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Oryza sativa
cluster # 14857 cluster # 14857       Sequences # 18       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14857#0 length = 1296 sequences # 17  
consensus_14857#1 length = 397 sequences # 1  

consensusID : consensus_14857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1296
fasta sequence
                              [AAATATCTCCATCGCGATCTCCATGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGCGCTCCTCGCCTCCTTCTCCTCCTCCGCCGCCGCCGCCGGCTCCGGCGT-CTCGGGCCTCTTCGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCGGCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGATCGAGAGGTTCCTGATGGAGGAGGGCCCCGCGGCGG-AGGA-GGGGGTCGGCGCGGAGGA-TTTCTTCGACGCGC-TGCTCGTCGACGGCGGGGAGGAGGAGGAGGAAGAAGAGGGGAAGGGGAG-TGAGGCGGGGGGAAGCACGGATGGGGATTCCGGGAAGGAGAATGAGGTGGCTACCCCGGACGCGGAGAAGGAGGATGTGGAGGCGGAGGTGGATGGCGATGATCCCATGAGCAAGAAGAAGAGGAGGCAGATGAGAAATAGGGATTCTGCCATGAAATCGAGGGAGAGGAAGAAGATGTATGTTAAGGACCTAGAGACTAAGAGCAAGTATCTAGAGGCCGAGTGTCGTCGCCTCAGCTACGCGCTTCAGTGCTGCGCAGCTGAGAACATGGCGCTGCGCCAGAGCTTGTTGAAGGATAGGCCTGTCGGTGCCGCCACAGCCATGCAGGAGTCTGCCGTACTCACGGAAACCCTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAGCATCGTGTGCCTACT-CCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAATCTGGCTTTGTTGAAAAAATTGCTGGCTTCTCATCATGTCGGAAGATTTACAGTTGCTCCTATACTCCTACTTGCCAGGCTCT-CT-GGAAGTGTATGGCAGTAAAAAACAGGTATATTGTTCCTCAGCAGTATTTGCCTTGATGTGAGTAAATGAAACAAATAGACAAAAAAAACAAA]

