These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1220 fasta sequence [GAAGTTGGGGGTTGGGGGGTTGGGCGAGGAGGAGGAAGAGGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT-GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG-AG-TGAAATTCGTGTCCGTGCCA-GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG-AAGTACATCGTG-CCCTACTTG-AAGGGAAAGGACA-AT-GGAAAGGCTTGGATTGCTGCGA-CTTGGCGTGCCATCACCAACA-CCATCG-GTGGGGAAGCGTTTGTGCTCAA-CTAGCTA-CTAGTA-CTAGTATCA-TGTTGCA-GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG-CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTAAAAAAAAAA] [+] EMBL AK120839 [GAAGTTGGGGGTTGGGGGGTTGGGCGAGGAGGAGGAAGAGGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACA AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTT ] [+] EMBL CF298723 [ GGGGGTTGGGCGAGGAGGAGGAAGAGGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCCCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGgtccgc ] [-] EMBL CB624275 [ GTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACA AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGCCAAAAaaaaggaa ] [-] EMBL CB657907 [ ATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACA AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTGTATATGAAGACAAAATTGA ] [+] EMBL AU030664 [ TTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGAT GACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTGCCCCTACTTG AAGGGAAAGGACA ATGGGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTAAAAAA ] [+] EMBL BM039035 [ TACCACCTTAGAGAATTTGGTATAAATCATGTTTCAGGATGGACGCTGTCTTGATACCTCGGGAAACAGCAT GTTTGGTTACTATCCAGATGGA GTTTCGATCCTGTCCTGCCCCCTCAGAAGAC AAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACC AT GGAAAGGCTTGGATTGCTGCGACCTTGGCGTGCCATCACCAACACCCATCG GTGGGGAAGCGTTTGTGCTCAACCTAGCTACCTAGTACCTAGTATCACTGTTGCACGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACC AACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACCAAATTGAGCTGATCTTAAAAAAAAAA] [+] EMBL BM420348 [ CTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAA CTGTACATGGAGGACTGGATT GTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCACGGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCTTG CCCTACTTG AAGGGAAAGGAC AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACC ACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TNTTGCA GCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACC AACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGAC AAATTGAGCTGATCTTAAAAAA ] [+] EMBL BQ908484 [ CCAGATGGA GTTTCGATCCTGTCCTGCCCCCTCAGAAGACCAA CTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAGTAGCTGAAATTCGTGTCCGTGCCACGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGTAAGTACATCGTG CCCTACTTGTAAGGGAAAGGACACAT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCTACA CCATCGTGTGGGGAAGCGTTTGTGCTCAA CTAGCTA CTAGTA CTAGTATCA TGTTCAA CCCTCTTTCTTGGCTCTGATGATGATNGTAAAAAGATACAGGTGTACAGTGCCAGGATACGC TTTCATTCCCTG GCAAGTATA GTATTCCTCATCA GTATACATTCACC AACTAGGAGTTCAAGTAACAAGTACTCCTATATANGAAGAC AAATTGAGCTGATCTTAAAA ] [-] EMBL CF298724 [ CAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAG AG TGAAATTCGTGTCCGTGCCA GGGGGGCACCTGGGTATTTCCAAGACTGACATGATG AAGTACATCGTG CCCTACTTG AAGGGAAAGGACA AT GGAAAGGCTTGGATTGCTGCGA CTTGGCGTGCCATCACCAACA CCATCG GTGGGGAAGCGTTTGTGCTCAA CTAGATA CTAGTA CTAGTATCA TGTTGCA GCCTCTTTCTTGGCTATGAAG TAATTGTAAAAAGATACAGGTGTACAGTG CAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTA ] consensusID : consensus_14861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 915 fasta sequence [GGGGTTGGGGGGNTGGGCGAGNAGGAGGAANANGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTG-ATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACA] [+] EMBL AU162311 [GGGGTTGGGGGGNTGGGCGAGNAGGAGGAANANGAGTACAAGAAAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTGAATTGGTCGAGCAGTTGTTGAGTTTTGTGAT ] [+] EMBL CB624274 [ AAGAAAGAAAGATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTG ATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACA ] [+] EMBL