These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1369 fasta sequence [CCGCTNCGCTGCGACGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAGCG-GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC-TCAGTATCTGTCCAATCCT-CAGTACTACT-TTCAAGTCAACAGTCAGTATG-TGAGAAACAA-GTTGAAGGTGATC-TTGTT-CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGG-AGGAAGGTTGTCATACAAACCTCCAATT-CAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAA-GTAATCCTGATCAGAGTTCTACTGTACACGCT-GGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCT-ATG-CTGGGTATGGA-TTTGCTGGTACATCACTTGCAATG-CTTGTCCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGTTCTCAATCTGCACCGGAGTTTTCCTTGTCAAGACGATGAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGATTCTTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTTACAAACTCCGTCTGAAATTTTCCTACTTACAAGTCAATACATAATCTATAATTAGCAAAAA] [+] EMBL AU032156 [CCGCTNCGCTGCGACGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAGCGAGCGCCGCGACGTCGACNNTGCGCCGCCGCAGTTAGCATGGCANCGATGAACAATGATCTNGNAGGACTGGGAGGCAGACCTGCTANTTCANAAGCTAATNCNNTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGCCGAGAAGTTTTTAGGNTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACTCAGNAAGTCAACAGTCAGTATG TGAGANACAAGGTTGAAGGTGATC TTGTTNCCCTTTCCTGCACCGNGGGC ] [+] EMBL AK059836 [ ctCTTCGCTGCGACGCGCTGCCTCC CTACTGCTGCCGCCGACGAATCCCAGCG GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATC TTGTT CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGG AGGAAGGTTGTCATACAAACCTCCAATT CAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAA GTAATCCTGATCAGAGTTCTACTGTACACGCT GGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCT ATG CTGGGTATGGA TTTGCTGGTACATCACTTGCAATG CTTGTCCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGTTCTCAATCTGCACCGGAGTTTTCCTTGTCAAGACGATGAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTC ] [+] EMBL AK071563 [ CGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAGCG GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATC T TT CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGG AGGAAGGTTGTCATACAAACCTCCAATT CAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAA GTAATCCTGATCAGAGTTCTACTGTACACGCT GGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCT ATG CTGGGTATGGA TTTGCTGGTACATCACTTGCAATG CTTGTCCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGTTCTCAATCTGCACCGGAGTTTTCCTTGTCAAGACGATGAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTATGAGAGACACCCCAGCCGGAATCACTACTTCCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGATTCTTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTTACAAACTCCGTCTGAAATTTTCCTACTTACAAGTCAATACATAATCT ] [+] EMBL AU058369 [ TCCCTCTACTGCTGCCGCCGACGAATCCCAGCG GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCTCCAGTACTACT TTCAAGTCNACAGTCAGTATGTTGAGAAAC A GTTGAAGGTGATC TTG T NCCTTTCCTG ] [+] EMBL C74533 [ CCCTCTACTGCTGCCGCCGACGAATCCCAGCG GCGCCGCGACGCCGNCGGTGCGCCGCCGC AGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACNNCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATCNTGGTT CCCT ] [+] EMBL OSR26501A [ GCG GCGCCGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTG ] [+] EMBL AU030204 [ CGCGACGCCGNCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCAC TCAGTATCTGTCCAATCCT CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATC TTGTT CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGGAAGGAAGGTTGTCATACAAACCTCCNATTCCAAGATATCNATGCTCCAGATCTTTACATTCCNCTGATGGC ] [+] EMBL C72784 [ CAGTACTACT TTCAAGTCAACAGTCAGTATG TGAGAAACAA GTTGAAGGTGATC TTGTT CCCTTTCCTGCACCGGGGGCACTGGACAAGGATAACTGAACCGGTGGG AGGAAGGTTGTCATACAAACNTCCAATT CAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTGTAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAANGNAGGCCTGATCAGAGTTCTACTGTACACGCTGGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTAATGCCNGGGTATGGATTTTCCTGG NCATCACTTGCAANGCCTTGTC ] [+] EMBL AU094072 [ nCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCTCATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTCTGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGATTCTTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTTACAAACTCCGTCTGAAATTTTCCTACTTACAAGTCAATACATAATCTATAATTAGCAAAAA] consensusID : consensus_14859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 629 fasta sequence [GGCCGGACGCGTGCNNTGTTCTTGGGAGGTTTACCCCAGAGNCACTCACTNTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTCTACTGTACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGTATGGATTTGCTGGTACATCACTTGCAATGCTTGT-CCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCAT-GGTTCTCAATCTGCA-CCGG-AGTTT-TCC-TTG-TCAAGACGA-TG-AAGA-GGGTT--CT-TCTGGG-CGCACCAAGGA-GCTA-TGAGAGACACCCCA-G-CCGGAATCACTACTTTCTTCTTTT-CCT-CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT-CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAAANNNAA] [+] EMBL AU056670 [GGCCGGACGCGTGCNNTGTTCTTGGGAGGTTTACCCCAGAGNCACTCACTNTACAGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTCTACTGTACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGTATGGATTTGCTGGTACATCACTTGCAATGCTTGT CCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCAT GGTTCTCAATCTGCA CCGG AGTTT TCC TTG TCAAGACGA TG AAGA GGGTT CT TCTGGG CGCACCAAGGA GCTA TGAGAGACACCCCA G CCGGAATCACTACTTTCTTCTTTT CCT CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAAA ] [+] EMBL AU032157 [ gnTATGGATTTGCTGGTACANCATTTGCAATGCTTGT CCGCNTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCAT GGTTCTCAATCTGCA CCGG AGTTT TCC TTG TCAAGACGA TG AAGA GGGTT CT TCTGGG CGCACCAAGGA GCTA TGAGAGACACCCCA G CCGGAATCACTACTTTCTTCTTTT CCT CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTGCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATNCNCGAATGTTCTTNTNGTNNAAAAAAAAANNNAA] [+] EMBL AU031913 [ GCAATGCTTGTCCCGCGTCTTCTGGAGCCCGTCATATTATTTTGTACTGCCATGGGTTCTCAATCTGCA CCGG AGTTT TCC TTG TCAAGACGA TG AAGA GGGTT CT TCTGGG CGCACCAAGGA GCTA TGAGAGACACCCCA G CCGGAATCACTACTTTCTTCTTTT CCT CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAAAa ] [+] EMBL AU095481 [ cnTCAATCTGCANCCGGAAGTTTCTCCTTTGTTCAAGACGATTGAAAGACGGGTTTCCTNACTGGGCCGCACCAAGGANGCTATTGAGAGACACCCCATGTCCGGAATCACTACTTTCCTCTTTTNCCTNCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAA ] [+] EMBL AU068383 [ AAGA GGGTT CT TCTGGG CGCACCAAGGA GCTA TGAGAGACACCCCA G CCGGAATCACTACTTTCTTCTTTT CCT CGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCGTAAA AAAAA ] [+] EMBL AU095026 [ TATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATT CTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGCATACCAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGAAGACCAATGGATACACGAATGTTCTTATCaaaaa ] consensusID : consensus_14859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [NCCCCNNNCCNCNCNCNCNCCCCCNCNCCNNCCCCNCCCNCCTCNCCNNCCCGAATCCCAGCGGGCGCCGCGACGCGCGGTGCGCCGCCGCAGNTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTCAAGTCAACAGTCAGTATGTGAGAAACAAGTTGAAGGTGATCTTGTTCCCTTTCCTGCACCGGGGGCACTGGCCAAGGNTAACTG] [+] EMBL OSR25491A [NCCCCNNNCCNCNCNCNCNCCCCCNCNCCNNCCCCNCCCNCCTCNCCNNCCCGAATCCCAGCGGGCGCCGCGACGCGCGGTGCGCCGCCGCAGNTTAGCATGGCAGCGATGAACAATGATCTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTCAAGTCAACAGTCAGTATGTGAGAAACAAGTTGAAGGTGATCTTGTTCCCTTTCCTGCACCGGGGGCACTGGCCAAGGNTAACTG] consensusID : consensus_14859#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [CTTTNTCCCGCGTCTTNTGGAGCCCCTTCANATTATTTTGTTNCTGCCCATGGTTCTCAATCTGCCACCGGAGTTTTCCTTGTCAAGACGNTGAAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTNTGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGNATNCCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030205 [CTTTNTCCCGCGTCTTNTGGAGCCCCTTCANATTATTTTGTTNCTGCCCATGGTTCTCAATCTGCCACCGGAGTTTTCCTTGTCAAGACGNTGAAAGAGGGTTCTTCTGGGCGCACCAAGGAGCTNTGAGAGACACCCCAGCCGGAATCACTACTTTCTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACATCAGCGGGTGATATTTCAGCCTTATTTTAGAACTACATAACTCGATTTATTCGGTATTACTGGAATAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGGACAAGAAGTTGNATNCCAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14859#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [ACGAATCCCAGCGGCGCCGCGACGNCGCCGGTGCGCCGCCNCAGTTCGTTTTTNTTTATGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGNCTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTNCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTCAAAGTCAACAGTCAGTATGTNAGAAAACAAGTTGAAGGTGATCTTGTTCCCTTTTCCTGCACCGGGGGCA] [+] EMBL AU108675 [ACGAATCCCAGCGGCGCCGCGACGNCGCCGGTGCGCCGCCNCAGTTCGTTTTTNTTTATGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAGGNCTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTNCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTCAAAGTCAACAGTCAGTATGTNAGAAAACAAGTTGAAGGTGATCTTGTTCCCTTTTCCTGCACCGGGGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 CCGCTNCGCTGCGACGCGCTGCCTCCCTCTACTGCTGCCGCCGACGAATCCCAGCGGCGC 60 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 CGCGACGCCGCCGGTGCGCCGCCGCAGTTAGCATGGCAGCGATGAACAATGATCTGGGAG 120 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 GACTGGGAGGCAGACCTGCTACTTCACAAGCTAATCCTTTTGAAAGTGCTTTATATGGAG 180 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 CTGGACCTGGACTCATCCGAAGTGGGTTAGGAGCATACGGCGAGAAGTTTTTAGGTTCAA 240 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 GCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAATCCTCAGTACTACTTTC 300 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 AAGTCAACAGTCAGTATGTGAGAAACAAGTTGAAGGTGATCTTGTTCCCTTTCCTGCACC 360 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 GGGGGCACTGGACAAGGATAACTGAACCGGTGGGAGGAAGGTTGTCATACAAACCTCCAA 420 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 TTCAAGATATCAATGCTCCAGATCTTTACATTCCTCTGATGGCTTTTGGGACGTATGTTG 480 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------GGCCGGACGCGTGCNNTGTTCTTGGGAGGTTTACCCCAGAGNCACTCACTNTAC 54 consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 TAATTGCTGGATATGCTTTGGGTGTTCTTGGGAGGTTTACCCCAGAGGCACTCACTCTAC 540 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 AGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTCTACTGT 114 consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 AGTTCACAAAAGGATTACTTGGCTGGTTTCTGCAAGTAATCCTGATCAGAGTTCTACTGT 600 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGTATGGAT 174 consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 ACACGCTGGGAAGTGGTGAAGCGCCATTGCTGGACATTGTGGCCTATGCTGGGTATGGAT 660 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 TTGCTGGTACATCACTTGCAATGCTTGTCCGCGTCTTCTGGAGCCCGT-CATATTATTTT 233 consensus_14859#3 ---------------------CTTTNTCCCGCGTCTTNTGGAGCCCCTTCANATTATTTT 39 consensus_14859#0 TTGCTGGTACATCACTTGCAATGCTTGTCCGCGTCTTCTGGAGCCCGT-CATATTATTTT 719 consensus_14859#2 NCCCCNNNCCNCNCNCNCNCCCCCNCNCCNNCCCCNCCCNCCTCNCCNNCCCGAATCCCA 60 consensus_14859#4 --------------------------ACGAATCCCAGCGGCGCCGCGACGNCG----CCG 30 * * * consensus_14859#1 GT--ACTGCC-ATGGTTCTCAATCTGC-ACCGGAGTTTTCCTTGTCAAGACGATGAA-GA 288 consensus_14859#3 GTT-NCTGCCCATGGTTCTCAATCTGCCACCGGAGTTTTCCTTGTCAAGACGNTGAAAGA 98 consensus_14859#0 GT--ACTGCC-ATGGTTCTCAATCTGC-ACCGGAGTTTTCCTTGTCAAGACGATGAA-GA 774 consensus_14859#2 