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Oryza sativa
cluster # 14849 cluster # 14849       Sequences # 18       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14849#0 length = 1295 sequences # 15  
consensus_14849#1 length = 551 sequences # 1  
consensus_14849#2 length = 455 sequences # 1  
consensus_14849#3 length = 330 sequences # 1  

consensusID : consensus_14849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1295
fasta sequence
                              [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA-GAGGGCTTTG-GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC--TTCAGTGCAGGCGGACCTAGCCA-AT-CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA-CCCTACAAAGTTACGCAACA-ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA-CTGAGGCACTA-TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA-GTCGATTCTTCCA-AGGATGAACATGTCAGGATAAGTTTCGCA-GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA-TTTTGTGGCC-A-ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT-GTATGGGTTT--CA-ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA-GAGATCTATGAT-TT-TTACA-CAGT-TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA-CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAAAAAATTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAAAATATGATAAAAAAAAAA]

[+] EMBL AK060573             [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC  TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAG                                                                                  ]
[+] EMBL AK099485             [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC  TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGG                                                                                                    ]
[+] EMBL CB670054             [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAATCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAATGAGGGCTTTGAGAGGAGATACTCTATGCACTTGTTGTCCACAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGATCTTTCCCACTCTATCAGTTCTTCTGGAAGAGGTGATCAGGGGGCAGAATCTGTGGAAGGTAAACTTGAGAACATGCATTCACGGGATGCATATGAAATGATCAAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCGAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGACAGGTGTATGCTGCTTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB672293             [                    cCCTACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGTGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGGAGCGCAA GAGGGCTTTG GAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAGCTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATCAGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAATGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGGCCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC  TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA999480             [                                                                                                                                                                                                                                                                                                                                                                                                                          ATGGTTACTTCCTTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC  TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB670055             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAAGACCCTCCCTTGGGGATCAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAAC  TTCAGTGCAGGCGGACCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTAAGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGT                                                                                 ]
[+] EMBL BQ907166             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               tTTCCCTTAACTTTTCA TCCAGCCGACCCTAACCA ATCCTGTTAACCCATCCCGTCTTAGATC TATGTCAT TCATTTGATTCAGAGACCCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCACAGGATGAACATGTCAGGATAAGTTTCGCACGGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCACTTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGTCGTATGGGTTT  CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAAAAAA                                                              ]
[-] EMBL CB659491             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCAGTGCAGGCGGTCCTAGCCA AT CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTtg                                                                                                                 ]
[+] EMBL BI811662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     aGCGGACCTA CCACAT CTGTTAA CCAT CC TCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACACATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACACCTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCACAGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCACTTTTGTGGCC ACACTAGTTGATCCTACCAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CACATGAAGACTCTTT CCAAACGAATTTCTCCTGGCTCTATCCAGATC CA GAGATCTATGAT TT TTACA C GT TTTC GGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa                                                                                                                                                                   ]
[-] EMBL CK085125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     T CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTTGGGCTGCTTGGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCAAACTTTAAAAAA                                                                  ]
[+] EMBL BI811708             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCGTCTTAGATCGTATGTCATGTCA TTGATTCAGAGA CCCTAC AAGTTACGC ACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTATTTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACACGTCGATTCTTCCA AGGATGAACATGTCAGGATAATTTTCGCA  GGTTGAGAA GCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCCAA ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa                                                                                                                                                                   ]
[+] EMBL BI813813             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TACAAAGTTACGCAACA ATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACC CTGAGGCACTA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAAaa aaaa                                                                                                                                                                   ]
[+] EMBL BM420985             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TA TTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACA GTCGATTCTTCCA AGGATGAACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTACAAAGTTTCATCCCAGGTAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGC AAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACA CTT GGCTGCTT GGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAAaaaa                                                                                                          ]
[-] EMBL CB672292             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCGATTCTTCCA AGGATGTACATGTCAGGATAAGTTTCGCA GGGTTGAGAAGGCTGATCTTAGAGGCTGTTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCA TTTTGTGGCC A ACTAGTTGATCCTGCAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATTTGGTCCGAAGT GTATGGGTTT  CA ATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCTATGCAGATCGCA GAGATCTATGAT TT TTACA CAGT TTTCGGGCATATAGCTTCAATGTAAAATGGATA                                                                                                                                                                                                                ]
[+] EMBL BI812735             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAGT GTATGGGTTTCACA ATGAAGACTCTTT CCAAACGAATTTCTCCTGGCTCTATCCAGATCCCACGAGATCTATGATGTTGTTACACCAGTGTTTCGGGCATATAGCTTCCATGTAAAATGGATATTTTTTTAGCCTAATGTGCACCTGTTAGTTCCTGGTAACACCTTGGGCTGCTTGGGCC TGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCCAACTTTACCACAGATTTTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAAAATATGATAAAAAAAAAA]


>consensus_14849#0 AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGC CCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGG AGCGCAAGAGGGCTTTGGAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAG CTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATC AGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAA TGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGG CCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCC TTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGAT CAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGA CTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAACTTCAGTGCAGGCGGAC CTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA CCCTACAAAGTTACGCAACAATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA CTGAGGCACTATTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACAGTCGATTCTT CCAAGGATGAACATGTCAGGATAAGTTTCGCAGGGTTGAGAAGGCTGATCTTAGAGGCTG TTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTTGTGGACACCAGGTACCATTTTG TGGCCAACTAGTTGATCCTACAAAGTTTCATCCCAGATAGTGGAGATTAGTGTGTATATT TGGTCCGAAGTGTATGGGTTTCAATGAAGACTCTTTGCAAAACGAATTTCTCCTGGCTCT ATGCAGATCGCAGAGATCTATGATTTTTACACAGTTTTCGGGCATATAGCTTCAATGTAA AATGGATATTTTTTTAGCCTAATGTGCAGCTGTTAGTTCCTGGTAACACTTGGGCTGCTT GGGCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAATCC TAGCTAGCTCTAGTTCAAACTTTAAAAAAAAAATTTTGGCCCTTCATACTGCTTTCTTTT GTTCAATAACCCGTAAAAATATGATAAAAAAAAAA



consensusID : consensus_14849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence
                              [GCTCGTGCCGAATTCGGCACGAGAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAAACCCTACAAAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGNACTATTTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGGATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGATCTTANAGGCTGTTACTTTTGGATCCNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCNTCCCNNATAGTGGANATTAATGTGTNTATTTGGTCCNAAATGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT]

[+] EMBL AA752035             [GCTCGTGCCGAATTCGGCACGAGAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAAACCCTACAAAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGNACTATTTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGGATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGATCTTANAGGCTGTTACTTTTGGATCCNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCNTCCCNNATAGTGGANATTAATGTGTNTATTTGGTCCNAAATGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT]


>consensus_14849#1 GCTCGTGCCGAATTCGGCACGAGAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACG GACTCAAGGCCCTCACCCCAGACTTCTACTTCACATCCAGANATGGNATCATGGACTTCC CCTAACTTCAGTGCAGGCGGACCTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTAT GTCATGTCATTTGATTCAGAAACCCTACAAAGTTACGCAACAATCAGGTCCANGGAGGNA TTTGGCATCNTCNAAAAACACACTGAGGNACTATTTGGTNAACCANAAATTGTTATCNCA CCTGAAGGGACAGTCNATTCTTCCAAGGATGAACATGTNAGGATAANTTTCGCAGGGTTG ANAANGNTGATCTTANAGGCTGTTACTTTTGGATCCNTCCNTTGGGATGTTGANANCTTT GTGGACACCANGTNCCATTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCNTCCCNNAT AGTGGANATTAATGTGTNTATTTGGTCCNAAATGTNTGGGTTTCAATGAAAATCTTTGCA AACNAATTTCT



consensusID : consensus_14849#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence
                              [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATACTCTATGCACTGTTGTNCGAAGTTTGTNGAAGCTGTGTTCTNTGGTNNCAGCTCTTCCACTCTATCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATGCTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGCGTGATTNCACGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCACTGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGGTACTCNTANG]

[+] EMBL CA752984             [AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATACTCTATGCACTGTTGTNCGAAGTTTGTNGAAGCTGTGTTCTNTGGTNNCAGCTCTTCCACTCTATCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATGCTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGCGTGATTNCACGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCACTGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGGTACTCNTANG]


>consensus_14849#2 AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGC CCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGGTCAAGGAANAG GAGCGCAGAGGCTTGGANGAGATACTCTATGCACTGTTGTNCGAAGTTTGTNGAAGCTGT GTTCTNTGGTNNCAGCTCTTCCACTCTATCAGNNTCTCTGGAGAAGTGATCAGTGGGCAG AATCNGTGAAGGGAANNCTGAGAGATGCTTNACANGAGGCNATTGANTGATCGAAACNNN ACTGCTTCATCAGAGGCANCGGCAGCGTGATTNCACGAGACANNGNAGCGGCGAGTCAGG GGTCAAGCGTCTAGCCTGATGCCACTGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTC AGGTTATTGCTNGCTCGTAATTTGGTACTCNTANG



consensusID : consensus_14849#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence
                              [CCAACTTAGTTGATCCTACCAAAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGATNATGTGTGGTGCCCGAAGTGGTAATGGGTGTGTGCCAATGGAAGACTGCTTGTGGCCAAACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGATTTNTTACCCCGTTTTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCTGTTAGTTCCTGGGTAACCCTTGGGCTGCTTGGGCCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAAAAA]

