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Oryza sativa
cluster # 14797 cluster # 14797       Sequences # 18       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14797#0 length = 959 sequences # 13  
consensus_14797#1 length = 583 sequences # 1  
consensus_14797#2 length = 496 sequences # 1  
consensus_14797#3 length = 447 sequences # 3  

consensusID : consensus_14797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 959
fasta sequence
                              [GAAGCGTCCCTGAACTCTGAAGAAATCAAGAAATCCAAAGGCAGCAGCAATGGCGGCGA-GGTGCCTCTCTTCTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGCCATGGCCT-CCCCGCC-CGTCCC-CTCCTCCGC-CGCCCCTCGCCGCCGT-CCCGGGACCCGCCTTTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGT-CCCAGGAACCTGCTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGC-TTGGTCTTAAGGTGAATCCTG-CTAGG-CCAACC-GACAAGCTTCC-TTA-CAGA-GGTGCTTGG-CTCTGGGTT-GGTTCTGAGATGATTCACTTGATGGAG-CTGCCAAATCCCGATCCATTGAC-T-GGGCGCCCAGAGCATGGGGGACGTGAT-CGTCATACCTGTAT-GGCGATCAAAGA-TGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACACACTTAGCAAATCAGGGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGCCCTACTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATAGACGAATACTGTAAGCTCCCACTTTCAGATTAGTACACATATACTCCTCTCGTACTGTTAATATCCACTGTATCCTTCAGATATTAATTA-CCGAATCACACCATGCAGTTGCCACTTGC]

