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Oryza sativa
cluster # 14865 cluster # 14865       Sequences # 18       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14865#0 length = 790 sequences # 13  
consensus_14865#1 length = 633 sequences # 2  
consensus_14865#2 length = 471 sequences # 2  
consensus_14865#3 length = 359 sequences # 1  

consensusID : consensus_14865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 790
fasta sequence
                              [CGAATT-CCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACTCCGGCGAAACCCAAAACCCTACTCCCTCGTCC-TCC-TCGTCGACGGCGGCGG-CGATGCTCCCGCAG-AGCC-AGAGCAGCTCGCTGCAGC-GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA-GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG-CAAAAAGGTGGAATATGTACTTGAGAAGCT-GGATGCTATGCAAAAGAA-CATTG-A-GG-AATGTTCTACTACT-AGTT-AATTGATAACT-AGTTATCTACCTACCTAC-TGGTTTACAGTGGCACAAGTGTGACT-GAGCGGTTTACAAAGGAACATGAGTG-T--CGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACT-GCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACATGCTTGCTTGCTAAAAAAAAAAAAAAAAAAAAAAAACGTCATGCCGTTACGTAGCGTATCGTTAAG]

[+] EMBL CF281157             [CGAATT CCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACTCCGGCGAAACCCAAAACCCTACTCCCTCGTCC TCC TCGTCGACGGCGGCGG CGATGCTCCCGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGAGGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTG AGGG AATGTTCTACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAGTGGCACAAGTGTGACTGGAGCGGTTTACAAAGGAACATGAGTG TTCCGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTAT                                                                                                                                                                                                                                ]
[+] EMBL CF281312             [CGAATTCCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACTCCGGCGAAACCCAAAACCCTACTCCCTCGTCC TCC TCGTCGACGGCGGCGG CGATGCTCCCGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTG A GG AATGTTCAACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAGTGGCACAAGTGTGACT GAGCGGTTTACAAAGGAACATGAGTGTT  CGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTAC                                                                                                                                                                                                       ]
[+] EMBL AK111066             [                                                 GAAACCCAAAACCCTACTCCCTCGTCC TCC TCGTCGACGGCGGCGG CGATGCTCCCGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGGCGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTG A GG  ATGTTCTACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAGTGGCACAAGTGTGACT GAGCGGTTTACAAAGGAACATGAGTG T  CGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGGAATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACT GCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGT                                                                        ]
[+] EMBL C93489               [                                                         AAACCCTACTCCCTCGTCC TCC TCGTCGACGGCGGCGG CGATGCTCCCGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGNACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCNTCGCTGGCCACTGCCGCNAGTTCATGCTCGCNATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTTCGAATATCGCCATTTTAAGAAagtnt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU063035             [                                                         AAACCCTACTCCCTCGTCC TCC TCGTCGACGGCGGCGG CGATGCTCCCGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTGAA GG AATGTTCTACTACTAAGTT AATTGATAACT AGTTATCTACCTACCTAC TTGGTTACAGTNGCACAAGTGT                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C74100               [                                                          AACCCTACTCCCTCGTCC TCC TCGTCGACGGCGGCGG CGATGCTCCCGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTNGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTNCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGANTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTG AGGG AATGTTCTACTACT A                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSC23231             [                                                            CCCTACTCCCTCGTCC TCC TCGTCGACGGCGGCGG CGATGCTCCCGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTNCGTNAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTTCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTG A GG AATGTTCTACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAG                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU165977             [                                                                       nGTCCTTCCTTNGTCGACGGCGCCGGCCAATGCTCCCGCAGAAGCCAAGAGCAGCTCGCTGCAGCGGGCTCANCCACGTCGAGCAGATGATAGTCCGGCCGGTGAATCTGGCC GGACGGTCATGAAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTG A GG AATGTTCTACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAGTGGCACAAGTGTGACT GAGCGGTTTACAAAGGAACATGAGTG T  CGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACT GCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACATGCTTGCTTGCTAAAAAAAAA                                             ]
[+] EMBL CA756036             [                                                                               C TCGTCGAAAACGGCGG CGATGCTCCCGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGATATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACNGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCANAAGAA CATTG A GG AATGTTCTACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAGTGGCACAAGTGTGACT GAGCGGTTTACAAAGGAACATGAGTG T  CGGTGTAGCCCGCTTGCANATGCACAAGGCATCATTGAACTATGANATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGGTGCACAGTGATNAACTGGGCAGT ACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGA                                                                                       ]
[+] EMBL C27361               [                                                                                                           CGCAG AGCC AGAGCAGCTCGCTGCAGC GGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCNAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCTGGGATGCTATGCAAAAGAACCATTG A GG AATGTTCTACTACT AGTTNAATTGAT ACTNAGTTATCTACCTACCTACTTGGTTTACAGT                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CF281158             [                                                                                                                                                                                 TCTGGCCGGGACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGA GGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTG A GG AATGTTCTACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAGTGGCACAAGTGTGACT GAGCGGTTTACAAAGGAACATGAGTG T  CGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACT GCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACATGCTTGCTTGCTAAAAAAAAAAAAAAAAAAAAAAAACGTCATGCCGTTACGTAGCGTATCGTTAAG]
[+] EMBL AU222506             [                                                                                                                                                                                                                                                     CACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTG CAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAA CATTG A GG AATGTTCTACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAGTGGCACAAGTGTGACT GAGCGGTTTACAAAGGAACATGAGTG T  CGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACT GCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACATGCTTGCTTGCTAAAAAAAA                                              ]
[+] EMBL AU092625             [                                                                                                                                                                                                                                                                                                                                                       CTACAGTGCAAGGATTGCTAATGAGATTTGTTGCCAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAC CATTG A GGNAATGTTCTACTACT AGTT AATTGATAACT AGTTATCTACCTACCTAC TGGTTTACAGTGGCACAAGTGTGACT GAGCGGTTTACAAAGGAACATGAGTG T  CGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTA CTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACT GCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACATGCTTGCTTGCTAAAAAAAA                                              ]