[+] EMBL BQ908245             [CCAACTTAGTTGATCCTACCAAAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGATNATGTGTGGTGCCCGAAGTGGTAATGGGTGTGTGCCAATGGAAGACTGCTTGTGGCCAAACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGATTTNTTACCCCGTTTTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCTGTTAGTTCCTGGGTAACCCTTGGGCTGCTTGGGCCCTTGGGTGATGTATAATGTTTTATGACTTGATGTCTGGAAATTGAATGAGGAAAAA]


>consensus_14849#3 CCAACTTAGTTGATCCTACCAAAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGG TGGTGATNATGTGTGGTGCCCGAAGTGGTAATGGGTGTGTGCCAATGGAAGACTGCTTGT GGCCAAACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGATTTNTTACCCCG TTTTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCTG TTAGTTCCTGGGTAACCCTTGGGCTGCTTGGGCCCTTGGGTGATGTATAATGTTTTATGA CTTGATGTCTGGAAATTGAATGAGGAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14849#0      AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCCGCCAAGGACAACGGCGGCGACAAGC 60
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CCGCGCCGTCGGACGGCGACATCGTGCTGTACAGGCGGATTGCTGAGGTCAAGGAAAAGG 120
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      AGCGCAAGAGGGCTTTGGAGGAGATACTCTATGCACTTGTTGTCCAGAAGTTTGTTGAAG 180
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CTGGTGTTTCTTTGGTTCCAGCTCTTTCCCACTCTATCAGTTCTTCTGGAAGAGTTGATC 240
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      AGTGGGCAGAATCTGTGGAAGGGAAACTTGAGAAGATGCATTCACAGGAGGCATATGAAA 300
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      TGATCGAGAACCACCTCGCTCTCATCCTGGGGCAGCGGCAAGCTGATGCCACTGTTGCGG 360
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CCATAAGTAAACTCCGAGTTGGTCAGGTGTATGCTGCTTCTGTGATGTATGGTTACTTCC 420
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      TTAAGAGAGTCGATCAGAGATTTCAGCTCGAGAAGTCAATGAAGACCCTCCCTTGGGGAT 480
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CAGAAGAGGAAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGA 540
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CTTCTACTTCACATCCAGAGATGGCATCATGGACTTCCCCTAACTTCAGTGCAGGCGGAC 600
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CTAGCCAATCTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCATTTGATTCAGAGA 660
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CCCTACAAAGTTACGCAACAATCAGGTCCAAGGAGGCATTTGGCATCATCGAGAAGCACA 720
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      -----------------------------GCTCGTGCCGAATTCGGCACGAGAGAAGAGG 31
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CTGAGGCACTATTTGGTAAACCAGAGATTGTAATCACACCTGAAGGCACAGTCGATTCTT 780
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      AAGACAAGCTCAACCAAGTTATGACAACGGACTCAAGGCCCTCACCCCAGACTTCTACTT 91
consensus_14849#2      ------------------------------------------------------------
                                                                                   

consensus_14849#0      CCAAGGATGAACATGTCAGGATAAGTTTCGCAGGGTTGAGAAGGCTGATCTTAGAGGCTG 840
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      CACATCCAGANATGGNATCATGGACTTCCCCTAACTTCAGTGCAGGCGGACCTAGCCAAT 151
consensus_14849#2      -------------------------AGCAGCTCGAGCAGCTCCAGACCGACCGCGACGCC 35
                                                                                   

consensus_14849#0      TTACTTTTGGATCCTTCCTTTGGGATGTTGAGAGCTTT-GTGGAC-ACCAGGTACC---A 895
consensus_14849#3      ------------------------------CCAACTTA-GTTGAT-CC----TACC---A 21
consensus_14849#1      CTGTTAAGCCATGCCGTCTTAGATCGTATGTCATGTCA-TTTGAT-TCAGAAACCCTACA 209
consensus_14849#2      GCCAAGGACAACGGCGGCGACAAGCCCGCGCCGTCGGACGGCGACATCGTGCTGTACAGG 95
                                                                 **   *            