CB657906 [ TCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTG ATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTAGATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATCATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACA] [+] EMBL CA753267 [ GAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAATATAGTTGGTCTTTCACAGGGGAACCTG ATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTGATATTTCAGATTATTTAAAGGGTTGTACATTTCTTCCAAAGCTTAACAATGAGTTACCAGGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTA TAATCATGTTTCAGG ] consensusID : consensus_14861#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [AGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTGTACTACTACACTACACTACATCTCTCTTTCTTTCTTTTTCAGTTTCCTTCCCTTCTCAATTAGATTAATTAATTAATTAATTAATTACTTGTGCTACTGCCTGCTAATGATGGAAAACGCATAGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGTCCACTACTTGACTTCTTCAATCTAGCTAGCCTAGGAATCTTGTTTACCTACTAGTACCAGTAATAAAAACAACTCTTTCTATATTCTTTCCACATAGTACTAATTTCTCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTGTAAGTTCATCTCATTGTTTCCAAGTGATACCTAGTTTGTGATGAAAAGTTAAAATTTAATAATCCAAGATTGTGCATGGATCTTCTCAGATGACAC] [+] EMBL CB640012 [AGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTCGTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTGTACTACTACACTACACTACATCTCTCTTTCTTTCTTTTTCAGTTTCCTTCCCTTCTCAATTAGATTAATTAATTAATTAATTAATTACTTGTGCTACTGCCTGCTAATGATGGAAAACGCATAGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAACAGGTCCACTACTTGACTTCTTCAATCTAGCTAGCCTAGGAATCTTGTTTACCTACTAGTACCAGTAATAAAAACAACTCTTTCTATATTCTTTCCACATAGTACTAATTTCTCCCTCATGCTGGTACTGCTTCAGTGCCACTTTGTGGTGTAAGTTCATCTCATTGTTTCCAAGTGATACCTAGTTTGTGATGAAAAGTTAAAATTTAATAATCCAAGATTGTGCATGGATCTTCTCAGATGACAC] consensusID : consensus_14861#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [AGGCAGAGACAAGGGGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACNCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGAAGTACATCGTGCCCTACTTGAAGGGAAAGGCCAATGGAAAGGCTTGGATTGCTGCGACTTGGCGTGCCATCACCAACACCATCGGTGGGGAAGCGTTTGTGCTCAACTAGCTCCTAGTACTAGTATCATGTTGCAGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGTTCTTAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762318 [AGGCAGAGACAAGGGGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACNCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGAAGTACATCGTGCCCTACTTGAAGGGAAAGGCCAATGGAAAGGCTTGGATTGCTGCGACTTGGCGTGCCATCACCAACACCATCGGTGGGGAAGCGTTTGTGCTCAACTAGCTCCTAGTACTAGTATCATGTTGCAGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGTTCTTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14861#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 391 fasta sequence [TTTTTTTTTTTTTACAGTGCAGGATACGCGTTTCATT-CCCTGTGC-AAGTATATGTATT-CCTCATCATGTATACATTCA-CCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTACATGATGGTATCACAAATGATTCGGAGAAGTAGTAACAAATTTATTTGTGGGTTTGCGGCCACCCTGGGACTTCCAGGCAGTGATGGCGGTGAGCAGAGAGCGGTTGGGCACAAGTGTCTTGTTTGGCATCCGAACATTGGTGACCGGAGACACATCCTTGTCGCACACCCACATCTCAATGGCGTGGCGCTCGTACGAGTAGCCGTCCGACGCGATGCACGGCTCTTGCATAACCCTCTTGAGTATGGGG] [-] EMBL AU092985 [TTTTTTTTTTTTTACAGTGCAGGATACGCGTTTCATT CCCTGTGC AAGTATATGTATT CCTCATCATGTATACATTCA CCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTACATGATGGTATCACAAATGATTCGGAGAAGTAGTAACAAATTTATTTGTGGGTTTGCGGCCACCCTGGGACTTCCAGGCAGTGATGGCGGTGAGCAGAGAGCGGTTGGGCACAAGTGTCTTGTTTGGCATCCGAACATTGGTGACCGGAGACACATCCTTGTCGCACACCCACATCTCAATGGCGTGGCGCTCGTACGAGTAGCCGTCCGACGCGATGCACGGCTCTTGCATAACCCTCTTGAGTATGGG ] [-] EMBL C28485 [ CAGTGCAGGATACGCGTTTCATTCCCCTGTGCAAAGTATATGTATTCCCTCATCATGTATACATTCACCCAAACTAGNAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAGCTGATCTTACATGATGGTATCACAAATGATTCGGAGAAGTAGTAACAAATTTATTTGTGGGTTTGCGGCCACCCTGGGACTTCCAGGCAGTGATGGCGGTGAGCAGAGAGCGGTTGGGCACAAGTGTCTTGTTTGGCATCCGAACATTGGTGACCGGAGACACATCCTTGTCGCACACCCACATCTCAATGGCGTGGCGCTCGTACGAGTAGCCGTCCGACGCGATGCACGGCTCTTGCATAACCCTCTTGAGTATGGGG] consensusID : consensus_14861#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [GATTCGGCACGATTATAATCGCAGATGTTACATANAGATGATGGGCCGGAAAGCGTNNGTGCTCAACTAGCTACTANTACTAGTATCATGNTGCAGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAG] [+] EMBL AA751838 [GATTCGGCACGATTATAATCGCAGATGTTACATANAGATGATGGGCCGGAAAGCGTNNGTGCTCAACTAGCTACTANTACTAGTATCATGNTGCAGCCTCTTTCTTGGCTCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAAGTACTCCTATATATGAAGACAAAATTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14861#0 GAAGTTGGGGGTTGGGGGGTTGGGCGAGGAGGAGGAAGAGGAGTACAAGAAAGAAAGAAA 60 consensus_14861#1 -------GGGGTTGGGGGGNTGGGCGAGNAGGAGGAANANGAGTACAAGAAAGAAAGAAA 53 consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 GATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTC 120 consensus_14861#1 GATTAGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTC 113 consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ----AGTAGTAGATGGCCGCTTATTCCCTCGTCTTCGTCTTCGTCGGCGTCGCCGTCTTC 56 consensus_14861#0 GTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAG 180 consensus_14861#1 GTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAG 173 consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 GTCCTCGCGCCACCAGCCTCCGCCGTGCCCTTCATCGTCCTGCACGGGATCGGAGACCAG 116 consensus_14861#0 TGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTG------------- 227 consensus_14861#1 TGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCAT 233 consensus_14861#3 -----------AGGCAGAGACAAGGGGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAA 49 consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 TGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCAT 176 consensus_14861#0 -----------TGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAA 276 consensus_14861#1 GGCTACTGCCTTGAAATCGGAAGTGGAACATGGGACTCTTGGTTAATGCCTCTTCAGAAA 293 consensus_14861#3 AGCTG-TACATGGAGGACTGGATTGGTCTCAAGACNCTGGATGATGAGGGGAGAGTGAAA 108 consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ----------------------------------TTTTTTTTTTTTTACAGTGCAGGATA 26 consensus_14861#2 GGCTACTGCCTGTACTACTACACTACACTACATCTCTCTTTCTTTCTTTTTCA------- 229 consensus_14861#0 CAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAAT 336 consensus_14861#1 CAGGCTGATATTGTTTGCAGTAAGGTAAAAGAAATGAAGGAACTCTCCAATGGTTACAAT 353 consensus_14861#3 TTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGAAGTACATC 168 consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 CGCGT-TTCATTCCCTGTGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACT 85 consensus_14861#2 ---GTTTCCTTCCCTTCTCAATTAGATTAATTAATTAATTAATTAATTACTTGTGCTACT 286 consensus_14861#0 AT-AGTTGGTCTTTCACAGGGGAACCTGAT-TGGTCGAGCAGTTGTTGAGTTTTGTGATG 394 consensus_14861#1 AT-AGTTGGTCTTTCACAGGGGAACCTGAT-TGGTCGAGCAGTTGTTGAGTTTTGTGATG 411 consensus_14861#3 GTGCCCTACTTGAAGGGAAAGGCCAATGGA-AAGGCTTGG-ATTGCTGCGACTTGGCGTG 226 consensus_14861#5 ---------------------------------GATTCGGCACGATTATAATCGCAGATG 27 consensus_14861#4 AGGAGTTCAAGTAACAAGTACTCCTATATA-TGAAGACAAAATTGAGCTGATCTTACATG 144 consensus_14861#2 GCCTGCTAATGATGGAAAACGCATAGTGAAATCGGAAGTGGAACATGGGACTCTTGGTTA 346 * consensus_14861#0 ATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAG 454 consensus_14861#1 ATGGGCCACCGGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAG 471 consensus_14861#3 CCATCACCAACACCATCGGTGGGGAAGCG-TTTGTGCTCAACTAGCTCCTA--GTACTAG 283 consensus_14861#5 TTA-CATANAGATGATGGGCCGGAAAGCG-TNNGTGCTCAACTAGCTACTA--NTACTAG 83 consensus_14861#4 ATGGTATCACAA--ATGATTCGGAGAA---GTAGTAACAAATTTATTTGTG--GGTTTGC 197 consensus_14861#2 ATGCCTCTTCAGAAACAGGTCCACTACTTGACTTCTTCAATCTAGCTAGCCTAGGAATCT 406 * * consensus_14861#0 TGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGA 514 consensus_14861#1 TGCCACTTTGTGGTTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGA 531 consensus_14861#3 TATCATGTTGCAGCCTCT---TTCTTGGCTCTGATGATGATTGTAAAA---AGATACAGG 337 consensus_14861#5 TATCATGNTGCAGCCTCT---TTCTTGGCTCTGATGATGATTGTAAAA---AGATACAGG 137 consensus_14861#4 GGCCACCCTGGGAC-------TTCCAGGCAGTGATGGCGGTGAGCAGA---GAGCGGTTG 247 consensus_14861#2 