These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 2112 fasta sequence [CCTTTTCCCTCTCTTCCTCCGCTTATTAAAAGGCGGCGTCCCTCCCCGTGGTGCTCGCCGCCGTATTCAAGCGGAGGAAGAGAGAGAGAGAGAGAGAATCAAGGCAGTAGTCGTCTTCCTCTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCG----CCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGCCCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCCGTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAACCTCGGCGGGATGGGGTGCAGTGCCGGCTTGCTGTCCGTCGATCTCGCCAAGGACTTGCTGCAGGTGCACCCAAACTCGTACGCGCTGGTGGTCAGCATGGAGAACATCACGCTCAATTGGTACTTTGGCAACAACCGGTCGATGCTCGTGTCGAATTGCCTGTTCCGGATGGGCGGCGCCGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGGAGGTCCAAGTATGAGCTTGTGCACACCGTGCGCACGCACAAGGGCGCCAACG-ACAAGTGCTTTGGCTGTGTCACCCAGGAGGAAGACGAGATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT--GGAGTTGACT-GACT-GGCACATGG-AGCCATC-TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG-AAGCGGGACAGGATCTGGC-AGATTGC-ATTTGGATCTGGTTTCAAG-TG-CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG-CCTTGTTTGTCTCAAGAGTAGT-AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA-TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT-GCAA-TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA-G-GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTT-CATGTGACGTTTATTCATCGTTACCTGATTGTGATTGCCCTTGTAGCACTGTCACATTCTCATTAAATTTATCTCATTAAATT] [+] EMBL AK101377 [CCTTTTCCCTCTCTTCCTCCGCTTATTAAAAGGCGGCGTCCCTCCCCGTGGTGCTCGCCGCCGTATTCAAGCGGAGGAAGAGAGAGAGAGAGAGAGAATCAAGGCAGTAGTCGTCTTCCTCTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCGGTATCCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGCCCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCCGTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAACCTCGGCGGGATGGGGTGCAGTGCCGGCTTGCTGTCCGTCGATCTCGCCAAGGACTTGCTGCAGGTGCACCCAAACTCGTACGCGCTGGTGGTCAGCATGGAGAACATCACGCTCAATTGGTACTTTGGCAACAACCGGTCGATGCTCGTGTCGAATTGCCTGTTCCGGATGGGCGGCGCCGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGGAGGTCCAAGTATGAGCTTGTGCACACCGTGCGCACGCACAAGGGCGCCAACG ACAAGTGCTTTGGCTGTGTCACCCAGGAGGAAGACGAGATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTCGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAAAACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTT CATGTGACGTTTATTCATCGTTACCTGATTGTGATTGCCCTTGTAGCACTGTCACATTCTCATTAAATTTATCTCATTAAAT ] [+] EMBL CB637965 [ GAGAGAGAGAGAGAATCAAGGCAGTAGTCGTCTTCCTCTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCG CCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGC ] [+] EMBL CB648039 [ AGAATCCCGGCAGTAGTCGTCTTCCTCTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCG CCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGCCCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCCGTCGCTGTCCGCCCTGGTTGTGAACCACTACAAGCTGAGG ] [+] EMBL CB650716 [ CGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGCCTCG CCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGAGCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGCGCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCAGCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCACCCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCCCGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTCCTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGAGGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGCCCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGGTGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCCGTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAACCTCGGCGGGATGGGGTGCAGTGCCGGCTTGCTGTCCGTCGATCTCGCCAAG ] [+] EMBL CA753655 [ CCGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGGAGGTCCAAGTATGAGCTTGTGCACACCGTGCGCACGCACAAGGGCGCCAACG ACAAGTGCTTTGGCTGTGTCACCCAGGAGGAAGACGAGATCGGCAAGATTGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTCGGGCCGCTCGTGCTCCCATTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCGAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAG ] [+] EMBL CB627416 [ aggCGCCATCCTGCTGTCCATCAAGAAGCCTGACCGCCGGAGGTCCAAGTATGAGCTTGTGCACACCGTGCGCACGCACAAGGGCGCCAACGCACAAGTGCTTTGGCTGTGTCACCCAGGAGGAAGACGAGATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAA ] [-] EMBL CB627417 [ ATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGACGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGG GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTT CATGTGACGTTTA ] [-] EMBL CB618410 [ GAGACGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCTGCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA GNGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATAAAGTCAGATTGGAGAAAACAAT ] [-] EMBL CB650717 [ TGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTT CATGTGACGTTTATTCATCGTTGCCTGATTGTGATTGCCCTTGTAGCACTGTCACATTCTCATTAAATTTATCTCATTAAATT] [-] EMBL CB627603 [ AGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAAATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCccagc ] [+] EMBL OS1321635 [ TGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTT GGAGTTGACT GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGNTCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATGCCCTTGTTTGTCTCAAGAGTAGTAAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCANGGTTCTAAATCCAT ] [+] EMBL BM419218 [ ACTTTGGGAGTTGACTGGACTGGGCACATGGAAGCCATCTTAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCACTTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGGCAACTTGTTCCAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACCNTTGGAGTCTT CATGTGACGTTTAaaaaa ] [-] EMBL CB637966 [ T GACT GGCACATGG AGCCATC TAGGATGACACTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTTACATGTGA ] [-] EMBL CB638345 [ ACATCGAGCAGCTCACTTTGGTATGAGCTGGCGTACACCGAGGCGAAGGGGAGGATCAGG AAGCGGGACAGGATCTGGC AGATTGC ATTTGGATCTGGTTTCAAG TG CAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGAAAAATCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTTACATGTGA ] [+] EMBL AU102029 [ CCGANGCGAAGGGGAGGATCAGGAAAGCGGGACAGGATCTGGCAAGATTGCAATTTGGATCTGGTTTCAAGTTGCCAACAGCGCAGTCTGGAANGCNCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATG CCTTGTTTGTCTCAAGAGTAGT AAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCA TTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTT GCAA TTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAA G GGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAAaa ] consensusID : consensus_14855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 747 fasta sequence [TCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTTGGAGTTGACTGACTGGCACATGGAGCCATCTAGGATGACCCTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACCCCGAGGCGAAGGGGAGGATCAGGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATCCCTTGTTTGTCTCAAGAGTAGTAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCATTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGCAATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAACCAATTGGGGTCTTCATGTGCCGTTTAAAAAAAAAAAAAAAACAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT] [-] EMBL CB648040 [TCCTCAAGATGAAGATCAAGCCATACATTCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCTGGATGAGCTGGAGAAGAACTTGGAGTTGACTGACTGGCACATGGAGCCATCTAGGATGACCCTGTACCGGTTTGGCAACACATCGAGCAGCTCACTCTGGTATGAGCTGGCGTACCCCGAGGCGAAGGGGAGGATCAGGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCAAACAGTGAATCCAGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGTTGGAAATGCATGACATGAAATCCCTTGTTTGTCTCAAGAGTAGTAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCATTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGCAATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAACCAATTGGGGTCTTCATGTGCCGTTTAAAAAAAAAAAAAAAACAAAAAAGGA ] [-] EMBL BE040481 [ TTTGGATCTGGTTTCAAGTGCAACAGCCCAGTTTGGAAGGCGCTGCGAACAGTGAACCCGGCGAAGGAAAAAAACCCCTGGATGGATGAAATTGACAACTTCCCGGTTGAAGTTCCAAAAATATCAAAGGTTGGAAATGCATGACATGAAATCCCTTGTTTGTCTCAAAAGTAGTAAAAAGTATGGTGGGTTGAGTGGCATTGTGCATTGGCATTGGTAGGGCAGGAAGTTCATC TCAGGGTTCTAAACCCATTTGCAATTGTTCAAAAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAAAAAACTGGAGCTGATTCAATTAGGTAAAAAAAGGGTGTGTTTTTTTCACTTAGGGCTGTCTGAAAAAGCTGTATTTATTCAAATTGGAGAAAACAATTGGAGTCTTCATGTGACGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT] consensusID : consensus_14855#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GGCAACACATTGGAGCAGCTCACCTCTGTATGGACTGGCGTACACCGAGCGAAGGGGAGGATCAAGGAACCGGGACAGGATCTGCAAGATTGCATTTGGATCTGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCGAACAGGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCCAAGATATCAAAGGTTGGAAATGCATGACATGAAATGCCTTGTTTGTCTCACAGAGTAGTAAAAAGTATGGTGGTTGAGTGGCACTTGTGCACTTGGCACTTGGTAGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGCACATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACCATTGGAGTCTTCATGTGACGTTTATTCATCGTTGCCTAAAAAAAAAA] [+] EMBL BI809856 [GGCAACACATTGGAGCAGCTCACCTCTGTATGGACTGGCGTACACCGAGCGAAGGGGAGGATCAAGGAACCGGGACAGGATCTGCAAGATTGCATTTGGATCTGTTTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCGAACAGGTGAACCCGGCGAAGGAGAAGAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCCAAGATATCAAAGGTTGGAAATGCATGACATGAAATGCCTTGTTTGTCTCACAGAGTAGTAAAAAGTATGGTGGTTGAGTGGCACTTGTGCACTTGGCACTTGGTAGGCAGGAAGTTCATCTTCAGGGTTCTAAATCCATTTGCACATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAACTTTAAAAAGAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACTTAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACCATTGGAGTCTTCATGTGACGTTTATTCATCGTTGCCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14855#0 CCTTTTCCCTCTCTTCCTCCGCTTATTAAAAGGCGGCGTCCCTCCCCGTGGTGCTCGCCG 60 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CCGTATTCAAGCGGAGGAAGAGAGAGAGAGAGAGAGAATCAAGGCAGTAGTCGTCTTCCT 120 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CTCCTCTCGCCGCCGCATCCGACCGGAGAAAGATCCCTTCTTTCCCTCCTCCAAGCCCGC 180 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CTCGCCAGAGATGGAGACCTCGGCGGCGGCGGCGCCCAATGGCGGCGCGGCGGCGGCGGA 240 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GCAGCAGCAGCGGCGTCGGCTGCCGGACTTCCAGCAGTCGGTGAGGCTCAAGTACGTGAA 300 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GCTGGGGTACCACTACCTCATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTGATGGC 360 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GCTGGTGGCCGTGCAGCTCTCCACCGTGTCCCCGGGCGACATCGCCGACCTGTGGGAGCA 420 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GCTCCGCTTCAACCTCCTCTCCGTCGTCGCCTGCTCCACCCTCCTCGTCTTCCTCTCCAC 480 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CCTCTACTTCCTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTTCGCCTGCTACAAGCC 540 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CGACCCCCAGCGCAAGTGCACCCGCGAGACCTTCATGCGCTGCTCCAGCCTCACCGGCTC 600 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CTTCACCGACGCCAACCTCGACTTCCAGCGCAAGATCCTCGAGCGCTCCGGCCTCGGCGA 660 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GGACACCTACCTCCCTCCCGCCGTGCTGCGCGTCCCGCCCAACCCGTGCATGGACGAGGC 720 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CCGCAAGGAGGCCCGCACCGTCATGTTCGGCGCCATTGACCAGCTTCTTGAGAAGACGGG 780 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 TGTGAAGCCCAAGGACATTGGTGTGGTTGTCGTCAATTGCAGCTTGTTCAACCCGACGCC 840 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GTCGCTGTCCGCCATGGTTGTGAACCACTACAAGCTGAGGGGGAATGTCATCAGCTACAA 900 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CCTCGGCGGGATGGGGTGCAGTGCCGGCTTGCTGTCCGTCGATCTCGCCAAGGACTTGCT 960 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GCAGGTGCACCCAAACTCGTACGCGCTGGTGGTCAGCATGGAGAACATCACGCTCAATTG 1020 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GTACTTTGGCAACAACCGGTCGATGCTCGTGTCGAATTGCCTGTTCCGGATGGGCGGCGC 1080 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CGCCATCCTGCTGTCGAACAGGCGGTCCGACCGCCGGAGGTCCAAGTATGAGCTTGTGCA 1140 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CACCGTGCGCACGCACAAGGGCGCCAACGACAAGTGCTTTGGCTGTGTCACCCAGGAGGA 1200 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 AGACGAGATCGGCAAGATCGGCGTGTCGCTCTCCAAGGACCTGATGGCGGTGGCCGGAGA 1260 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 CGCGCTGAAGACGAACATCACCACCCTTGGGCCGCTCGTGCTCCCGTTGTCGGAGCAGCT 1320 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 ------------------------------------------------------------ consensus_14855#0 