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Oryza sativa
cluster # 14840 cluster # 14840       Sequences # 18       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14840#0 length = 663 sequences # 14  
consensus_14840#1 length = 505 sequences # 1  
consensus_14840#2 length = 501 sequences # 1  
consensus_14840#3 length = 486 sequences # 1  
consensus_14840#4 length = 466 sequences # 1  

consensusID : consensus_14840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 663
fasta sequence
                              [TTTTTTCNTTTTTTTTTNTTNTTTCCCCTTTTTTTTTTTTTACGAAAGATGCTCA-TTAATTTCCCAGATTCT-GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGAC]

[-] EMBL AU070930             [TTTTTTCNTTTTTTTTTNTTNTTTCCCCTTTTTTTTTTTTTACGAAAGATGCTCA TTAATTTCCCAGATTCT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCAT                                                                                                                                                                                                                                                                             ]
[-] EMBL CB685755             [                         tggTTTTCTGTAGTGTACGAAAGATGCTCA TTAATTTCCCAGATTCT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTATTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTGTGCTTCGCCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGGGGCC                                                                                                                                                                                     ]
[-] EMBL BM419747             [                               TTTTTTTTTTACGAAAGATGCTCA TTAATTTCCCAGATACT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACNGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAcgg                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF311133             [                                 TTTTTTGTACGAAAGATGCTCA TTAATTTCCCAGATTCT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGA  ACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATT                                                                                                                                                                                 ]
[-] EMBL AU166299             [                                  TTTTTGTACGAAAGATGCTCA TTAATTTCCCAGATTCT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCT                                                                                                                                                                                                              ]
[+] EMBL CF280446             [                                     TTTTACGAAAGATGCTCA TTAATTTCCCAGATTCT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTTCTTATATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCA TTTTTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGAT                 ]
[-] EMBL AU070745             [                                            AAAGATGCTCATTTAATTTCCCAGATTCTGGGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCAT                                                                                                                                                                                                                                                                             ]
[+] EMBL CB633657             [                                             AAGATGCTCA TTAATTTCCCAGATACC GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGA ]
[+] EMBL CB649237             [                                              AGATGCTCA TTAATTTCCCAGCCTCT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGA ]
[-] EMBL AK060032             [                                                 TGCTCA TTAATTTCCCAGATTCT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGAC]
[+] EMBL CB626850             [                                                   CTCA TTAATTTCCCAGATACT GGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGGATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTGGAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGA ]
[+] EMBL BI118675             [                                                                                                                                                                                                                                                                                         ACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGA ]
[-] EMBL AA754581             [                                                                                                                                                                                                                                                                                                                AAAAGATCGGT GTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTAGCTTCGGCCNTGGTGCTCTCCACCCATTNGGCATNGATCCTCACTCTCTNGATGNTCNGCTTCACCGTCCTCGCGATGTNGGCTTTCGTCNTGCTCTGGAAGAANTCNTCNGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGNTGCACCGACTCNTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGAC]
[-] EMBL AA750407             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCT  CCTCAGGTGAC]


>consensus_14840#0 TTTTTTCNTTTTTTTTTNTTNTTTCCCCTTTTTTTTTTTTTACGAAAGATGCTCATTAAT TTCCCAGATTCTGGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGG ATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTG GAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAA GTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCA GGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTA GCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGC TTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCG CCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTT CCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCA TGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGT GAC



consensusID : consensus_14840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence
                              [TTTTTTTTTTGGCATCTATCAAACTGACATAACCGGGAGAAACGGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTGGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGGGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTAGCCTCGGCCCGTGGGGCTCTCCACCCATTGGGCATTGATCCTCACTCTCTCGATGCTCGGGTTCACCGTCCTCGCGATGTTGGCCTTCGTCCGGGCTCTGTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGGTGCGCAGCGGGTGAGACGGGGGGGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGGGTCTGAAAGGTAGTCCCACTTTTCCTTCAACCAGGTCCAGGCACCTCAGTGTCCCGTGTGACCGACTCCTCTAAGCAAAAATATAGAGTCCTG]

