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Oryza sativa
cluster # 14853 cluster # 14853       Sequences # 18       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14853#0 length = 1248 sequences # 7  
consensus_14853#1 length = 607 sequences # 9  
consensus_14853#2 length = 451 sequences # 1  
consensus_14853#3 length = 253 sequences # 1  

consensusID : consensus_14853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1248
fasta sequence
                              [TCTAGAAGATTAGGTTGCTGTAGCCATGACTGTGAGTTGTGACTAGGTTTTTTCAGTGGGCAAGGCAACACCCTACACATGAAGCCTTGAAGAGTTGGTGTATATATATCAGATGACCCTGTTGAGCCTGAACTTACAATTTAGAAAGAACAAGGAAGACAGCAGGTGACACCTTTGCGGACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGAGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACACTTATGGTCAGTTCTTCTTCTTATTGATCAATCGTAATTTGTTGTATTACCAATCACTATCTCGTCCTCTGATCTCCTTTACCAGCTCAGGTTCAGTATGGTTCTTAG-TC-AAAAAAAAG-TTCAGTATGGTATTTAGCATAGCAGATAAATCGACGCATGTAAGGCAATAAAAATCTGCGATGCAGATACAGGCCAAATTATCCTACCATGAAT-TTGGAGTTCAAAAATACTGTGA-CTTGTGGTGTCTGAATTGTTTGAAAAGCAGATTGAAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTGAGGAGGGTATC-AAAGGTGACAG-CGCAAGGGCGGAGAGA-GACATCACCACGAACGGCGCCGCTGCCACCAAGAGCA-CTGAGGGAAGGATTGGC-ATC-AAAGATTGGTGGAGAAAAAGCACTTATGCTTATCTGAATGAACCAGCAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCACA-GGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTACTTTTGCAATCTTCTAAATGGGCAAGCCAATGATAAGCTGAGGCATATTG-CCAATTAGAAAATATGCAAGTGGTATATGCATCAGCAATGCTATGGGTGGAATAAACTACATTGTTTTTAAGTGTATAAGTATGTCCAACCTGAATGGTACTTTAAAGTTAATCATTTTGTAACCTTGTTCCCTTGCTTGGTATAGAAACCA-GCCATTTTAACTTATTATTCAAAAAAAAAAAACAATTTTAGTTGGTGCTTGCAATGATATATCAGAAGCTATTGCCAACACTTCTGTGATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120795             [TCTAGAAGATTAGGTTGCTGTAGCCATGACTGTGAGTTGTGACTAGGTTTTTTCAGTGGGCAAGGCAACACCCTACACATGAAGCCTTGAAGAGTTGGTGTATATATATCAGATGACCCTGTTGAGCCTGAACTTACAATTTAGAAAGAACAAGGAAGACAGCAGGTGACACCTTTGCGGACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGAGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACACTTATGGTCAGTTCTTCTTCTTATTGATCAATCGTAATTTGTTGTATTACCAATCACTATCTCGTCCTCTGATCTCCTTTACCAGCTCAGGTTCAGTATGGTTCTTAG TC AAAAAAAAG TTCAGTATGGTATTTAGCATAGCAGATAAATCGACGCATGTAAGGCAATAAAAATCTGCGATGCAGATACAGGCCAAATTATCCTACCATGAAT TTGGAGTTCAAAAATACTGTGA CTTGTGGTGTCTGAATTGTTTGAAAAGCAGATTGAAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTGAGGAGGGTATC AAAGGTGACAG CGCAAGGGCGGAGAGA GACATCACCACGAACGGCGCCGCTGCCACCAAGAGCA CTGAGGGAAGGATTGGC ATC AAAGATTGGTGGAGAAAAAGCACTTATGCTTATCTGAATGAACCAGCAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCACA GGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTACTTTTGCAATCTTCTAAATGGGCAAGCCAATGATA                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF312357             [                                                                                                                                               GAAAGAACAAGGAAGACAGCAGGTGACACCTTTGCGGACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGAGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACACTTATGGTCAGTTCTTCTTCTTATTGATCAATCGTAATTTGTTGTATTACCAATCACTATCTCGTCCTCTGATCTCCTTTACCAGCTCAGGTTCAGTAGGGTTCTTAG TCAAAAAAAAAG TTCAGTATGGTATTTAGCATAGCAGATAAATCGACGCATGTAAGGCAATAAAAATCTGCGATGCAGATACAGGCCAAATTATCCTACCATGAATNTTGGAGTTCAAAAATACTGTGACCTTGTGGTGTCTGAATTGTTTGAAAAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSC111961            [                                                                                                                                                                 GCAGGTGACACCTTTGCGGACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGAGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACACTTATGGTCAGTTCTTCTTCTTATTGATCAATCGTAATTTGTTGTATTACCAATCACTATCTCGTCCTCTGATCTCCTTTACCAGCTCAGGTTCAGTATGGTTCTTAGTTC AAAAAAAAGTTTCAGTATGGTATTTAGCATAGCAGATAAATCGACGGATTTAAGGCAATAAAAtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI807630             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAAGATTAT CGATCTTCGACCAAATGATAAGGGAGATTCTTGAGGAGGGTATCAAAAGGTGACAG C CAA