[+] EMBL AK107021             [AAATATCTCCATCGCGATCTCCATGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGCGCTCCTCGCCTCCTTCTCCTCCTCCGCCGCCGCCGCCGGCTCCGGCGT CTCGGGCCTCTTCGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCGGCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGGTCGAGAGGTTCCTGATGGAGGAGGGCCCCGCGGCGG AGGA GGGGGTCGGCGCGGAGGA TTTCTTCGACGCGC TGCTCGTCGACGGCGGGGAGGAGGAGGAGGAAGAAGAGGGGAAGGGGAG TGAGGCGGGGGGAAGCACGGATGGGGATTCCGGGAAGGAGAATGAGGTGGCTACCCCGGACGCGGAGAAGGAGGATGTGGAGGCGGAGGTGGATGGCGATGATCCCATGAGCAAGAAGAAGAGGAGGCAGATGAGAAATAGGGATTCTGCCATGAAATCGAGGGAGAGGAAGAAGATGTATGTTAAGGACCTAGAGACTAAGAGCAAGTATCTAGAGGCCGAGTGTCGTCGCCTCAGCTACGCGCTTCAGTGCTGCGCAGCTGAGAACATGGCGCTGCGCCAGAGCTTGTTGAAGGATAGGCCTGTCGGTGCCGCCACAGCCATGCAGGAGTCTGCCGTACTCACGGAAACCCTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAGCATCGTGTGCCTACT CCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTCCATGGGAGGCGTTGGAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCCTTTTTTGGTTCCCTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGT                                                                                                                                                                                             ]
[+] EMBL AU063365             [         CATCGCGATCTCCATGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGCGCTCCTCGCCTCCTTCTCCTCCTCCGCCGNCGCCGCCGGCTCCGGCGT CTCGGGCCTCTTCGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCGGCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGATCGAGAGGTTCCTGATGGAGGAGGGCCCCGCGGCGG AGGA GGGGGTCGGCGCGGAGGA TTTCTTCGACGCGC TGCTCGTCGACGACGGGGAGGAGGAGGAGGAAGAAGAGGGGAAGGGGAG TGAGTCGAGGGGAAGCACGGATGGGGATTCCGGGAAGGAGAATGAGGTGGCTA CCCGGACGCGGAGAAGAAGGATNTGNA GC GAGGTGGATTGCGATTATCCCATTA CAAGAAGAAGAAGA GCAAATTAG AATAGGGATT TTCCATG AATCAAGGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU067892             [         CATCGCGATCTCCATGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGCGCTCCTCGCCTCCTTCTCCTCCTCCGCCGNCGCCGCCGGCTCCGG GTACTCGGGCCTCTTCGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGNAGTCGGTGAGNTCCCGGCGGCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGATCGAGAGGTTCCTGATGGAGGAGGGCCCCGCGGCGG AGGA GGGNGTCGNCGCGGAGAA TTTCTTCGACGCGC TGCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU069645             [          ATCGCGATCTCCATGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGCGCTCCTCGCCTCCTTCTCCTCCTCCGCCGCCGCCGCCGGCTCCGG GTNCTCGGGCCTCTTCGCCCCGTCACCGGCGCACGATGCGGAGGCGGGGTCGCCGNAGTCGGTGAGCTCCCGGCGGCCCAGCCCTTCCCGGGAGNCGGCGTTGTCGGAGATCGAGAGGTTCCTGATGNAGGAGGGCCNCGCGTCGGAAGGAGGGGGGTCGTCGCGGAGGATTTTCTTCGACGCGT TGTTCGTCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU069501             [                       TGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGCGCTCCTCGCCTCCTTCTCCTCCTCCGCCGNCGCCGCCGGCTCCGG GT CTNGGGCCTCTTCGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCGGCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGATCGANAGGTTCCTGATGGAGGAGGGCCCCGCGGCGG AGGA GNGGGTCGGCGCGGAGGA TTTCTTCGACGCGCTTGCTCGTCGACGGCGGGGAGGAGGAGGAGGAAGAAGAGGGGAAGGGGAG Tt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSC1247A             [                       TGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGCGCTCCTCGCCTCCTTCTCCTCCTCCGCCGCCGCCGCCGGCTCCGG GTACTCGGGCCTCTTCGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCGGCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGATCGANAGGTTCCTGATGGAGGAGGGCCCCGCGGCGG AGGA GGGGGTCGGCGCGGAGGA TTTCTTCGACGCGC TGCTCGTCGACGGCGGGGAGGAGGAGGAGGAAGAAGAGGGGAAGGGGAGTTAAGGCGGGGGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU068200             [                                                                                                       GGCGT CTCGGGCCTCTTCGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCGGCCCAGCCCTTCCCGGGAAGCGGCGCTGTCGGAGATCGAGAGGTTCCTGATGGAGGAGGGCCCCGCGGCGG ANGA GAGGGTCGGCGCGGAGGA TTTCTTCGACGCG  TGCTCGTCGACGGCGGGGAGGAGGAGGAGGAAGAAGANGGGAAGGGGAN TGAAGCGGGGGGAAGCACGGATGGGGATTCCGGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU078651             [                                                                                                       GGCGT CTCAGGCCTCTTCGCCCCGTCACCNCCGCACGATGCGGAAGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCGGCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGATCGAGAGGTTCCTGATGGAAGAAGGCCCCGCGGCGG AAGA AGGGGTCGGCGCGGAGGA TTTCTTCGACGCGtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF196975             [                                                                                                                                                                                                                                                                                                                                                                               GATTCCGGGAAGGAGAATGAGGTGGCTACCCCGGACGCGGAGAAGGAGGATGTGGAGGCGGAGGTGGATGGCGATGATCCCATGAGCAAGAAGAAGAGGAGGCAGATGAGAAATAGGGATTCTGCCATGAAATCGAGGGAGAGGAAGAAGATGTATGTTAAGGACCTAGAGACTAAGAGCAAGTATCTAGAGGCCGAGTGTCGTCGCCTCAGCTACGCGCTTCAGTGCTGCGCAGCTGAGAACATGGCGCTGCGCCAGAGCTTGTTGAAGGATAGGCCTGTCGGTGCCGCCACAGCCATGCAGGAGTCTGCCGTACTCACGGAAACCCTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAGCATCGTGTGCCTACT CCTGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGANGNNNAGCAGTGAACAACAGCTNNNNGNAACATTACTACTCCATGGGANNCGTTGCANNNGCTNNNGGGCnn                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB000843             [                                                                                                                                                                                                                                                                                                                                                                                                      GGCTACCCCGGACGCGGAGAAGGAGGATGTGGAGGCGGACGTGGATGGCGATGATCCCATGAGCAAGAAGAAGAGGAGGCAGATGAGAAATAGGGATTCTGCCATGAAATCGAGGGAGAGGAAGAAGATGTATGTTAAGGACCTAGAGACTAAGAGCAAGTATCTAGAGGCCGAGTGTCGTCGCCTCAGCTACGCGCTTCAGTGCTGCGCAGCTGAGAACATGGCGCTGCGCCAGAGCTTGTTGAAGGATAGGCCTGTCGGTGCCGCCACAGCCATGCAGGAGTCTGCCGTACTCACGGAAACCCTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAGCATCGTGTGCCTACT CCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCCGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB000608             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGGGAGAGGAAGAAGATGTATGTTAAGGACCTAGAGACTAAGAGCAAGTATCTAGAGGCCGAGTGTCGTCGCCTCAGCTACGCGCTTCAGTGCTGCGCAGCTGAGAACATGGCGCTGCGCCAGAGCTTGTTGAAGGATAGGCCTGTCGGTGCCGCCACAGCCATGCAGGAGTCTGCCGTACTCACGGAAACCCTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAGCATCGTGTGCCTACT CCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGT                                                                                                                                                                                             ]
[+] EMBL AU067893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCTGTCGGTNCCGCCACAGCCATGAAGGANTCTGCCGTACTCACGGAAACCGTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAGCATCGTGTGCCTAATCCCCGGTGCCCGGTNTACCCAACCGAAACCCGGTGGCTCGAAGCAGCNCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCNNGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAAaaaaaaaa                                                                                                                                                                           ]
[+] EMBL CF332426             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGCCGTACTCACGGAAACCCTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAGCATCGTGTGCCTACT CCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGCGACTGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTTTATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAATCTGGCTTTGTTGAAAAAA                                                                                                                                                                ]
[-] EMBL CF332425             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTTTGGCTCGTGAGCATCGTGTGCCTACT CCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTTGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTTTATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGGTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAATTTGGCTTTGTTGAAAAAAa                                                                                                                                                               ]
[-] EMBL BI306553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCATTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAATCTGGTTTTGTTGAGTTGTTTGCTGGCTTCTCATCATGTCGGAAGATTTACAGTTGCTCCTATACTCCTACTTGCCAGGCTCT CT GGAAGTGTATGGCAGTAAAAAACAGGTATATTGTTCCTCAGCAGTATTTGCCTTGATGTGAGTAAATGAAA                     ]
[-] EMBL BI305443             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTCTACCCAACCGAAACCCGGTGGCTAGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACATCAGCTAGAAGAAACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCTAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCATTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAATCTGGTTTTGTTGAGTTGTTTGCTGGCTTCTCATCATGTCGGAATATTTACAGTTGCTCCTATACTCCTACTTGCCAGGCTCTCCTGGGAAGTGTATGGCAGTAAAAAACAGGTATATTGTTCCTCAGCAGTATTTGCCTTGATGTGAGTAAATGAAACAAATAGACAAAAAAAACAAA]
[+] EMBL AU078652             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGAACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCNAAGTTTTTATAATATCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAAaa                                                                                                                                                                                 ]