[+] EMBL AK120286             [GAAGCGTCCCTGAACTCTGAAGAAATCAAGAAATCCAAAGGCAGCAGCAATGGCGGCGA GGTGCCTCTCTTCTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGCCATGGCCT CCCCGCC CGTCCC CTCCTCCGC CGCCCCTCGCCGCCGT CCCGGGACCCGCCTTTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGT CCCAGGAACCTGCTTATGGAGTTGTTAGCGTTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGC TTGGTCTTAAGGTGAATCCTG CTAGG CCAACC GACAAGCTTCC TTA CAGA GGTGCTTGG CTCTGGGTT GGTTCTGAGATGATTCACTTGATGGAG CTGCCAAATCCCGATCCATTGAC T GGGCGCCCAGAGCATGGGGGACGTGAT CGTCATACCTGTAT GGCGATCAAAGA TGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACACACTTAGCAAATCAGGGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGCCCTACTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATAGACGAATACTGTAAGCTCCCACTTTCAGATTAGTACACATATA                                                                             ]
[+] EMBL OSS15285A            [                           AAGAAATCCAAAGGCAGCAGCAATGGCNGCGANGGTGCCTCTCTTCTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGCCATGG CT CCCCNCC CGTCCC CTCCTCCGC CGCCCCTCGCCGCCGT CCCGGGACCCGCCTTTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGC T CCCAGGAACCTGCTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGC TTGGTCTTAAGGTGAATCCTG CTAGG CCAACC GACAAGCTTCC TTA CAGA GGTGCTTNG CTCTGGGTT GGTTCTGAGATGATTCACTTGATGGAG CTGCCAAATCCCGATCCATTGAC T GGGCG CCAGAG ATNGGGGACGTGAT CGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU062853             [                             GAAATCCAAAGGCAGCAGCAATGGCGGCGA GGTGCCTCTCTTCTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGCCATGGCCT CCCCGCC CGTCCC CTCCTCCGC CGCCCCTCGCCGCCGT CCCGGGACCCGCCTTTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGT CCCAGGAACCTGCTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGC TTGGTCTTAAGGTGAATCCTG CTAGG CCAACC GACAAGCTTCC TTA CAGA GGTGCTTGG TTCTGGGTT GGTTCTGAGATGATTCACTTGATGGAGNTTGCCAAATNCCGATCCATTGACTT GGGCG CCAGAGCATGGGGGACGTGATCCGTNATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSS11580A            [                              AAATCCAAAGGCAGCAGCAATGGCGGCGA GGTGCCTCTCTTCTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGCCATGGCCT CCCCGCC CGTCCC CTCCTCCGC CGCCCCTCGCCGCCGT CCCGGGACCCGCCTTTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGT CCCAGGAACCTGTTTATGGAGTTGTTAGCATTCANCATGTTGGGATNCTATGTGAAAATCTTG AAGGTCAATGG CTTCTACAAAGATCTTC TTTGNCTTAAGGTG ATCCT  CTAAG GCAA C GAAAAG TTTC TTA NA N GGT CTTTG CTCTTGGTT GG TCTTAGATGATT ACTTTATGGGG C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU162683             [                                     AAGGCAGCAGCAATGGCGGCGA GGTGCCTCTCTTCTCTCGCCCTCCTCNNCNCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGCCATGGCCT CCCCGCC CGTCCC CTCCTCCGC CGCCCCTCGCCGCCGT CCCGGGACCCGCCTTTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGT CCCAGGAACCTGCTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGC TTGGTCTTAAGGTGAATCCTG CTAGG CCAACC GACAAGCTTCC TTA CAGA GGTGCTTGG CTCTGGGTT GGTTCTGAGATGATTCACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB683219             [                                                                CCTCTCTTCTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGCCATGGCCT CCCCGCC CGTCCC CTCCTCCGC CGCCCCTCGCCGCCGT CCCGGGACCCGCCTTTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGT CCCAGGAACCTGCTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGC TTGGTCTTAAGGTGAATCCTG CTAGG CCAACC GACAAGCTTCC TTA CAGA GGTGCTTGG CTCTGGGTT GGTTCTGAGATGATTCACTTGATGGAG CTGCCAAATCCCGATCCATTGAC T GGGCGCCCAGAGCATGGGGGACGTGAT CGTCATACCTGTAT GGCGATCAAAGA TGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACACACTTAGCAAATCAGGGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGCCCTACTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTG                                                                                                                                    ]
[+] EMBL AU175149             [                                                                        CTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGCCATGGCCT CCCCGCC CGTCCC CTCCTCCGC CGNCCCTCGNCGCCGT CCCGGGACCCGCCTTTCGGTGGCCACCGGCGGGGAGCAACTCGTCANGGCGCAGGAGGCGT CCCAGGAACCTGCTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATNTTGAAAGGTCAATGGCCTTCTACAAAGATCTGC TTGGTCTTAAGGTGAATCCTG CTAGG CCAACC GACAAGCTTCC TTA CAGA GGTGCTTGG CTCTGGGTTGGGTTCTGAGATGATTCACTTGATGGAG CTGNCAAATCCCGATCCATTGAC TGGGGCGGCCAGAGCATGGGGGACGTGAT CGTCATAACTGGATGGGCGATCAAAGATTGTGTTGAAGTTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU175150             [                                                                                                                      GGCCATGNCTTCCCCCGCCTGGTCCCTTTTTTCCGCTTTTTCNTCGCCGNCTTCCCCGGGACCCGCCTTTCGTTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGTCCCCAGGAACCTGCTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTG AAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGC TTGGTCTTAAGGTGAATCCTG CTAGG CCAACC GACAAGCTTCC TTA CAGA GGTGCTTGG CTCTGGGTT GGTTCTGAGATGATTCACTTGATGGAG CTGCCAAATCCCGATCCATTGAC T GGGCGCCCAGAGCATGGGGGACGTGAT CGTCATACCTGTAT GGCGATCAAAGA TGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACACACTTAGCAAATCAGGGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGCCCTACTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAaaaaaaaa                                                                                                                                                                                                        ]
[+] EMBL BI795846             [                                                                                                                                                                                                                                                                                                                         CTACCAAGATCTGCGTTGGTCTTAAGGTGAATCCTGCCTAGGCCCAACCGGACAAGCTTCCTTTACCAGAGGGTGCTTGGCCTCT GGTT GGTTCTGAGATGATTCACTTGATGGAG TTGCC AATCCCGATCC TTGAC T GGGCGCCCAGAGCATGGGGGACGTGAT CGTCATACCTGTAT GGCGATCAAAGA TGTGTTGAAGTTAAAAGAAATCTTTGAC AAGCCGGAATCAAATACACACTTAGCAAATCAGGGCGACCAGCAATATTTGCTCGGGACCCGGACGGGAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGCCCTACTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTC AACATATTGTTGTTACTGATAGACGAATACTGTAAGCTCCCACTTTCAGATTAGTACACATATACTCCTCTCGTACTGTTAAaa                                                         ]
[+] EMBL AU162953             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGGAATCAAATACACACTTAGCAAATCAGGGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGCCCTACTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATAa                                                                                                                       ]
[+] EMBL OSS12540A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGGAATCAAATACACACTTAGCAAATCAGGGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGCCCTACTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATA                                                                                                                        ]
[+] EMBL AU164269             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gtgnTTAAGAAAAAACTGATTGTACANATCANTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATAGACGAATACTGTAAGCTCCCACTTTCAGATTAGTACANANATACTCCTCTCGTACTGTTAATATCCACTGTATCCTTCAGATATTAATTA CCGAATCACACCATGCAGTTGCCACTT  ]
[+] EMBL AU164274             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cngngnttnAAGAAAAAACTGATTGTACATATCATTATATCGGNTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATAGACGAATACTGTAAGCTCCCACTTTCAGATTAGTACACATATACTCCTCTCGTACTGTTAATATCCACTGTATCCTTCAGATATTAATTACCCGAATCACACCATGCAGTTGCCACTTGC]