GGCGGAGAGAGGACATCACCCCG TCGGCGCCGCT CCACCAAGAGCACCTGAGGGAAGGATTGGCAATCAAAAGATTGGTGGAGAAAAA CACTTATGCTTATCTGAATGAACCA CCATGACATCCACGGATGAGAACGCCAGAAGGAAGCACGCCATC AATACATCCCACACGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTACTTTTGCAATCTTCTAAAT GGCAAGCCCATGATAAGCTGAGGCAT                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI798741             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGATTATGCGATCTTCGCACAAATGATAAGGGAGATTCTTGAGGAGGGTATC AAAGGTGACAGCCACAAGGCCGGAGAGA GACTTCCCCACGAACGGC CCGCT CCACCAAGAGCACCTGAGGGAAGGATTGGC ATC AAAGATTGGTGGAGAAAAAGCACTTATGCTTATCTGAATGAACCA CAATGACATCCACGGATGAGAACGCCAGAAGGAAGCACGCCATCAAATACATCCCACA GGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTACTTTT CCATCTTCTAAATGGGCAA CCCATGATAAGCTGAGGCATATTGCCCAATTAGAAAATATGCAAGTGGTATATGCATCACCAATGCTAT GGTGGAATAAACTAC TTGTTTTTAAGTGTATAAGTATGTCCAA CTGAATGGTACTTTAAAGTTAATCATTTTGTAACCTTGTTCCCTTGCTTGGTATAGAAACCA GCCATTTTAACTTATTATTCAAAAAA                                                                                                            ]
[+] EMBL OSS16582A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATGCGATCTTCGAGCAAATNATAAGGGAGATTCTTGAGGAGGGTATC AAAGGTGACAG CGCAAGGGCGGAGAGA GACATCACCACGAACGGCGCCGCTGCCACCAAGAGCA CTNAGGGAAGGATTGGC ATC AAAGATTGGTGGAGAAAAAGCACTTATGCTTATCTGAATGAACCAGCAATGACATCCACGGATGAGAACGGCAGAAGGANGCACGCCATCAAATACATCCCACA GGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTACTTTTGCAATCTTCTAAATGGGCAAGCCAATGATAAGCTGAGGCATATTG GCAATTAGGAAATATGCAAGTGGTATATGCATCAGCAATGCTATGGGTGGATTAACCTACATTGTTTTTAAGTGTATAAGTATGCCCAAC                                                                                                                                                                                                     ]
[+] EMBL AU057129             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATATGCATCAGCAATGCTATGGGTGGAATAAACTACATTGTTTTTAAGTGTATAAGTATGTCCAAACTGAATGGTACTTTAAAGTTAATCATTTTGTAACCTTGTTGCCTTGCGTGGTATAGAAAGCAGGCCATTTTAACTTATTATTCATTGTAAAAAAACAATTTTAGTTGGTGCTTGCAATGATATATCAGAAGCTATTGCCAACACTTCTGTGATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14853#0 TCTAGAAGATTAGGTTGCTGTAGCCATGACTGTGAGTTGTGACTAGGTTTTTTCAGTGGG CAAGGCAACACCCTACACATGAAGCCTTGAAGAGTTGGTGTATATATATCAGATGACCCT GTTGAGCCTGAACTTACAATTTAGAAAGAACAAGGAAGACAGCAGGTGACACCTTTGCGG ACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTA CAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGA GCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACACTTATGGTCAG TTCTTCTTCTTATTGATCAATCGTAATTTGTTGTATTACCAATCACTATCTCGTCCTCTG ATCTCCTTTACCAGCTCAGGTTCAGTATGGTTCTTAGTCAAAAAAAAGTTCAGTATGGTA TTTAGCATAGCAGATAAATCGACGCATGTAAGGCAATAAAAATCTGCGATGCAGATACAG GCCAAATTATCCTACCATGAATTTGGAGTTCAAAAATACTGTGACTTGTGGTGTCTGAAT TGTTTGAAAAGCAGATTGAAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTG AGGAGGGTATCAAAGGTGACAGCGCAAGGGCGGAGAGAGACATCACCACGAACGGCGCCG CTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTT ATGCTTATCTGAATGAACCAGCAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACG CCATCAAATACATCCCACAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAAC ATAATACTACTACTTTTGCAATCTTCTAAATGGGCAAGCCAATGATAAGCTGAGGCATAT TGCCAATTAGAAAATATGCAAGTGGTATATGCATCAGCAATGCTATGGGTGGAATAAACT ACATTGTTTTTAAGTGTATAAGTATGTCCAACCTGAATGGTACTTTAAAGTTAATCATTT TGTAACCTTGTTCCCTTGCTTGGTATAGAAACCAGCCATTTTAACTTATTATTCAAAAAA AAAAAACAATTTTAGTTGGTGCTTGCAATGATATATCAGAAGCTATTGCCAACACTTCTG TGATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 607
fasta sequence
                              [CAATTTAGAAAGACCAAGGAAGACATCAGGTGNCACCTTTGCGGACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGAGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACAC-TTATGATTG-AAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTGAGGA-GGGTATCAAAGGTGACAGCGCAAGGGCGGAGAG-AGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTTATGC--TTATCT-GAATGAA-CCAG-CAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCA-CAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTAC-TTTTGCAATCTTCTAAATGGGCAAGCCAATGATAAGCTTAGGCATATTNGCAAATTAGAAATATGCAAGTGGTATATGCATCAGCAATG]

