These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1295 fasta sequence [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA-GAGGGCTTTG-GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC--TTCAGTGCAGGCGGACCTAGCCA-AT-CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA-CCCTACAAAGTTACGCAACA-ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA-CTGAGGCACTA-TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA-GTCGATTCTTCCA-AGGATGAACATGTCAGGATAAGTTTCGCA-GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA-TTTTGTGGCC-A-ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT-GTATGGGTTT--CA-ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA-GAGATCTATGAT-TT-TTACA-CAGT-TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA-CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAAAAAATTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAAAATATGATAAAAAAAAAA] [+] EMBL AK060573 [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAG ] [+] EMBL AK099485 [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGG ] [+] EMBL CB670054 [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAATCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAATGAGGGCTTTGAGAGGAGATACTCTATGCACTTGTTGTCCACAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGATCTTTCCCACTCTATCAGTTCTTCTGGAAGAGGTGATCAGGGGGCAGAATCTGTGGAAGGTAAACTTGAGAACATGCATTCACGGGATGCATATGAAATGATCAAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCGAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGACAGGTGTATGCTGCTTCTG ] [+] EMBL CB672293 [ cCCTACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGTGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGG ] [+] EMBL CA999480 [ ATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGC ] [-] EMBL CB670055 [ GAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTAAGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGT ] [+] EMBL BQ907166 [ tTTCCCTTAACTTTTCA TCCAGCCGACCCTAACCA ATCCTGTTAACCCATCCCGTCTTAGATC TATGTCAT TCATTTGATTCAGAGACCCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCACAGGATGAACATGTCAGGATAAGTTTCGCACGGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCACTTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGTCGTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAAAAAA ] [-] EMBL CB659491 [ TCAGTGCAGGCGGTCCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTtg ] [+] EMBL BI811662 [ aGCGGACCTA CCACAT CTGTTAA CCAT CC TCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACACATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACACCTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCACAGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCACTTTTGTGGCC ACACTAGTTGATCCTACCAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CACATGAAGACTCTTT CCAAACGAATTTCTCCTGGCTCTATCCAGATC CA GAGATCTATGAT TT TTACA C GT TTTC GGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa ] [-] EMBL CK085125 [ T CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAA ] [+] EMBL BI811708 [ CCGTCTTAGATCGTATGTCATGTCA TTGATTCAGAGA CCCTAC AAGTTACGC ACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTATTTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACACGTCGATTCTTCCA AGGATGAACATGTCAGGATAATTTTCGCA GGTTGAGAA GCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCCAA ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa ] [+] EMBL BI813813 [ TACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACC CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa ] [+] EMBL BM420985 [ TA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTT GGCTGCTT GGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAAaaaa ] [-] EMBL CB672292 [ TCGATTCTTCCA AGGATGTACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTGCAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATA ] [+] EMBL BI812735 [ GAAGT GTATGGGTTTCACA ATGAAGACTCTTT CCAAACGAATTTCTCCTGGCTCTATCCAGATCCCACGAGATCTATGATGTTGTTACACCAGTGTTTCGGGCATATAGCTTCCATGTAAAATGGATATTTTTTTAGCCTAATGTGCACCTGTTAGTTCCTGGTAACACCTTGGGCTGCTTGGGCC TGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCCAACTTTACCACAGATTTTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAAAATATGATAAAAAAAAAA] consensusID : consensus_14849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [GCTCGTGCCGAATTCGGCACGAGAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAAACCCTACAAAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGNACTATTTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGGATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGATCTTANAGGCTGTTACTTTTGGATCCNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCNTCCCNNATAGTGGANATTAATGTGTNTATTTGGTCCNAAATGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT] [+] EMBL AA752035 [GCTCGTGCCGAATTCGGCACGAGAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAAACCCTACAAAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGNACTATTTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGGATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGATCTTANAGGCTGTTACTTTTGGATCCNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCNTCCCNNATAGTGGANATTAATGTGTNTATTTGGTCCNAAATGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT] consensusID : consensus_14849#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATACTCTATGCACTGTTGTNCGAAGTTTGTNGAAGCTGTGTTCTNTGGTNNCAGCTCTTCCACTCTATCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATGCTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGCGTGATTNCACGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCACTGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGGTACTCNTANG] [+] EMBL CA752984 [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATACTCTATGCACTGTTGTNCGAAGTTTGTNGAAGCTGTGTTCTNTGGTNNCAGCTCTTCCACTCTATCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATGCTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGCGTGATTNCACGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCACTGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGGTACTCNTANG] consensusID : consensus_14849#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [CCAACTTAGTTGATCCTACCAAAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGATNATGTGTGGTGCCCGAAGTGGTAATGGGTGTGTGCCAATGGAAGACTGCTTGTGGCCAAACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGATTTNTTACCCCGTTTTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCTGTTAGTTCCTGGGTAACCCTTGGGCTGCTTGGGCCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAAAAA] [+] EMBL BQ908245 [CCAACTTAGTTGATCCTACCAAAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGATNATGTGTGGTGCCCGAAGTGGTAATGGGTGTGTGCCAATGGAAGACTGCTTGTGGCCAAACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGATTTNTTACCCCGTTTTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCTGTTAGTTCCTGGGTAACCCTTGGGCTGCTTGGGCCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14849#0 AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGC 60 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGG 120 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 AGCGCAAGAGGGCTTTGGAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAG 180 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATC 240 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 AGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAA 300 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 TGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGG 360 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCC 420 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 TTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGAT 480 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGA 540 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAACTTCAGTGCAGGCGGAC 600 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA 660 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CCCTACAAAGTTACGCAACAATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA 720 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 -----------------------------GCTCGTGCCGAATTCGGCACGAGAGAAGAGG 31 consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CTGAGGCACTATTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACAGTCGATTCTT 780 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 AAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTT 91 consensus_14849#2 ------------------------------------------------------------ consensus_14849#0 CCAAGGATGAACATGTCAGGATAAGTTTCGCAGGGTTGAGAAGGCTGATCTTAGAGGCTG 840 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 CACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAAT 151 consensus_14849#2 -------------------------AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCC 35 consensus_14849#0 TTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTT-GTGGAC-ACCAGGTACC---A 895 consensus_14849#3 ------------------------------CCAACTTA-GTTGAT-CC----TACC---A 21 consensus_14849#1 CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCA-TTTGAT-TCAGAAACCCTACA 209 consensus_14849#2 GCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGG 95 ** * consensus_14849#0 TTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCATCCCAGATAG---------TGGAGA 946 consensus_14849#3 AAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGA---------TNATGT 72 consensus_14849#1 AAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGN 269 consensus_14849#2 CGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATAC---TCTATGC 152 * * * consensus_14849#0 TTAGT-GTGTATATTTGGTCCGAAGTGTATG--GGTTTCAATGAAGACTCTTTGCAAA-- 1001 consensus_14849#3 GTGGT-GCCCGAAGT-GGTAATGGGTGTGTG--CCAATGGAAGACTGCTTGTGGCCAA-- 126 consensus_14849#1 ACTAT-TTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGG 328 consensus_14849#2 ACTGTTGTNCGAAGTTTGTNGAAGCTGTGTT--CTNTGGTNNCAGCTCTTCCACTCTA-- 208 * * * * * * consensus_14849#0 ACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGA------TTTTT-ACACAG 1054 consensus_14849#3 ACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGA------TTTNTTACCCCG 180 consensus_14849#1 ATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGA------TCTTANAGGCTG 382 consensus_14849#2 -TCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATG 267 * * * * * * *** * consensus_14849#0 TT-TTCGGGCATATAGCTTC-AATGTAAAATGGATATTTTTTTAGCCT-AATGTGCAGCT 1111 consensus_14849#3 TT-TTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCT 239 consensus_14849#1 TTACTTTTGGATC---CNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATT 439 consensus_14849#2 CTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGC- 326 * * * * * ** * * * consensus_14849#0 GTTAGTTC--CTGG-TAACACTTGGGCTGCTT-GGGCC-TTGGGTGATGTATAATGT--- 1163 consensus_14849#3 GTTAGTTC--CTGGGTAACCCTTGGGCTGCTT-GGGCCCTTGGGTGATGTATAATGT--- 293 consensus_14849#1 TTGTGGCCAACTAGTTGATCCTACAAAGTTTC-NTCCCNNATAGTGGANATTAATGTG-- 496 consensus_14849#2 GTGATTNCA-CGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCAC 385 * * * * * ** * *** consensus_14849#0 TTTAT--GACTTGATG---TCTG-GAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCA 1217 consensus_14849#3 TTTAT--GACTTGATG---TCTG-GAAATTGAATGAGGAAAAA----------------- 330 consensus_14849#1 TNTATTTGGTCCNAAA---TGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT-- 551 consensus_14849#2 TGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGG 445 * * * * * * consensus_14849#0 AACTTTAAAAAAAAAATTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAA 1277 consensus_14849#3 ------------------------------------------------------------ consensus_14849#1 ------------------------------------------------------------ consensus_14849#2 TACTCNTANG-------------------------------------------------- 455 consensus_14849#0 AATATGATAAAAAAAAAA 1295 consensus_14849#3 ------------------ consensus_14849#1 ------------------ consensus_14849#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||