>consensus_14797#0 GAAGCGTCCCTGAACTCTGAAGAAATCAAGAAATCCAAAGGCAGCAGCAATGGCGGCGAG GTGCCTCTCTTCTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGC CATGGCCTCCCCGCCCGTCCCCTCCTCCGCCGCCCCTCGCCGCCGTCCCGGGACCCGCCT TTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGTCCCAGGAACCTGC TTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAAT GGCCTTCTACAAAGATCTGCTTGGTCTTAAGGTGAATCCTGCTAGGCCAACCGACAAGCT TCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGCC AAATCCCGATCCATTGACTGGGCGCCCAGAGCATGGGGGACGTGATCGTCATACCTGTAT GGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACAC ACTTAGCAAATCAGGGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGA GTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGCCCTAC TGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGGTTAAA AGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCCTTGAA ATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATA GACGAATACTGTAAGCTCCCACTTTCAGATTAGTACACATATACTCCTCTCGTACTGTTA ATATCCACTGTATCCTTCAGATATTAATTACCGAATCACACCATGCAGTTGCCACTTGC



consensusID : consensus_14797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [GAATCCTGCTAGGCCAACCGACAAGCTTCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGCCAAATCCCGATCCATTGACTGGGCGCCCAGAGCATGGGGGACGTGATCGTCATACCTGTATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGTACTAATGAATTTTTACTTTATTATCTGTTGCTTATACAGTGCACTAGCAACAACTGATAAAGAGTAAATGCCCTGTTTCTCTGCTTGTTGTCTTCATAGCCTTATTAAAAAACCACTGATCTTTACAGTAAAACCTACTAAGACAGCAGGCTATTTTTTTTCTGATGTGGTAAATTGAAAGCCTGCCCTGTTTGGAGAAATTTATAGATGTCCTGAAAACCTCATCCTTTGTTTTTGGTAAATTTTACATACCACCATTGCTAGTCATCCAAAAGGTCTGTTGTCTTGAAAGTAATACTCATTANNCTACTTNNNAGTTCTAGTCAATTAAGATCATAGCATCGTCCATTCACATCCGTATAATGTTNNNNNNCATTTTNCNATTTT]