[-] EMBL CA763311             [CAATTTAGAAAGACCAAGGAAGACATCAGGTGNCACCTTTGCGGACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGAGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACAC TTATGATTG AAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTGAGGA GGGTATCAAAGGTGACAGCGCAAGGGCGGAGAG AGACATCACCACGAAGGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTTATGC  TTATCT GAATGAA CCAG CAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCA CAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTAC TTTTGCAATCTTCTAAATGGGCAAGCCAATGATAA                                                      ]
[+] EMBL OS1321716            [                          CAGGTGACACCTTTGCGGACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGNGATGGAAGANGAGGAGCAGCGCCTCACCGCCGAGAAGGANGCTGCANGANTCAAAGCCAAGACAC TTATGATTG NAGATTATGCGATCTTCGAGCAAATGNTAAGG                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU057128             [                                  ACCTTTGCGGACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGAGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACAC TTATGATTG AAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTGAGGA GGGTATCAAAGGTGACAGCGCAAGGGCGGAGAG AGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTTATGC  TTATCT GAATGAA CCAG CAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCA CAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTAC TTTTGCAATCTTCTAAATGGGCAAGCCAATGATA                                                       ]
[+] EMBL CA764102             [                                                                                                                                                                AGGAGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCTAAGACAC TTATGATTG AAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTGAGGA GGGTATCAAAGGTGACAGCGCAAGGGCGGAGAG AGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTTATGC  TTATCT GAATGAA CCAG CAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCA CAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTAC TTTTGCAATCTTCTAAATGGGCAAGCCAATGATA                                                       ]
[+] EMBL AU165691             [                                                                                                                                                                       GCGCCTCACCGCCNAGAAGGAAGCTGCAAGAATCAAAGCCAAGACAC TTATGATTG AAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTGAGGA GGGTATCAAAGGTGACAGCGCAAGGGCGGAGAG AGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTTATGC  TTATCT GAATGAA CCAG CAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCA CAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTAC TTTTGCAATCTTCTAAATGGGCAAGCCAATGATA                                                       ]
[+] EMBL C73413               [                                                                                                                                                                       GCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACAC TTATGATTG AAGATTATGCGATCTTCGAGCAAATGATAAGGGAGATTCTTGAGGA GGGTATCAAAGGTGACAGCGCAAGGGCGGAGAG AGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTTATGC  TTATCT GAATGAA CCAG CAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCA CAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTACTTTTTGCAATCTTCTAAATGGGCAAGCCAATGATAAGCTTAGGCATATTNGCAAATTAGAAATATGCAAGTGGTATATGCATCAGCAATG]
[+] EMBL BM421573             [                                                                                                                                                                                                                 nACACTTTATGATTGAAAGATTATTCGATCTTCGA CAAATGATAAGGGAGATTCTTGAGGAGGGGTATC AAGGTGACAGCGCAAGGCCGGAGAGTAGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTTATGC  TTATCT GAATGAA CCAG CAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCACCAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTAC TTTTGCAATCTTCTAAATGGGCAAGCCCATGATA                                                       ]
[+] EMBL CA754761             [                                                                                                                                                                                                                                                             AAGGGAGATTCTTGAGGA GGGTATCAAAGGTGACAGCGCAAGGGCGGAGAG AGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTTATGC  TTATCT GAATGAA CCAG CAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCA CAGGAGAGATGCATGAACTTCTTCTCATCGATTCCGAGTCAACATAATACTACTAC TTTTGCAATCTTCTAAATGGGCAAGCCAATGATA                                                       ]
[+] EMBL AU161495             [                                                                                                                                                                                                                                                                                                                                                                                                  tTTATGCCTTTATCTGGAATGAACCCAGCCAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCA CAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAACATAATACTACTAC TTTTGCAATCTTCTAAATGGGCAAGCCAATGATA                                                       ]