TGTTTACCTACTAGT-----ACCAGTAATAAAAACAACTCTTTCTATATTCTTTCCACAT 461 * * * consensus_14861#0 TCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTG 574 consensus_14861#1 TCTACTCAGACTATGTCCAGGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTG 591 consensus_14861#3 TGTACA-GTG-CAGGATACG---CGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATC 392 consensus_14861#5 TGTACA-GTG-CAGGATACG---CGTTTCATTCCCTGTGCAAGTATATGTATTCCTCATC 192 consensus_14861#4 GGCACAAGTGTCTTGTTTGG---CATCCGAACATTGGTGACCGGAGACACAT-CCTTGTC 303 consensus_14861#2 AGTACTAATTTCTCCCTCATGCTGGTACTGCT-TCAGTGCCACTTTGTG-GTGTAAGTTC 519 ** * *** * * consensus_14861#0 ATATTTCAGATTATTTAAAGGGTTGTAGATTTC-TTCCAAAGCTTAACAATGAGTTACCA 633 consensus_14861#1 ATATTTCAGATTATTTAAAGGGTTGTAGATTTC-TTCCAAAGCTTAACAATGAGTTACCA 650 consensus_14861#3 ATGTATAC-ATTCACCAA--ACTAGGAGTTCAA-GTAACAAGTACTCCTATATATGAAGA 448 consensus_14861#5 ATGTATAC-ATTCACCAA--ACTAGGAGTTCAA-GTAACAAGTACTCCTATATATGAAGA 248 consensus_14861#4 GCACACCC-ACATCTCAATGGCGTGGCGCTCGT-ACGAGTAGCCGTCCGACGCGATGCAC 361 consensus_14861#2 AT-CTCATTGTTTCCAAGTGATACCTAGTTTGTGATGAAAAGTTAAAATTTAATAATCCA 578 * * * ** consensus_14861#0 GGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATC 693 consensus_14861#1 GGTGAAAGAAATGCCACCTACAAGGAAAGGTTTAGCAGCTTAGAGAATTTGGTATTAATC 710 consensus_14861#3 CAAAATTGAGCTGTTCTTAAAAAAAAAAAAAAAAAAAA---------------------- 486 consensus_14861#5 CAAAATTGAG-------------------------------------------------- 258 consensus_14861#4 GGCTCTTGCATAACCCTCTTGAGTATGGGG------------------------------ 391 consensus_14861#2 AGATTGTGCATGGATCTTCTCAGATGACAC------------------------------ 608 * consensus_14861#0 ATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCA 753 consensus_14861#1 ATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCA 770 consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 GATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGG 813 consensus_14861#1 GATGGAGGTTTCGATCCTGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGG 830 consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 ATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGG 873 consensus_14861#1 ATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGAAATTCGTGTCCGTGCCAGGGGGG 890 consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 CACCTGGGTATTTCCAAGACTGACATGATGAAGTACATCGTGCCCTACTTGAAGGGAAAG 933 consensus_14861#1 CACCTGGGTATTTCCAAGACTGACA----------------------------------- 915 consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 GACAATGGAAAGGCTTGGATTGCTGCGACTTGGCGTGCCATCACCAACACCATCGGTGGG 993 consensus_14861#1 ------------------------------------------------------------ consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 GAAGCGTTTGTGCTCAACTAGCTACTAGTACTAGTATCATGTTGCAGCCTCTTTCTTGGC 1053 consensus_14861#1 ------------------------------------------------------------ consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 TCTGATGATGATTGTAAAAAGATACAGGTGTACAGTGCAGGATACGCGTTTCATTCCCTG 1113 consensus_14861#1 ------------------------------------------------------------ consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 TGCAAGTATATGTATTCCTCATCATGTATACATTCACCAAACTAGGAGTTCAAGTAACAA 1173 consensus_14861#1 ------------------------------------------------------------ consensus_14861#3 ------------------------------------------------------------ consensus_14861#5 ------------------------------------------------------------ consensus_14861#4 ------------------------------------------------------------ consensus_14861#2 ------------------------------------------------------------ consensus_14861#0 GTACTCCTATATATGAAGACAAAATTGAGCTGATCTTAAAAAAAAAA 1220 consensus_14861#1 ----------------------------------------------- consensus_14861#3 ----------------------------------------------- consensus_14861#5 ----------------------------------------------- consensus_14861#4 ----------------------------------------------- consensus_14861#2 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||