[+] EMBL CF196470             [GAATCCTGCTAGGCCAACCGACAAGCTTCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGCCAAATCCCGATCCATTGACTGGGCGCCCAGAGCATGGGGGACGTGATCGTCATACCTGTATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGTACTAATGAATTTTTACTTTATTATCTGTTGCTTATACAGTGCACTAGCAACAACTGATAAAGAGTAAATGCCCTGTTTCTCTGCTTGTTGTCTTCATAGCCTTATTAAAAAACCACTGATCTTTACAGTAAAACCTACTAAGACAGCAGGCTATTTTTTTTCTGATGTGGTAAATTGAAAGCCTGCCCTGTTTGGAGAAATTTATAGATGTCCTGAAAACCTCATCCTTTGTTTTTGGTAAATTTTACATACCACCATTGCTAGTCATCCAAAAGGTCTGTTGTCTTGAAAGTAATACTCATTANNCTACTTNNNAGTTCTAGTCAATTAAGATCATAGCATCGTCCATTCACATCCGTATAATGTTNNNNNNCATTTTNCNATTTT]


>consensus_14797#1 GAATCCTGCTAGGCCAACCGACAAGCTTCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTC TGAGATGATTCACTTGATGGAGCTGCCAAATCCCGATCCATTGACTGGGCGCCCAGAGCA TGGGGGACGTGATCGTCATACCTGTATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAAT CTTTGACAAAGCCGGTACTAATGAATTTTTACTTTATTATCTGTTGCTTATACAGTGCAC TAGCAACAACTGATAAAGAGTAAATGCCCTGTTTCTCTGCTTGTTGTCTTCATAGCCTTA TTAAAAAACCACTGATCTTTACAGTAAAACCTACTAAGACAGCAGGCTATTTTTTTTCTG ATGTGGTAAATTGAAAGCCTGCCCTGTTTGGAGAAATTTATAGATGTCCTGAAAACCTCA TCCTTTGTTTTTGGTAAATTTTACATACCACCATTGCTAGTCATCCAAAAGGTCTGTTGT CTTGAAAGTAATACTCATTANNCTACTTNNNAGTTCTAGTCAATTAAGATCATAGCATCG TCCATTCACATCCGTATAATGTTNNNNNNCATTTTNCNATTTT



consensusID : consensus_14797#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence
                              [CTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGCTTGGTCTTAAGGTGAATCCTGCTAGGCCAACCGACAAGCTTCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGCCAAATCCCGATCCATTGACTGGGCGCCCAGAGCATGGGGGACGTGATCGTCATACCTGTATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACACACTTAGCAAATCANNGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCNNGNATTTTCNNNTAGNNGNGATCATAGCCCTACTGTNNNNNCCAGTNNCCGGTTAANNNNNAACTNNNNNNNNNNATCATTATANNNNNTAAAAGNGNNNNNNATGAT]

[+] EMBL CF196799             [CTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAATGGCCTTCTACAAAGATCTGCTTGGTCTTAAGGTGAATCCTGCTAGGCCAACCGACAAGCTTCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGCCAAATCCCGATCCATTGACTGGGCGCCCAGAGCATGGGGGACGTGATCGTCATACCTGTATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACACACTTAGCAAATCANNGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGGAGTTCACACAAGTGTAGAAGCTGAACCNNGNATTTTCNNNTAGNNGNGATCATAGCCCTACTGTNNNNNCCAGTNNCCGGTTAANNNNNAACTNNNNNNNNNNATCATTATANNNNNTAAAAGNGNNNNNNATGAT]