consensus_14849#0      TTTTGTGGCCAACTAGTTGATCCTACAAAGTTTCATCCCAGATAG---------TGGAGA 946
consensus_14849#3      AAGTGTGTCAATGCCCCAGGTTAGTGGGAGATTGAGTGGTGGTGA---------TNATGT 72
consensus_14849#1      AAGTTACGCAACAATCAGGTCCANGGAGGNATTTGGCATCNTCNAAAAACACACTGAGGN 269
consensus_14849#2      CGGATTGCTGAGGGTCAAGGAANAGGAGCGCAGAGGCTTGGANGAGATAC---TCTATGC 152
                                 *       *                                       * 

consensus_14849#0      TTAGT-GTGTATATTTGGTCCGAAGTGTATG--GGTTTCAATGAAGACTCTTTGCAAA-- 1001
consensus_14849#3      GTGGT-GCCCGAAGT-GGTAATGGGTGTGTG--CCAATGGAAGACTGCTTGTGGCCAA-- 126
consensus_14849#1      ACTAT-TTGGTNAACCANAAATTGTTATCNCACCTGAAGGGACAGTCNATTCTTCCAAGG 328
consensus_14849#2      ACTGTTGTNCGAAGTTTGTNGAAGCTGTGTT--CTNTGGTNNCAGCTCTTCCACTCTA-- 208
                           *       *            * *               *             *  

consensus_14849#0      ACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGA------TTTTT-ACACAG 1054
consensus_14849#3      ACGAATTTCTCCTGGCTCTATGCAGATCGCAGAGATCTATGA------TTTNTTACCCCG 180
consensus_14849#1      ATGAACATGTNAGGATAANTTTCGCAGGGTTGANAANGNTGA------TCTTANAGGCTG 382
consensus_14849#2      -TCAGNNTCTCTGGAGAAGTGATCAGTGGGCAGAATCNGTGAAGGGAANNCTGAGAGATG 267
                          *   * *   *              *     *    ***                 *

consensus_14849#0      TT-TTCGGGCATATAGCTTC-AATGTAAAATGGATATTTTTTTAGCCT-AATGTGCAGCT 1111
consensus_14849#3      TT-TTCGGGCATATAGCTTCCAATGTAAAATGGATATTTTTTTAGCCTGAATGTGCNGCT 239
consensus_14849#1      TTACTTTTGGATC---CNTCCNTTGGGATGTTGANANCTTTGTGGACACCANGTNCCATT 439
consensus_14849#2      CTTNACANGAGGCNATTGANTGATCGAAACNNNACTGCTTCATCAGAGGCANCGGCAGC- 326
                        *      *              *   *     *    **  *       *    *    

consensus_14849#0      GTTAGTTC--CTGG-TAACACTTGGGCTGCTT-GGGCC-TTGGGTGATGTATAATGT--- 1163
consensus_14849#3      GTTAGTTC--CTGGGTAACCCTTGGGCTGCTT-GGGCCCTTGGGTGATGTATAATGT--- 293
consensus_14849#1      TTGTGGCCAACTAGTTGATCCTACAAAGTTTC-NTCCCNNATAGTGGANATTAATGTG-- 496
consensus_14849#2      GTGATTNCA-CGAGACANNGNAGCGGCGAGTCAGGGGTCAAGCGTCTAGCCTGATGCCAC 385
                        *     *  *  *                *            **      * ***    

consensus_14849#0      TTTAT--GACTTGATG---TCTG-GAAATTGAATGAGGAATCCTAGCTAGCTCTAGTTCA 1217
consensus_14849#3      TTTAT--GACTTGATG---TCTG-GAAATTGAATGAGGAAAAA----------------- 330
consensus_14849#1      TNTATTTGGTCCNAAA---TGTNTGGGTTTCAATGAAAATCTTTGCAAACNAATTTCT-- 551
consensus_14849#2      TGTNNGCNGCCNTAANGTANNCCTCGNANTGGNTCAGGTTATTGCTNGCTCGTAATTTGG 445
                       * *          *               *   * *                        

consensus_14849#0      AACTTTAAAAAAAAAATTTTGGCCCTTCATACTGCTTTCTTTTGTTCAATAACCCGTAAA 1277
consensus_14849#3      ------------------------------------------------------------
consensus_14849#1      ------------------------------------------------------------
consensus_14849#2      TACTCNTANG-------------------------------------------------- 455
                                                                                   

consensus_14849#0      AATATGATAAAAAAAAAA 1295
consensus_14849#3      ------------------
consensus_14849#1      ------------------
consensus_14849#2      ------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)