[-] EMBL BI812006             [TTTTTTTTTTGGCATCTATCAAACTGACATAACCGGGAGAAACGGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTGGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGGGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTAGCCTCGGCCCGTGGGGCTCTCCACCCATTGGGCATTGATCCTCACTCTCTCGATGCTCGGGTTCACCGTCCTCGCGATGTTGGCCTTCGTCCGGGCTCTGTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGGTGCGCAGCGGGTGAGACGGGGGGGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGGGTCTGAAAGGTAGTCCCACTTTTCCTTCAACCAGGTCCAGGCACCTCAGTGTCCCGTGTGACCGACTCCTCTAAGCAAAAATATAGAGTCCTG]


>consensus_14840#1 TTTTTTTTTTGGCATCTATCAAACTGACATAACCGGGAGAAACGGGTCCATAGATGCAAG TATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTGGTTGCTG GAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGGGG TCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTAGCCTCGGCCCGTGGGGCTCTCCAC CCATTGGGCATTGATCCTCACTCTCTCGATGCTCGGGTTCACCGTCCTCGCGATGTTGGC CTTCGTCCGGGCTCTGTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGGTGCGCAG CGGGTGAGACGGGGGGGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGGGTCTGAAA GGTAGTCCCACTTTTCCTTCAACCAGGTCCAGGCACCTCAGTGTCCCGTGTGACCGACTC CTCTAAGCAAAAATATAGAGTCCTG



consensusID : consensus_14840#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence
                              [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCACTAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACAGGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAAAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAACGGTGAGACGGTGGTGGAAACAAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGA]

[+] EMBL CB679711             [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCACTAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACAGGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAAAAATTTCCTTGAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAACGGTGAGACGGTGGTGGAAACAAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCACCTCAGGTGA]


>consensus_14840#2 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCACTAGGGGCATGCAAC AGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTAC AGGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAAAAATTTCCTT GAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCT CACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAA GAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAACGGTGAGACGGTGGTGGAAAC AAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAA CCATGTCCATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTC CTGATTCCTCACCTCAGGTGA



consensusID : consensus_14840#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence
                              [TTTTTTTTTTTTTTAACCTGGAGAAACGGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGTGACGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCC]

[-] EMBL BI812087             [TTTTTTTTTTTTTTAACCTGGAGAAACGGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGAAGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAACCATGTCCATGCCACCTCATGTCCCGTGACGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCC]


>consensus_14840#3 TTTTTTTTTTTTTTAACCTGGAGAAACGGGTCCATAGATGCAAGTATCAGGGGCATGCAA CAGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTA CACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCT TAAGGACATTGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTTGGCATTGATCC TCACTCTCTCGATGCTCTGCTTCACCGTCCTCGCGATGTTGGCCTTCGTCCTGCTCTTGA AGAACTCCTCCGCGTCGTCGCCCATTTCATCGGTGCGCAGCGGTGAGACGGTGGTGGAAA CGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCA ACCATGTCCATGCCACCTCATGTCCCGTGACGACTCCTCTAAGCAAAAATATAGAGTCCT GATTCC



consensusID : consensus_14840#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence
                              [TTTTTTTTTTGGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACATGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGGTCCTCGGCGATGTTGGCCTTCGGTCCGTGGCTCTTGAAGAACTCCTCCGGCGATCGTCGCCCATTTCATCGGGTGCGCAGCGGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAAGCCATGTCCATGCCACCTCATGTCCCGGTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCAGNCTACAGGTGACAGCA]

[-] EMBL BQ908130             [TTTTTTTTTTGGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACATGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTGGCATTGATCCTCACTCTCTCGATGCTCTGCTTCACCGGTCCTCGGCGATGTTGGCCTTCGGTCCGTGGCTCTTGAAGAACTCCTCCGGCGATCGTCGCCCATTTCATCGGGTGCGCAGCGGGTGAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAAGCCATGTCCATGCCACCTCATGTCCCGGTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTCCTCAGNCTACAGGTGACAGCA]