>consensus_14797#2 CTTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAA TGGCCTTCTACAAAGATCTGCTTGGTCTTAAGGTGAATCCTGCTAGGCCAACCGACAAGC TTCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGC CAAATCCCGATCCATTGACTGGGCGCCCAGAGCATGGGGGACGTGATCGTCATACCTGTA TGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGAATCAAATACA CACTTAGCAAATCANNGCGACCAGCAATATTTGCTCGGGACCCGGACGGAAATGCACTGG AGTTCACACAAGTGTAGAAGCTGAACCNNGNATTTTCNNNTAGNNGNGATCATAGCCCTA CTGTNNNNNCCAGTNNCCGGTTAANNNNNAACTNNNNNNNNNNATCATTATANNNNNTAA AAGNGNNNNNNATGAT



consensusID : consensus_14797#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 447
fasta sequence
                              [AAATCCCGATCCCATTGAACTGGNCNCCCCAGAGCATGGGGGACNTGATCGTCATACCTGTATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCCGGAATCCAAATACACACTTAGCAAATCCA-GGGCGACCAGCATATTTGCTCGGGACCCGGACGGAAATG-CA-CTGGAGTTCACA-CAAGT-GTAGAAGCTGAAC-CAAGAATTTTCAACTAGAAGAGATCATAGCC-CT-ACTGTAGTTACCAGTATCC-GGTTAAGAAAAAACTGATTGTACATATCATTATATC-GGTTAAAAGGGTACCCCCTGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACC-CCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU056422             [AAATCCCGATCCCATTGAACTGGNCNCCCCAGAGCATGGGGGACNTGATCGTCATACCTGTATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCCGGAATCCAAATACACACTTAGCAAATCCA GGGCGACCAGCATATTTGCTCGGGACCCGGACGGAAATG CA CTGGAGTTCACA CAAGT GTAGAAGCTGAAC CAAGAATTTTCAACTAGAAGAGATCATAGCC CT ACTGTAGTTACCAGTATCC GGTTAAGAAAAAACTGATTGTACATATCATTATATC GGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACC CCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTACTGATAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI810910             [                               GACCAT GGGGACGTGATCGTCATACCTGTATGGCGATCCAAGATGTGTTGAAGTTAAAAGAAATCTTTGACCAA CCCGGAATCC AATACCCCCTTA CCAATCCACGGGCGACCCCAATATTTGCTCGGGACCCGGACGGAAATGCCACCTGGAGTTCACACCCAGT GTAGAAGCTGAAC CCAGAATTTTCAACTAGAAGAGATCATAGCC CT ACTGTAGTTACCCGTATCC GGTTAAGAAAAAACTGATTGTACATATCCTTATATC GGTTAAAAGGGTACCCCCTGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACC CCTTGAAATATTCTCCCGTTTGGTTTGTACTATTATTCATTATTCCAACCTATTGTTGTTACTGATAAAAAAAAAA             ]
[+] EMBL BI810937             [                                                                                                                                                                    ACCCGG CGGAAATG CA CTGGAGTTCACA CAAGTGGTAGAA CTGAACACAAGAATTTTCAACTAGAAGAGATCATAGCCACTAACTGTAGTTACCAGTATCCAGGGTAAGAAAAAACTGATTGTACATATCATTATATCAGGTTAAAAGGGTACCCCCTGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCACCTTG                                                                                    ]


>consensus_14797#3 AAATCCCGATCCCATTGAACTGGNCNCCCCAGAGCATGGGGGACNTGATCGTCATACCTG TATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCCGGAATCCAAA TACACACTTAGCAAATCCAGGGCGACCAGCATATTTGCTCGGGACCCGGACGGAAATGCA CTGGAGTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAACTAGAAGAGATCATAGC CCTACTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGATTGTACATATCATTATATCGG TTAAAAGGGTACCCCCTGATGATATATTGATAGTGAAGTTGTATGTTGGTATTGGACCCC TTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATTATTCAAACATATTGTTGTTAC TGATAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14797#0      GAAGCGTCCCTGAACTCTGAAGAAATCAAGAAATCCAAAGGCAGCAGCAATGGCGGCGAG 60
consensus_14797#3      ------------------------------------------------------------
consensus_14797#2      ------------------------------------------------------------
consensus_14797#1      ------------------------------------------------------------
                                                                                   