>consensus_14865#0 CGAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACTCCGGCGAAACCCAAAAC CCTACTCCCTCGTCCTCCTCGTCGACGGCGGCGGCGATGCTCCCGCAGAGCCAGAGCAGC TCGCTGCAGCGGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGG ACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGAGGGCGTCGCTGGCCAC TGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAA AGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAG ATTTGTTGCAAAAAGGTGGAATATGTACTTGAGAAGCTGGATGCTATGCAAAAGAACATT GAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTATCTACCTACCTACTGGTTTACA GTGGCACAAGTGTGACTGAGCGGTTTACAAAGGAACATGAGTGTCGGTGTAGCCAGCTTG CAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTTT GGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTT ACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTG CACATGCTTGCTTGCTAAAAAAAAAAAAAAAAAAAAAAAACGTCATGCCGTTACGTAGCG TATCGTTAAG



consensusID : consensus_14865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence
                              [GATCTGGCCGGACGTCATGAGACTGGGAACGCCA-CTGGCCCCGCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCCCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTGC-AAAAGGTGGAATATGTACTTGAGAAGCTGGATGCTATGC-AAAGAAC-TTGAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTATCTACCTACCTACTGGTTTACAGTGGCACAAGTGTGACTGAGCGGTTTAC-AAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCGTTGGTTTAGGTGGTTGCACAGTGATAAACTGCATGTAACCACTTCAGCCTTACAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACA-TGCTTGCTTGCTAAAAAAAAAAAAAAAAAAACCC]

[+] EMBL BI805322             [GATCTGGCCGGACGTCATGAGACTGGGAACGCCA CTGGCCCCGCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCCCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTGC AAAAGGTGGAATATGTACTTGAGAAGCTGGATGCTATGC AAAGAAC TTGAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTATCTACCTACCTACTGGTTTACAGTGGCACAAGTGTGACTGAGCGGTTTAC AAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCGTTGGTTTAGGTGGTTGCACAGTGATAAACTGCATGTAACCACTTCAGCCTTACAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACA TGCTTGCTTGCTAAAAAAA               ]
[+] EMBL CA753598             [                       gGGGAACGCCACCGGGCCCCGCACCGAGGGCGTCGCTGGCCACTGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTGTTGCAAAAAGGTGGAATATGTACTTGAGAAGCTGGATGCTATGCAAAAGAACATTGAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTATCTACCTACCTACTGGTTTACAGTGGCACAAGTGTGACTGAGCGGTTTACAAAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCGTTGGTTTAGGTGGTNGCACAGTGATAAACTGCATGTAACCACTTCAGCCTTACAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTNGCACATTGCTTGC TGCTAAAAAAAAAAAAAAAAAAACCC]