>consensus_14840#4 TTTTTTTTTTGGGTCGTCTAACCCACCAAGTTCTTATTACTAACTTGTTGCTGGAGAGTA CGCATCTTACACGCTAAGACAACGGCGCAGGAAAAGATCGGTCGTCTCAGTGGTCGTGAG AAATTTCCTTAAGGACATGCCCAGGTTAGCCTCGGCCCTGGTGCTCTCCACCCATTGGCA TTGATCCTCACTCTCTCGATGCTCTGCTTCACCGGTCCTCGGCGATGTTGGCCTTCGGTC CGTGGCTCTTGAAGAACTCCTCCGGCGATCGTCGCCCATTTCATCGGGTGCGCAGCGGGT GAGACGGTGGTGGAAACGAAATAGGTGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAG TCCCACTTTTCCTTCAAGCCATGTCCATGCCACCTCATGTCCCGGTGCACCGACTCCTCT AAGCAAAAATATAGAGTCCTGATTCCTCAGNCTACAGGTGACAGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14840#1      ------------------------------------------------------------
consensus_14840#3      ------------------------------------------------------------
consensus_14840#0      TTTTTTCNTTTTTTTTTNTTNTTTCCCCTTTTTTTTTTTTTACGAAAGATGCTCATTAAT 60
consensus_14840#2      ------------------------------------------------------------
consensus_14840#4      ------------------------------------------------------------
                                                                                   

consensus_14840#1      ------------------------------------------------------------
consensus_14840#3      ------------------------------------------------------------
consensus_14840#0      TTCCCAGATTCTGGCAATGTTGAACTGCCAGGGCAACATTTGCATGCAATTCATGTCCGG 120
consensus_14840#2      ------------------------------------------------------------
consensus_14840#4      ------------------------------------------------------------
                                                                                   

consensus_14840#1      ------------------------TTTTTTTTTTGGCATCTATCAAACTGACATAACCGG 36
consensus_14840#3      ----------------------------------------TTTTTTTTTTTTTTAACCTG 20
consensus_14840#0      ATGTCCCTATCAAATACTCCATGCAAATTGCAATTGCATCTATCAAACTGACATAACCTG 180
consensus_14840#2      -----------------------------------------TCTCTCTCTCTCTCTCTCT 19
consensus_14840#4      ------------------------------------------------------------
                                                                                   

consensus_14840#1      GAGAAACGGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAA 96
consensus_14840#3      GAGAAACGGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAA 80
consensus_14840#0      GAGAAACTGGTCCATAGATGCAAGTATCAGGGGCATGCAACAGGTCGTCTAACCCACCAA 240
consensus_14840#2      CTCTCTCTCTCTCTCTCACTCTCTCACTAGGGGCATGCAACAGGTCGTCTAACCCACCAA 79
consensus_14840#4      -------------------------------TTTTTTTTTTGGGTCGTCTAACCCACCAA 29
                                                          *      ******************

consensus_14840#1      GTTCTTATTACTAACTGGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCA 156
consensus_14840#3      GTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCA 140
consensus_14840#0      GTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCA 300
consensus_14840#2      GTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACAGGCTAAGACAACGGCGCA 139
consensus_14840#4      GTTCTTATTACTAACTTGTTGCTGGAGAGTACGCATCTTACACGCTAAGACAACGGCGCA 89
                       **************** ************************* *****************

consensus_14840#1      GGAAAAGATCGGTCGTCTCAGGGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTA 216
consensus_14840#3      GGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACATTGCCCAGGTTA 200
consensus_14840#0      GGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTGAGGACATTGCCCAGGTTA 360
consensus_14840#2      GGAAAAGATCGGTCGTCTCAGTGGTCGTGAAAAATTTCCTTGAGGACATTGCCCAGGTTA 199
consensus_14840#4      GGAAAAGATCGGTCGTCTCAGTGGTCGTGAGAAATTTCCTTAAGGACAT-GCCCAGGTTA 148
                       ********************* ******** ********** ******* **********