GCGGGC-GCC-GCGACGCGCGGTGCGCCGCCGCAGNTTAGCATGGCAG--CGATGAACAA 116 consensus_14859#4 GTGCGCCGCC-NCAGTTCGTTTT-TNTTTATGCAGTT-AGCATGGCAG--CGATGAACAA 85 * * *** * * * ** * * ** ** ** **** * consensus_14859#1 GGGTTCTTCTGGGCGCACCAAGGAGCT-ATGAGAGACACCCCAGCCGGAATCACTACTTT 347 consensus_14859#3 GGGTTCTTCTGGGCGCACCAAGGAGCT-NTGAGAGACACCCCAGCCGGAATCACTACTTT 157 consensus_14859#0 GGGTTCTTCTGGGCGCACCAAGGAGCT-ATGAGAGACACCCCAGCCGGAATCACTACTTT 833 consensus_14859#2 TGAT----CTGGGAGGACTGGGAGGCAGACCTGCTACTTCACAAGCT-AATCCTTTTGAA 171 consensus_14859#4 TGAT----CTGGGAGGNCTGGGAGGCAGACCTGCTACTTCACAAGCT-AATCCTTTTGAA 140 * * ***** * * * ** * ** * ** * **** * consensus_14859#1 CTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACAT-CAGCGG 406 consensus_14859#3 CTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACAT-CAGCGG 216 consensus_14859#0 CTTCTTTTCCTCGCGGTTGTGCAATTTCCCATGCTCTTCTGGCTAGGCAACAT-CAGCGG 892 consensus_14859#2 AGTGCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGG-AGCATACGGCGA 230 consensus_14859#4 AGTNCTTTATATGGAGCTGGACCTGGACTCATCCGAAGTGGGTTAGG-AGCATACGGCGA 199 * *** * * ** * * *** * ** **** * *** * *** consensus_14859#1 GTGATATTTCAGCCTTATTTTAGAACT-ACATAACTCGAT-TTATTCGGTATTACTGGAA 464 consensus_14859#3 GTGATATTTCAGCCTTATTTTAGAACT-ACATAACTCGAT-TTATTCGGTATTACTGGAA 274 consensus_14859#0 GTGATATTTCAGCCTTATTTTAGAACT-ACATAACTCGAT-TTATTCGGTATTACTGGAA 950 consensus_14859#2 GAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAA 290 consensus_14859#4 GAAGTTTTTAGGTTCAAGCTCTGAGTTTATGCAAAGCAATATCACTCAGTATCTGTCCAA 259 * * *** * * * ** * * ** * ** * * ** **** * ** consensus_14859#1 TAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGG 524 consensus_14859#3 TAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGG 334 consensus_14859#0 TAGGTTTGAGATTTAGGCATATATGTCGTTCATATTCTTGTGGAAGTGGTAAATTGCTGG 1010 consensus_14859#2 T---CCTCAGTACTACTTTCA-A-GTCAACAGTCAGTATGTGAGAA-A-CAAGTTGAAGG 343 consensus_14859#4 T---CCTCAGTACTACTTTCA-AAGTCAACAGTCAGTATGTNAGAA-AACAAGTTGAAGG 314 * * ** ** * * *** * *** * ** *** ** consensus_14859#1 ACAAGAAGTTGCATAC--CAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGA 582 consensus_14859#3 ACAAGAAGTTGNATNC--CAAAAAAAAAAAAAAAAAAAAAAA------------------ 374 consensus_14859#0 ACAAGAAGTTGCATAC--CAAATGTCTGTCCTTCGCCCTTGTCTGTCCGGCATTAACTGA 1068 consensus_14859#2 TGATCTTGTTCCCTTT-CCTGCACCGGGGGCACTGGCCAAGGNTAACTG----------- 391 consensus_14859#4 TGATCTTGTTCCCTTTTCCTGCACCGGGGGCA---------------------------- 346 * *** * * consensus_14859#1 AGACCAATGGATACACGAATGTTCTTATCGTACATCAAAAAANNNAA------------- 629 consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 AGACCAATGGATACACGAATGTTCTTATCGTACATCATCGCTATTTTGCCTTCTGTATCT 1128 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 CATTTTTGTTACTTAGTCACCGCGATCGCCTTCAAGCTGTCTTACGACCTGAGACATGTC 1188 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 TGTATAAAATCAGATGATAATGTTCCTTGTCGTGCACTTCAATTGCTTCTGAAATGTGAT 1248 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 TCTTCAGTGGACTGGGGATATGGGAGTACATAGGACCAAGAGAGTGTTGTGTAATTCCTT 1308 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 ------------------------------------------------------------ consensus_14859#3 ------------------------------------------------------------ consensus_14859#0 ACAAACTCCGTCTGAAATTTTCCTACTTACAAGTCAATACATAATCTATAATTAGCAAAA 1368 consensus_14859#2 ------------------------------------------------------------ consensus_14859#4 ------------------------------------------------------------ consensus_14859#1 - consensus_14859#3 - consensus_14859#0 A 1369 consensus_14859#2 - consensus_14859#4 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||