCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAA GGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCCAGGACTGTTGGCC ] consensusID : consensus_14789#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [GGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGTGTGCTGTACTAATCATGCTGCTTTTGCTTAAGCACTCCGGTTTGTAGATTGTGATGCAGTACACACGAACATCATTTTTTTTACCCCCTTCTGTATATGCCTATATGGCTGGTTGGATCCCATTCGTCAGTTAATGCAAGTTTAAAGTTGATTTAATTTTATTACGTTGAGCAAAATGCTGCTCATTTGGCTTTGCAAACATCGAACCTGGTAGGGGAATGTGGACACTGCTTAGATTGTAATTGTTCGCTAAAACTTT] [+] EMBL AK111095 [GGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAGAGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGGTGTGCTGTACTAATCATGCTGCTTTTGCTTAAGCACTCCGGTTTGTAGATTGTGATGCAGTACACACGAACATCATTTTTTTTACCCCCTTCTGTATATGCCTATATGGCTGGTTGGATCCCATTCGTCAGTTAATGCAAGTTTAAAGTTGATTTAATTTTATTACGTTGAGCAAAATGCTGCTCATTTGGCTTTGCAAACATCGAACCTGGTAGGGGAATGTGGACACTGCTTAGATTGTAATTGTTCGCTAAAACTTT] consensusID : consensus_14789#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [TCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGGTTCGCTCCCCCATCTCCTCCTCCTCCCCCGACGCGCGACCCGACCTTCACGCGAGGTCTTTGTCTAGGTGTGTTCTCTTCCATATGATCGGGGGGGGGGGGGCTTATACTTCTGAATCGGGCAAGATTGTTTTCCTTGTTGGTGCCTCTGATTAAGCCGGCTGCGGTAAACATTTGCGTTGCCTCAGCGAGCAAATCGCGGGCTTGATTAGCGTTAGCAGCGCCCGTTTCTGCGATCGCTGGGACAAATT] [-] EMBL AK109231 [TCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGGTTCGCTCCCCCATCTCCTCCTCCTCCCCCGACGCGCGACCCGACCTTCACGCGAGGTCTTTGTCTAGGTGTGTTCTCTTCCATATGATCGGGGGGGGGGGGGCTTATACTTCTGAATCGGGCAAGATTGTTTTCCTTGTTGGTGCCTCTGATTAAGCCGGCTGCGGTAAACATTTGCGTTGCCTCAGCGAGCAAATCGCGGGCTTGATTAGCGTTAGCAGCGCCCGTTTCTGCGATCGCTGGGACAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14789#0 TTTTTGCCTTTCCCTTTTCCCTTTCCTCGCTCCTCGTCCTGTCTGGCTGTCTCTCCTCCT 60 consensus_14789#2 ------------------------------------------------------------ consensus_14789#1 ------------------------------------------------------------ consensus_14789#3 ------------------------------------------------------------ consensus_14789#4 ------------------------------------------------------------ consensus_14789#5 ------------------------------------------------------------ consensus_14789#0 CCCCGCGTGGCGGCGTCGGTAGATACCGCGTGATTCATCCGGCGGCGGCGAGCTCCGCCG 120 consensus_14789#2 ------------------------------------------------------------ consensus_14789#1 ------------------------------------------------------------ consensus_14789#3 ------GTCTGCTGCTTCCGAATTCCGATCGGAGAGCAGCTGGACTCCGGTGAGGGATCA 54 consensus_14789#4 ------------------------------------------------------------ consensus_14789#5 ------------------------------------------------------------ consensus_14789#0 ATGGAGAAGGTGAAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAG 180 consensus_14789#2 ------------------------------------------------------------ consensus_14789#1 ------------------------------------------------------------ consensus_14789#3 TGGAGGCGGTGAAGAGCCTCCTCAAGCCCAAGCCGACGCCGCAGCAGCAGCTTCGCGAGT 114 consensus_14789#4 ------------------------------------------------------------ consensus_14789#5 ------------------------------------------------------------ consensus_14789#0 TGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGATGTGCAG 240 consensus_14789#2 ------------------------------------------------------------ consensus_14789#1 --------------------------------------------GGACGAGACA---AGG 13 consensus_14789#3 GGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGATGTGCAGA 174 consensus_14789#4 ------------------------------------------------------------ consensus_14789#5 ------------------------------------------------------------ consensus_14789#0 AGGGAGGAGAAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGA 300 consensus_14789#2 ------------------------------------------------------------ consensus_14789#1 GGGAGGAGAAGAAGG-TGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGA 72 consensus_14789#3 GGGAGGAGAAGAAGGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGA 234 consensus_14789#4 ------------------------------------------------------------ consensus_14789#5 ------------------------------------------------------------ consensus_14789#0 TCCGCAAAGGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT 360 consensus_14789#2 ------------------------------------------------------------ consensus_14789#1 TCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTAC 132 consensus_14789#3 TCGGCCAAGGCGCTGGCCAAGGAGGTGGTGAGGTCCAGGAAGGCGGTCAACCGCCTCTAC 294 consensus_14789#4 ------------------------------------------------------------ consensus_14789#5 ------------------------------------------------------------ consensus_14789#0 GAAAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGCAACGGCA 420 consensus_14789#2 --------GGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTGTTGCAACGGCA 52 consensus_14789#1 GAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCC 192 consensus_14789#3 GAGAACAAGGCCCAGCTCAACTCCATCTCCATGCACCTTGGCGAGATCGTAGCTACTGCC 354 consensus_14789#4 ----------------------GGCTGTCTCTCCTCCTCCCCGCG-TGGCGGCGTCGGTA 37 consensus_14789#5 --------TCCTCGTCCTGTCTGGCTGTCTCTCCTCCTCCCCGCG-TGGCGGCGTCGGTA 51 * ** * * ** * * * ** * * consensus_14789#0 AGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGT-----TATGAAAATCGTTAACAATC 475 consensus_14789#2 AGAACTGTCGGTCATCTGTCAAAAAGTGCTGAAGT-----TATGAAAATCGTTAACAATC 107 consensus_14789#1 AGGACTGTTGGCCATTTATCCAAGAGTACTGAGGT-----GATGAAACTTGTCAATAACC 247 consensus_14789#3 AGGACTGTTGGCCATTTATCCAAGAGTACTGAGGT-----GATGAAACTTGTCAATAACC 409 consensus_14789#4 GATACCGC--GTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTC 95 consensus_14789#5 GATACCGC--GTGATTCATCCGGCGGCGGCGAGCTCCGCCGATGGAGAAGGTGAAGGGTC 109 ** * * ** ** * ** * *** * ** ** * consensus_14789#0 TAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGAATTTAGTAAAGAAATGACAAAGG 535 consensus_14789#2 TAATGAAAGCTCCAGAATTGGCTGCCACCATGCAAGCATTTAGTAAAGAAATGACAAAGG 167 consensus_14789#1 TTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGG 307 consensus_14789#3 TTATGAAAGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGG 469 consensus_14789#4 TGCTGAAGCCGC-------GGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAG 148 consensus_14789#5 TGCTGAAGCCGC-------GGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAG 162 * **** * * *** * * ** * * ** * * * consensus_14789#0 CTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTC-AGCTTTGGACTCTGAGGAC 594 consensus_14789#2 CTGGTGTGATGGAAGAGATGGTCAACGATGCAGTTGATTC-AGCTTTGGACTCTGAGGAC 226 consensus_14789#1 CTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTC-AGCGCTGGACAATGAGGAC 366 consensus_14789#3 CTGGTGTAATGGAAGAAATGGTGAACGATGCTGTGGATTC-AGCGCTGGACAATGAGGAC 528 consensus_14789#4 CTC-CGCAACGAGTGCCGCG-TCCTCGAC-CGCCAGATCCGAGATGTGCAGAGGGAGGAG 205 consensus_14789#5 CTC-CGCAACGAGTGCCGCG-TCCTCGAC-CGCCAGATCCGAGGTTCGCTCCCCCA---- 215 ** * * * * * * *** * *** * ** * * consensus_14789#0 ATGGAGGAGGAAA--TTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGA 652 consensus_14789#2 ATGGAGGAGGAAA--TTGAAGAGGAGGTTGACAAGGTTCTTGCTTCAGTAGCTGGGGAGA 284 consensus_14789#1 ATTGAGGAGGAGA--TTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAGA 424 consensus_14789#3 ATTGAGGAGGAGA--TTGAAGAGGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAG- 585 consensus_14789#4 AAGAACGTGGAGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG 265 consensus_14789#5 ---------------TCTCCTCCTCCTCCCCCGACGCGCGACCCGACC---TTCACGCGA 257 * * * * * consensus_14789#0 CTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCA 712 consensus_14789#2 CTGCCTCACAGCTACCCGATGCTGTGAGGAAACAGAGGATAAACCAAGCTTCAACAAGCA 344 consensus_14789#1 CTGCCTCTGAGCTTCCAGACGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCAACCTTCAA 484 consensus_14789#3 ------------------------------------------------------------ consensus_14789#4 GTGTGCTG----TACTAATCATGCTGCTTTTGCTTAAGCACTCCGGTTTGTAGA-TTGTG 320 consensus_14789#5 GGTCTTTG----T-CTAGGTGTGTT-CTCTTCCATATGATCGGGGGGGGGGGGGCTTATA 311 consensus_14789#0 GGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGG 772 consensus_14789#2 GGGTCCCAGAAGAGCGACAAGCTGTTGCTGAGGGCGCTGATGATGATGAGGAAGATCTGG 404 consensus_14789#1 CAAGTGAACCTGCAGAGAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGAGCTTG 544 consensus_14789#3 ------------------------------------------------------------ consensus_14789#4 ATGCAGTACACACGAACATCATTTTTTTTACC--CCCTTCTGTATATGCCTATATGGCTG 378 consensus_14789#5 CTTCTGAATCGGGCAAGATTGTTTTCCTTGTTGGTGCCTCTGATTAAGCC-----GGCTG 366 consensus_14789#0 AAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGG--GAGTTC 830 consensus_14789#2 AAGAGATCAGAGCACGGCTTGCTAAAGTGAGGTCATAACATTCTAACTTTGG--GAGTTC 462 consensus_14789#1 AACAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGA--AAAGCA 602 consensus_14789#3 ------------------------------------------------------------ consensus_14789#4 GTTGGATCC--CATTCGTCAGTTAATGCAAGTTTAAAGTTGATTTAATTTTATTACGTTG 436 consensus_14789#5 CGGTAAACA--TTTGCGTTGCCTCA-GCGAGCAAATCGCGGGCTTGATTA----GCGTT- 418 consensus_14789#0 CCTAGA-TAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACT 889 consensus_14789#2 CCTAGA-TAACATCCAGACCAATCTATGATAGATTGGCCTCGGTTGACCAAGTTTGAACT 521 consensus_14789#1 ATCACT-GG---TTTGTTTTACTGTATTATACTCCACTTCAGAATGTATGTGTGTCATAT 658 consensus_14789#3 ------------------------------------------------------------ consensus_14789#4 AGCAAAATGCTGCTCATTTGGCTTTGCAAACATCGAACCTGGTAGGGGAATGTGGACACT 496 consensus_14789#5 AGCAG-----CGCCCGTTT----CTGCGATCGCTGGGACAAATT---------------- 453 consensus_14789#0 AGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGAC 949 consensus_14789#2 AGCAATGTACTGTTGTATACTTGTATAGTAAACATCCTGTATCTTGATCTGTCTAGAGAC 581 consensus_14789#1 CAGAAATAGAAACCCCCTGTTGTTATTAACAACTGATATACCTGCAACCTGCATTCACTG 718 consensus_14789#3 ------------------------------------------------------------ consensus_14789#4 GCTTAGATTGTAATTGTTCGCTAAAACTTT------------------------------ 526 consensus_14789#5 ------------------------------------------------------------ consensus_14789#0 AAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTAAAAAAAAAAAAAAAAA 1009 consensus_14789#2 AAAAAAAAATGAATAATGTAATCTCCTGGTGGCTCTATCGAGTATCGACTTTTGTAAAAA 641 consensus_14789#1 ATACAAAATTGTTCAATCTCAGTTGCAAGGGTAATTGTGTGCCCTGAAATTTGTCTAAAA 778 consensus_14789#3 ------------------------------------------------------------ consensus_14789#4 ------------------------------------------------------------ consensus_14789#5 ------------------------------------------------------------ consensus_14789#0 AAAAAAA 1016 consensus_14789#2 A------ 642 consensus_14789#1 A------ 779 consensus_14789#3 ------- consensus_14789#4 ------- consensus_14789#5 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||