GCTCTTCATGGCCACATTGGTTGCCAAGAAGGTCCTCAAGATGAAGATCAAGCCATACAT 1380 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 --------------------------------TCCTCAAGATGAAGATCAAGCCATACAT 28 consensus_14855#0 TCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCT 1440 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 TCCCGATTTCAAGCTGGCATTTGAGCATTTCTGCATCCATGCCGGTGGCCGTGCCGTGCT 88 consensus_14855#0 GGATGAGCTGGAGAAGAACTTGGAGTTGACTGACTGGCACATGGAGCCATCTAGGATGAC 1500 consensus_14855#2 ------------------------------------------------------------ consensus_14855#1 GGATGAGCTGGAGAAGAACTTGGAGTTGACTGACTGGCACATGGAGCCATCTAGGATGAC 148 consensus_14855#0 ACTGTACCGGTTTGGCAACACATCG-AGCAGCTCACTCTGGTATGAGCTGGCGTACACCG 1559 consensus_14855#2 -------------GGCAACACATTGGAGCAGCTCACCTCTGTATGGACTGGCGTACACCG 47 consensus_14855#1 CCTGTACCGGTTTGGCAACACATCG-AGCAGCTCACTCTGGTATGAGCTGGCGTACCCCG 207 ********** * ********** ***** ********* *** consensus_14855#0 AGGCGAAGGGGAGGATCA-GGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGT 1618 consensus_14855#2 AG-CGAAGGGGAGGATCAAGGAACCGGGACAGGATCTGCAAGATTGCATTTGGATCTG-T 105 consensus_14855#1 AGGCGAAGGGGAGGATCA-GGAAGCGGGACAGGATCTGGCAGATTGCATTTGGATCTGGT 266 ** *************** **** ************** ****************** * consensus_14855#0 TTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCAAACAG-TGAATCCAGCGAAGGAGAA 1677 consensus_14855#2 TTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCGAACAGGTGAACCCGGCGAAGGAGAA 165 consensus_14855#1 TTCAAGTGCAACAGCGCAGTCTGGAAGGCGCTGCAAACAG-TGAATCCAGCGAAGGAGAA 325 ********************************** ***** **** ** *********** consensus_14855#0 GAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGT 1737 consensus_14855#2 GAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCCAAGATATCAAAGGT 225 consensus_14855#1 GAACCCCTGGATGGATGAGATTGACAACTTCCCGGTTGAAGTTCCAAAGATATCAAAGGT 385 ********************************************* ************** consensus_14855#0 TGGAAATGCATGACATGAAATGCCTTGTTTGTCTCA-AGAGTAGTAAAAAGTATGGTGGG 1796 consensus_14855#2 TGGAAATGCATGACATGAAATGCCTTGTTTGTCTCACAGAGTAGTAAAAAGTATGGTGG- 284 consensus_14855#1 TGGAAATGCATGACATGAAATCCCTTGTTTGTCTCA-AGAGTAGTAAAAAGTATGGTGGG 444 ********************* ************** ********************** consensus_14855#0 TTGAGTGGCA-TTGTGCA-TTGGCATTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAA 1854 consensus_14855#2 TTGAGTGGCACTTGTGCACTTGGCACTTGGTAGGCAGGAAGTTCATCTTCAGGGTTCTAA 344 consensus_14855#1 TTGAGTGGCA-TTGTGCA-TTGGCATTGGTAGGGCAGGAAGTTCATCTTCAGGGTTCTAA 502 ********** ******* ****** * * **************************** consensus_14855#0 ATCCATTTGCA-ATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAA 1913 consensus_14855#2 ATCCATTTGCACATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAA 404 consensus_14855#1 ATCCATTTGCA-ATTGTTCAAGAGTTCTTTGGTTTTCAGTTGTAGCATCTGTGAGGGGAA 561 *********** ************************************************ consensus_14855#0 CTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACT 1973 consensus_14855#2 CTTTAAAAAGAAA-CTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACT 463 consensus_14855#1 CTTTAAAAAGAAAACTGTAGCTGATTCAATTAGGTAGAAAAAGGGTGTGTTTTCTTCACT 621 ************* ********************************************** consensus_14855#0 TAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACAATTGGAGTCTTCATG 2033 consensus_14855#2 TAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAAACCATTGGAGTCTTCATG 523 consensus_14855#1 TAGGGCTGTCTGATAATGCTGTATTTATTCAGATTGGAGAAACCAATTGGGGTCTTCATG 681 ****************************************** * ***** ********* consensus_14855#0 TGACGTTTATTCATCGTTACCTGATTGTGATTGCCCTTGTAGCACTGTCACATTCTCATT 2093 consensus_14855#2 TGACGTTTATTCATCGTTGCCTAAAAAAAAAA---------------------------- 555 consensus_14855#1 TGCCGTTTAAAAAAAAAAAAAAAACAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAA 741 ** ****** * * * consensus_14855#0 AAATTTATCTCATTAAATT 2112 consensus_14855#2 ------------------- consensus_14855#1 AAAACT------------- 747 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||