>consensus_14857#0 AAATATCTCCATCGCGATCTCCATGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGC GCTCCTCGCCTCCTTCTCCTCCTCCGCCGCCGCCGCCGGCTCCGGCGTCTCGGGCCTCTT CGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCG GCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGATCGAGAGGTTCCTGATGGAGGAGGG CCCCGCGGCGGAGGAGGGGGTCGGCGCGGAGGATTTCTTCGACGCGCTGCTCGTCGACGG CGGGGAGGAGGAGGAGGAAGAAGAGGGGAAGGGGAGTGAGGCGGGGGGAAGCACGGATGG GGATTCCGGGAAGGAGAATGAGGTGGCTACCCCGGACGCGGAGAAGGAGGATGTGGAGGC GGAGGTGGATGGCGATGATCCCATGAGCAAGAAGAAGAGGAGGCAGATGAGAAATAGGGA TTCTGCCATGAAATCGAGGGAGAGGAAGAAGATGTATGTTAAGGACCTAGAGACTAAGAG CAAGTATCTAGAGGCCGAGTGTCGTCGCCTCAGCTACGCGCTTCAGTGCTGCGCAGCTGA GAACATGGCGCTGCGCCAGAGCTTGTTGAAGGATAGGCCTGTCGGTGCCGCCACAGCCAT GCAGGAGTCTGCCGTACTCACGGAAACCCTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAG CATCGTGTGCCTACTCCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAG CGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGA AGAAACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGA TACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTG TTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGC CGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATA TCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAATCTGGCTTTGTTGAAAAAATT GCTGGCTTCTCATCATGTCGGAAGATTTACAGTTGCTCCTATACTCCTACTTGCCAGGCT CTCTGGAAGTGTATGGCAGTAAAAAACAGGTATATTGTTCCTCAGCAGTATTTGCCTTGA TGTGAGTAAATGAAACAAATAGACAAAAAAAACAAA



consensusID : consensus_14857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence
                              [ACCTGACTGGACTGACTGAGTAGAAACCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAGACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCA]