consensus_14797#0      GTGCCTCTCTTCTCTCGCCCTCCTCTCCCCCTCCCCCTCCAGCTCCGGGAAGGTGTCGGC 120
consensus_14797#3      ------------------------------------------------------------
consensus_14797#2      ------------------------------------------------------------
consensus_14797#1      ------------------------------------------------------------
                                                                                   

consensus_14797#0      CATGGCCTCCCCGCCCGTCCCCTCCTCCGCCGCCCCTCGCCGCCGTCCCGGGACCCGCCT 180
consensus_14797#3      ------------------------------------------------------------
consensus_14797#2      ------------------------------------------------------------
consensus_14797#1      ------------------------------------------------------------
                                                                                   

consensus_14797#0      TTCGGTGGCCACCGGCGGGGAGCAACTCGTCACGGCGCAGGAGGCGTCCCAGGAACCTGC 240
consensus_14797#3      ------------------------------------------------------------
consensus_14797#2      -----------------------------------------------------------C 1
consensus_14797#1      ------------------------------------------------------------
                                                                                   

consensus_14797#0      TTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAAT 300
consensus_14797#3      ------------------------------------------------------------
consensus_14797#2      TTATGGAGTTGTTAGCATTCACCATGTTGGGATCCTATGTGAAAATCTTGAAAGGTCAAT 61
consensus_14797#1      ------------------------------------------------------------
                                                                                   

consensus_14797#0      GGCCTTCTACAAAGATCTGCTTGGTCTTAAGGTGAATCCTGCTAGGCCAACCGACAAGCT 360
consensus_14797#3      ------------------------------------------------------------
consensus_14797#2      GGCCTTCTACAAAGATCTGCTTGGTCTTAAGGTGAATCCTGCTAGGCCAACCGACAAGCT 121
consensus_14797#1      ---------------------------------GAATCCTGCTAGGCCAACCGACAAGCT 27
                                                                                   

consensus_14797#0      TCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGCC 420
consensus_14797#3      ------------------------------------------------------------
consensus_14797#2      TCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGCC 181
consensus_14797#1      TCCTTACAGAGGTGCTTGGCTCTGGGTTGGTTCTGAGATGATTCACTTGATGGAGCTGCC 87
                                                                                   

consensus_14797#0      AAATCCCGATCC-ATTGA-CTGGGCGCCC-AGAGCATGGGGGACGTGATCGTCATACCTG 477
consensus_14797#3      AAATCCCGATCCCATTGAACTGGNCNCCCCAGAGCATGGGGGACNTGATCGTCATACCTG 60
consensus_14797#2      AAATCCCGATCC-ATTGA-CTGGGCGCCC-AGAGCATGGGGGACGTGATCGTCATACCTG 238
consensus_14797#1      AAATCCCGATCC-ATTGA-CTGGGCGCCC-AGAGCATGGGGGACGTGATCGTCATACCTG 144
                       ************ ***** **** * *** ************** ***************

consensus_14797#0      TATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCC-GGAATC--AA 534
consensus_14797#3      TATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCCGGAATCC-AA 119
consensus_14797#2      TATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCC-GGAATC--AA 295
consensus_14797#1      TATGGCGATCAAAGATGTGTTGAAGTTAAAAGAAATCTTTGACAAAGCCGGTACTAATGA 204
                       ************************************************* * * *    *