>consensus_14853#1 CAATTTAGAAAGACCAAGGAAGACATCAGGTGNCACCTTTGCGGACACACCAAAACTGCC GGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACAAGGGCA GAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGGAGCAGCGCCTCACCGCC GAGAAGGAAGCTGCAAGAATCAAAGCCAAGACACTTATGATTGAAGATTATGCGATCTTC GAGCAAATGATAAGGGAGATTCTTGAGGAGGGTATCAAAGGTGACAGCGCAAGGGCGGAG AGAGACATCACCACGAACGGCGCCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATC AAAGATTGGTGGAGAAAAAGCACTTATGCTTATCTGAATGAACCAGCAATGACATCCACG GATGAGAACGGCAGAAGGAAGCACGCCATCAAATACATCCCACAGGAGAGATGCATGAAC TTCTTCTCATCGATTCCAAGTCAACATAATACTACTACTTTTGCAATCTTCTAAATGGGC AAGCCAATGATAAGCTTAGGCATATTNGCAAATTAGAAATATGCAAGTGGTATATGCATC AGCAATG



consensusID : consensus_14853#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence
                              [ACGAGCCAAGGGGGGGCAGAGATCGAGCAGTTTTGGAGGATAAAGGAGATGGAAGAAGAGTATCAGCGCCTCACCTCCGATAAGGAAGCTGCAAGAATCAAAGCCAAAACGCTTATGATTGAACATTCTCCGATCTTCGAGCAAATGATAACGGACATTCTTGAGGAGGGTTTCAAAGGTGTCAGCGCAAGGGCGGAGAAAGACATCACCACGAACGGGGCCGCTGCCACCAAGAGCACTGAGGGAAGGTTTGGCATCAAAGTTTGGTGGAGAAAAAGCATTTATGCTTATTTGAATGAACCAACAATGTCATCCCCGGATGAGACCGGCAGAAGGAAGCGCGCCATCAAATACATCCCACAGGAGAGATGCATGAACTTTTTTTTATCGATTCCAAGTCAACATAATACTTCTGCTTTTGCAATTTTTTAAATGGGCAACCCAATGATAA]

[-] EMBL CA763312             [ACGAGCCAAGGGGGGGCAGAGATCGAGCAGTTTTGGAGGATAAAGGAGATGGAAGAAGAGTATCAGCGCCTCACCTCCGATAAGGAAGCTGCAAGAATCAAAGCCAAAACGCTTATGATTGAACATTCTCCGATCTTCGAGCAAATGATAACGGACATTCTTGAGGAGGGTTTCAAAGGTGTCAGCGCAAGGGCGGAGAAAGACATCACCACGAACGGGGCCGCTGCCACCAAGAGCACTGAGGGAAGGTTTGGCATCAAAGTTTGGTGGAGAAAAAGCATTTATGCTTATTTGAATGAACCAACAATGTCATCCCCGGATGAGACCGGCAGAAGGAAGCGCGCCATCAAATACATCCCACAGGAGAGATGCATGAACTTTTTTTTATCGATTCCAAGTCAACATAATACTTCTGCTTTTGCAATTTTTTAAATGGGCAACCCAATGATAA]