[+] EMBL CF331912             [ACCTGACTGGACTGACTGAGTAGAAACCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAGACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATATCCTCCTATGCATAATGCATTATCCA]


>consensus_14857#1 ACCTGACTGGACTGACTGAGTAGAAACCCGGTGCCCGGTCTACCCAACCGAAACCCGGTG GCTCGAAGCAGCGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAA CAACAGCTAGAAGAGACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGG ATCAAGCTAGATACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCC TTGCAAAGTTGTTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCC TGTCGTGCTGCCGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTG TTTTTATAATATCCTCCTATGCATAATGCATTATCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14857#0      AAATATCTCCATCGCGATCTCCATGGATGTAGAGTTCTTCGCCGACCTCGACCTCGACGC 60
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      GCTCCTCGCCTCCTTCTCCTCCTCCGCCGCCGCCGCCGGCTCCGGCGTCTCGGGCCTCTT 120
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      CGCCCCGTCACCGCCGCACGATGCGGAGGCGGGGTCGCCGGAGTCGGTGAGCTCCCGGCG 180
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      GCCCAGCCCTTCCCGGGAGGCGGCGCTGTCGGAGATCGAGAGGTTCCTGATGGAGGAGGG 240
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      CCCCGCGGCGGAGGAGGGGGTCGGCGCGGAGGATTTCTTCGACGCGCTGCTCGTCGACGG 300
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      CGGGGAGGAGGAGGAGGAAGAAGAGGGGAAGGGGAGTGAGGCGGGGGGAAGCACGGATGG 360
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      GGATTCCGGGAAGGAGAATGAGGTGGCTACCCCGGACGCGGAGAAGGAGGATGTGGAGGC 420
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      GGAGGTGGATGGCGATGATCCCATGAGCAAGAAGAAGAGGAGGCAGATGAGAAATAGGGA 480
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      TTCTGCCATGAAATCGAGGGAGAGGAAGAAGATGTATGTTAAGGACCTAGAGACTAAGAG 540
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      CAAGTATCTAGAGGCCGAGTGTCGTCGCCTCAGCTACGCGCTTCAGTGCTGCGCAGCTGA 600
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      GAACATGGCGCTGCGCCAGAGCTTGTTGAAGGATAGGCCTGTCGGTGCCGCCACAGCCAT 660
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      GCAGGAGTCTGCCGTACTCACGGAAACCCTGCCGCTGGTTTCCCTGCTTTGGCTCGTGAG 720
consensus_14857#1      ----------------------------------------------ACCTGACT---GGA 11
                                                                        ** **   *  

consensus_14857#0      CATCGTGTGCCTACTCCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAG 780
consensus_14857#1      CTGACTGAGTAGAAACCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAG 71
                       *    ** *   *  *********************************************

consensus_14857#0      CGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGA 840
consensus_14857#1      CGCCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGA 131
                       ************************************************************

consensus_14857#0      AGAAACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGA 900
consensus_14857#1      AGAGACATTACTACTCCATGGGAGGCGTTGCAAGGGCTCGAGGGCGAGGATCAAGCTAGA 191
                       *** ********************************************************

consensus_14857#0      TACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTG 960
consensus_14857#1      TACCGGACCGTTCCGTTTAGCAGCAGCTGCTTGCTAGGCTGCCGCTTCCTTGCAAAGTTG 251
                       ************************************************************

consensus_14857#0      TTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGC 1020
consensus_14857#1      TTTCCAGTCTGTATTGTAGCTAGCAAATCAAATTGGCGTGTCTATCGCCTGTCGTGCTGC 311
                       ************************************************************

consensus_14857#0      CGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATA 1080
consensus_14857#1      CGCTTATCCATGGACTATCTTTTTCTTTTTTTGGTTCCTTCCCCCCTTGTTTTTATAATA 371
                       ************************************************************

consensus_14857#0      TCCTCCTATGCATAATGCATTATCCAGGTAGTTTTGAAATCTGGCTTTGTTGAAAAAATT 1140
consensus_14857#1      TCCTCCTATGCATAATGCATTATCCA---------------------------------- 397
                       **************************                                  

consensus_14857#0      GCTGGCTTCTCATCATGTCGGAAGATTTACAGTTGCTCCTATACTCCTACTTGCCAGGCT 1200
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      CTCTGGAAGTGTATGGCAGTAAAAAACAGGTATATTGTTCCTCAGCAGTATTTGCCTTGA 1260
consensus_14857#1      ------------------------------------------------------------
                                                                                   

consensus_14857#0      TGTGAGTAAATGAAACAAATAGACAAAAAAAACAAA 1296
consensus_14857#1      ------------------------------------
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)