consensus_14797#0      ATACACACTTAGCAAATC---------AGGGCG-ACCAGCAATATTTGCTCGGGACCCGG 584
consensus_14797#3      ATACACACTTAGCAAATCC--------AGGGCG-ACCAGCA-TATTTGCTCGGGACCCGG 169
consensus_14797#2      ATACACACTTAGCAAATC---------ANNGCG-ACCAGCAATATTTGCTCGGGACCCGG 345
consensus_14797#1      ATTTTTACTTTATTATCTGTTGCTTATACAGTGCACTAGCAACAACTGATAAAGAGTAAA 264
                       **    ****    *            *  * * ** ****  *  ** *   **     

consensus_14797#0      -ACGGAAATGCACTGGA----GTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAAC 639
consensus_14797#3      -ACGGAAATGCACTGGA----GTTCACACAAGTGTAGAAGCTGAACCAAGAATTTTCAAC 224
consensus_14797#2      -ACGGAAATGCACTGGA----GTTCACACAAGTGTAGAAGCTGAACCNNGNATTTTCNNN 400
consensus_14797#1      TGCCCTGTTTCTCTGCTTGTTGTCTTCATAGCCTTATTAAAAAACCACTGATCTTTACAG 324
                         *     * * ***      **   ** *    **  *    * *   *   ***    

consensus_14797#0      TAGAAGAGATCATAGCCCTA--CTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGAT-- 695
consensus_14797#3      TAGAAGAGATCATAGCCCTA--CTGTAGTTACCAGTATCCGGTTAAGAAAAAACTGAT-- 280
consensus_14797#2      TAGNNGNGATCATAGCCCTA--CTGTNNNNNCCAGTNNCCGGTTAANNNNNAACTNNN-- 456
consensus_14797#1      TAAAACCTACTAAGACAGCAGGCTATTTTTTTTCTGATGTGGTAAATTGAAAGCCTGCCC 384
                       **      *  *   *   *  ** *              *** **     * *      

consensus_14797#0      TGTACATATCATTATATCGGTTAAAAGGGTACCACATGATGATATATTGATAGTGAAGTT 755
consensus_14797#3      TGTACATATCATTATATCGGTTAAAAGGGTACCCCCTGATGATATATTGATAGTGAAGTT 340
consensus_14797#2      NNNNNNNATCATTATANNNNNTAAAAGNGNNNNNNATGAT-------------------- 496
consensus_14797#1      TGTTTGGAGAAATTTATAGATGTCCTGAAAACCTCATCCTTTGTTTTTGGTAA--ATTTT 442
                              *  * * **          *         *  *                    

consensus_14797#0      GTATGTTGGTATTGG-ACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATT 814
consensus_14797#3      GTATGTTGGTATTGG-ACCCCTTGAAATATTCTCCAGTTTGGTTTGTACTATTATTCATT 399
consensus_14797#2      ------------------------------------------------------------
consensus_14797#1      ACATACCACCATTGCTAGTCATCCAAAAGGTCTGTTGTCTTGAAAGTAATACTCATTANN 502
                                                                                   

consensus_14797#0      ATTCAAACATATTGTTGTTACTGATAGACGAATACTGTAAGCTCCCACTTTCAGATTAGT 874
consensus_14797#3      ATTCAAACATATTGTTGTTACTGATAAAAAAAAAAAAAAAAAAAAAAA------------ 447
consensus_14797#2      ------------------------------------------------------------
consensus_14797#1      CTACTTNNNAGTTCTAGTCAATTAAGATCATAGCATCGTCCATTCACATCCGTATAATGT 562
                                                                                   

consensus_14797#0      ACACATATACTCCTCTCGTACTGTTAATATCCACTGTATCCTTCAGATATTAATTACCGA 934
consensus_14797#3      ------------------------------------------------------------
consensus_14797#2      ------------------------------------------------------------
consensus_14797#1      TNNNNNNCATTTTNCNATTTT--------------------------------------- 583
                                                                                   

consensus_14797#0      ATCACACCATGCAGTTGCCACTTGC 959
consensus_14797#3      -------------------------
consensus_14797#2      -------------------------
consensus_14797#1      -------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)