>consensus_14853#2 ACGAGCCAAGGGGGGGCAGAGATCGAGCAGTTTTGGAGGATAAAGGAGATGGAAGAAGAG TATCAGCGCCTCACCTCCGATAAGGAAGCTGCAAGAATCAAAGCCAAAACGCTTATGATT GAACATTCTCCGATCTTCGAGCAAATGATAACGGACATTCTTGAGGAGGGTTTCAAAGGT GTCAGCGCAAGGGCGGAGAAAGACATCACCACGAACGGGGCCGCTGCCACCAAGAGCACT GAGGGAAGGTTTGGCATCAAAGTTTGGTGGAGAAAAAGCATTTATGCTTATTTGAATGAA CCAACAATGTCATCCCCGGATGAGACCGGCAGAAGGAAGCGCGCCATCAAATACATCCCA CAGGAGAGATGCATGAACTTTTTTTTATCGATTCCAAGTCAACATAATACTTCTGCTTTT GCAATTTTTTAAATGGGCAACCCAATGATAA



consensusID : consensus_14853#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence
                              [AAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACANGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATNGAAGAAGAGGNGCAGCGNCTNACCCNCGAGAAGGNAGCTGCAAGAATCAAAGCCNNGNCACTTTATGGATTGAAGATTATTCGATCTTNGAGCAAATNTATANGGGTGNTTTCTTNTAGGAGGGTNTTAAAGGTTACAGCGCAAGGGCGGT]

[+] EMBL D42990               [AAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATCACANGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATNGAAGAAGAGGNGCAGCGNCTNACCCNCGAGAAGGNAGCTGCAAGAATCAAAGCCNNGNCACTTTATGGATTGAAGATTATTCGATCTTNGAGCAAATNTATANGGGTGNTTTCTTNTAGGAGGGTNTTAAAGGTTACAGCGCAAGGGCGGT]


>consensus_14853#3 AAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTACAGCATC ACANGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATNGAAGAAGAGGNGCAGCGN CTNACCCNCGAGAAGGNAGCTGCAAGAATCAAAGCCNNGNCACTTTATGGATTGAAGATT ATTCGATCTTNGAGCAAATNTATANGGGTGNTTTCTTNTAGGAGGGTNTTAAAGGTTACA GCGCAAGGGCGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14853#0      TCTAGAAGATTAGGTTGCTGTAGCCATGACTGTGAGTTGTGACTAGGTTTTTTCAGTGGG 60
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      CAAGGCAACACCCTACACATGAAGCCTTGAAGAGTTGGTGTATATATATCAGATGACCCT 120
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      GTTGAGCCTGAACTTACAATTTAGAAAGAACAAGGAAGACAGCAGGTGACACCTTTGCGG 180
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ----------------CAATTTAGAAAGACCAAGGAAGACATCAGGTGNCACCTTTGCGG 44
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      ACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTA 240
consensus_14853#3      -------AAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTA 53
consensus_14853#1      ACACACCAAAACTGCCGGCCATAGCCCATATTCCCACAAGAAGATGGCGATCCCGGTTTA 104
consensus_14853#2      -----------------------------------------------------------A 1
                                                                                  *

consensus_14853#0      C-AGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGG 299
consensus_14853#3      C-AGCATCACANGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATNGAAGAAGAGG 112
consensus_14853#1      C-AGCATCACAAGGGCAGAGATCGAGGAGTTCTGGAGGAGAAAGGAGATGGAAGAAGAGG 163
consensus_14853#2      CGAGCCAAGGGGGGGCAGAGATCGAGCAGTTTTGGAGGATAAAGGAGATGGAAGAAGAGT 61
                       * ***       ************** **** ******* ********* ********* 

consensus_14853#0      AGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACACTT-ATGGTC 358
consensus_14853#3      NGCAGCGNCTNACCCNCGAGAAGGNAGCTGCAAGAATCAAAGCCNNGNCACTTTATGGA- 171
consensus_14853#1      AGCAGCGCCTCACCGCCGAGAAGGAAGCTGCAAGAATCAAAGCCAAGACACTT-ATGA-- 220
consensus_14853#2      ATCAGCGCCTCACCTCCGATAAGGAAGCTGCAAGAATCAAAGCCAAAACGCTT-ATGA-- 118
                         ***** ** ***  *** **** *******************    * *** ***   