consensus_14840#1      GCCTCGGCCCGTGGGGCTCTCCACCCATTGGGCATTGATCCTCACTCTCTCGATGCTCGG 276
consensus_14840#3      GCCTCGGCCC-TGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTG 259
consensus_14840#0      GCCTCGGCCC-TGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTG 419
consensus_14840#2      GCCTCGGCCC-TGGTGCTCTCCACCCATTTGGCATTGATCCTCACTCTCTCGATGCTCTG 258
consensus_14840#4      GCCTCGGCCC-TGGTGCTCTCCACCCATT-GGCATTGATCCTCACTCTCTCGATGCTCTG 206
                       ********** *** ************** **************************** *

consensus_14840#1      GTTCACCG-TCCTCG-CGATGTTGGCCTTCGTCCGGG--CTCTGTGAAGAACTCCTCCGC 332
consensus_14840#3      CTTCACCG-TCCTCG-CGATGTTGGCCTTCGTCCTG---CTCT-TGAAGAACTCCTCCGC 313
consensus_14840#0      CTTCACCG-TCCTCG-CGATGTTGGCCTTCGTCCTG---CTCT-TGAAGAACTCCTCCGC 473
consensus_14840#2      CTTCACCG-TCCTCG-CGATGTTGGCCTTCGTCCTG---CTCT-TGAAGAACTCCTCCGC 312
consensus_14840#4      CTTCACCGGTCCTCGGCGATGTTGGCCTTCGGTCCGTGGCTCT-TGAAGAACTCCTCCGG 265
                        ******* ****** ***************  * *   **** *************** 

consensus_14840#1      --GTCGTCGCCCATTTCATCGGGTGCGCAGCGGGTGAGACGGGGGGGGAAACGAAATAGG 390
consensus_14840#3      --GTCGTCGCCCATTTCATCGG-TGCGCAGCGG-TGAGACGGTGGTGGAAACGAAATAGG 369
consensus_14840#0      --GTCGTCGCCCATTTCATCGG-TGCGCAGCGG-TGAGACGGTGGTGGAAACGAAATAGG 529
consensus_14840#2      --GTCGTCGCCCATTTCATCGG-TGCGCAACGG-TGAGACGGTGGTGGAAACAAAATAGG 368
consensus_14840#4      CGATCGTCGCCCATTTCATCGGGTGCGCAGCGGGTGAGACGGTGGTGGAAACGAAATAGG 325
                          ******************* ****** *** ******** ** ****** *******

consensus_14840#1      TGAGAAGAGTTCCAGAGAAGGGGTCTGAAAGGTAGTCCCACTTTTCCTTCAA-CCAGGTC 449
consensus_14840#3      TGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAA-CCATGTC 428
consensus_14840#0      TGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAA-CCATGTC 588
consensus_14840#2      TGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAA-CCATGTC 427
consensus_14840#4      TGAGAAGAGTTCCAGAGAAGGTGTCTGAAATGTAGTCCCACTTTTCCTTCAAGCCATGTC 385
                       ********************* ******** ********************* *** ***

consensus_14840#1      CAGGCACCTCAGTGTCCCGTGTGACCGACTCCTCTAAGCAAAAATATAGAGTCCTG---- 505
consensus_14840#3      CATGCCACCTCATGTCCCGTGA---CGACTCCTCTAAGCAAAAATATAGAGTCCTGATTC 485
consensus_14840#0      CATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTC 648
consensus_14840#2      CATGCCACCTCATGTCCCGCTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTC 487
consensus_14840#4      CATGCCACCTCATGTCCCGGTGCACCGACTCCTCTAAGCAAAAATATAGAGTCCTGATTC 445
                       ** **  *    *******      *******************************    

consensus_14840#1      ---------------------
consensus_14840#3      C-------------------- 486
consensus_14840#0      CTCACCTCAGGTGAC------ 663
consensus_14840#2      CTCACCT--CAGGTGA----- 501
consensus_14840#4      CTCAGNCTACAGGTGACAGCA 466
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)