consensus_14853#0      AGTTCTTCTTCTTATTGATCAATCGTAATTTGTTGTATTACCAATCACTATCTCGTCCTC 418
consensus_14853#3      -----------TTGAAGATTATTCGATCTTNGAGCAAATNTATANGGGTGNTTTCTTNTA 220
consensus_14853#1      -----------TTGAAGATTATGCGATCTTCGAGCAAATG-ATAAGGGAGATTC--TTGA 266
consensus_14853#2      -----------TTGAACATTCTCCGATCTTCGAGCAAATGATAACGGACATTCT---TGA 164
                                  **    **    **   ** *    * *    *                

consensus_14853#0      TGATCTCCTTTACCAGCTCAGGTTCAGTATGGTTCTTAGTCAAAAAAAAGTTCAGTATGG 478
consensus_14853#3      GGAGGGTNTTAAAGGTTACAGCGCAAGGGCGGT--------------------------- 253
consensus_14853#1      GGAGGGTATCAAAGGTGACAGCGCAAGGGCGGAGAG-AGACATCACCACGAACGGCGCCG 325
consensus_14853#2      GGAGGGTTTCAAAGGTGTCAGCGCAAGGGCGGAGAA-AGACATCACCACGAACGGGGCCG 223
                        **     *  *      ***    **   **                            

consensus_14853#0      TATTTAGCATAGCAGATAAATCGACGCATGTAAGGCAATAAAAATCTGCGATGCAGATAC 538
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      CTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCACTT 385
consensus_14853#2      CTGCCACCAAGAGCACTGAGGGAAGGTTTGGCATCAAAGTTTGGTGGAGAAAAAGCATTT 283
                                                                                   

consensus_14853#0      AGGCCAAATTATCCTACCATGAATTTGGAGTTCAAAAATACTGTGACTTGTGGTGTCTGA 598
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ATGCTTATCTGAATGAACCAGCAATGACATCCACGGATGAGAACGGCAGAAGGAAGCACG 445
consensus_14853#2      ATGCTTATTTGAATGAACCAACAATGTCATCCCCGGATGAGACCGGCAGAAGGAAGCGCG 343
                                                                                   

consensus_14853#0      ATTGTTTGAAAAGCAGATTGAAGAT-TATGCGATCTTCGAGCAAATGATAAGGGAGATTC 657
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      CCATCAAATACATCCCACAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTCAAC 505
consensus_14853#2      CCATCAAATACATCCCACAGGAGAGATGCATGAACTTTTTTTTATCGATTCCAAGTCAAC 403
                                                                                   

consensus_14853#0      TTGAGGAGGGTATCAAAGGTGACAGCGCAAGGGCGGAGAGAGACATCACCACGAACGGCG 717
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ATAATACTACTACTTTTGCAATCTTCTAAATGGGCAAGCCAATGATAAGCTTAGGCATAT 565
consensus_14853#2      ATAATACTTCTGCTTTTGCAATTTTTTAAATGGGCAACCCAATGATAA------------ 451
                                                                                   

consensus_14853#0      CCGCTGCCACCAAGAGCACTGAGGGAAGGATTGGCATCAAAGATTGGTGGAGAAAAAGCA 777
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      TNGCAAATTAGAAATATGCAAGTGGTATATGCATCAGCAATG------------------ 607
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      CTTATGCTTATCTGAATGAACCAGCAATGACATCCACGGATGAGAACGGCAGAAGGAAGC 837
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      ACGCCATCAAATACATCCCACAGGAGAGATGCATGAACTTCTTCTCATCGATTCCAAGTC 897
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      AACATAATACTACTACTTTTGCAATCTTCTAAATGGGCAAGCCAATGATAAGCTGAGGCA 957
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      TATTGCCAATTAGAAAATATGCAAGTGGTATATGCATCAGCAATGCTATGGGTGGAATAA 1017
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      ACTACATTGTTTTTAAGTGTATAAGTATGTCCAACCTGAATGGTACTTTAAAGTTAATCA 1077
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      TTTTGTAACCTTGTTCCCTTGCTTGGTATAGAAACCAGCCATTTTAACTTATTATTCAAA 1137
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      AAAAAAAAACAATTTTAGTTGGTGCTTGCAATGATATATCAGAAGCTATTGCCAACACTT 1197
consensus_14853#3      ------------------------------------------------------------
consensus_14853#1      ------------------------------------------------------------
consensus_14853#2      ------------------------------------------------------------
                                                                                   

consensus_14853#0      CTGTGATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1248
consensus_14853#3      ---------------------------------------------------
consensus_14853#1      ---------------------------------------------------
consensus_14853#2      ---------------------------------------------------
                                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)