>consensus_14865#1 GATCTGGCCGGACGTCATGAGACTGGGAACGCCACTGGCCCCGCACCGAGGGCGTCGCTG GCCACTGCCGCGAGTTCATGCTCCCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAA TCAAAAGTGCTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTA ATGAGATTTGTTGCAAAAGGTGGAATATGTACTTGAGAAGCTGGATGCTATGCAAAGAAC TTGAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTATCTACCTACCTACTGGTTTA CAGTGGCACAAGTGTGACTGAGCGGTTTACAAGGAACATGAGTGTCGGTGTAGCCAGCTT GCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACAGTGCTT TGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTT TACAGGGCGTTGGTTTAGGTGGTTGCACAGTGATAAACTGCATGTAACCACTTCAGCCTT ACAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACAT GCTTGCTTGCTAAAAAAAAAAAAAAAAAAACCC



consensusID : consensus_14865#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 471
fasta sequence
                              [ACATTGCGTGAGNAAATCAAAAGTGCTTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTNTTGCAAAAAGGTGGAATATGTACTTGAGAAGCTGGATGCTATGCAAAAGAACATTGAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTATCTACCTACCTACTGGTTTACAGTGGCACAAGTNTGACTGAGCGGTTTACAAAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAANTGCACAAGGCATCATTGAACTATGAAATGTAATTT-ACTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029387             [ACATTGCGTGAGNAAATCAAAAGTGCTTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGAGATTTNTTGCAAAAAGGTGGAATATGTACTTGAGAAGCTGGATGCTATGCAAAAGAACATTGAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTATCTACCTACCTACTGGTTTACAGTGGCACAAGTNTGACTGAGCGGTTTACAAAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAANTGCACAAGGCATCATTGAACTATGAAATGTAATTT ACTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCACAAAAAAAAAAAAAAAA           ]
[+] EMBL AU181699             [                                                                                                                                                                                                                         nTGAGCGGTTTACAAAGGAACATNAGNGTCGGTGTAGCCAGCTTGCAAATGCCCAAGGCATCATTGAACTATGAAATGTAATTTNCCTTCGGTTTNCAGTGCTTTGGTTTAGGTGGTTGCCCAGTGATAAACTGCAAGTAACCNCTTCAGTNTTGCANAAGGTTTACAGGGCAGAATNTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14865#2 ACATTGCGTGAGNAAATCAAAAGTGCTTTGCGAATATCGCCCATTTGAGAAGTGTGACTA CAGTGCAAGGATTGCTAATGAGATTTNTTGCAAAAAGGTGGAATATGTACTTGAGAAGCT GGATGCTATGCAAAAGAACATTGAGGAATGTTCTACTACTAGTTAATTGATAACTAGTTA TCTACCTACCTACTGGTTTACAGTGGCACAAGTNTGACTGAGCGGTTTACAAAGGAACAT GAGTGTCGGTGTAGCCAGCTTGCAANTGCACAAGGCATCATTGAACTATGAAATGTAATT TACTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCA CTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACTCGT ATGAAATGAAAGGAATGGTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14865#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence
                              [GGGAAACTTGACCCNTAAAACCCCGGACCCCTTTCCNAAAGACCNTTNGGGGATTGGNCCTCCCACCAGGTNAATGAAAACCAAGTTANCCTACCTACCTACTGGTTTACAGTGGCACCAGTGTGACCTGACCGGTTTACAAAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACCCGTATGAAATGAAAGGAATGGTTGCACATGCT]

[+] EMBL D42874               [GGGAAACTTGACCCNTAAAACCCCGGACCCCTTTCCNAAAGACCNTTNGGGGATTGGNCCTCCCACCAGGTNAATGAAAACCAAGTTANCCTACCTACCTACTGGTTTACAGTGGCACCAGTGTGACCTGACCGGTTTACAAAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACTTCGGTTTACAGTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAGAATCTGAAATGAATGCTTGCTAGTACCCGTATGAAATGAAAGGAATGGTTGCACATGCT]


>consensus_14865#3 GGGAAACTTGACCCNTAAAACCCCGGACCCCTTTCCNAAAGACCNTTNGGGGATTGGNCC TCCCACCAGGTNAATGAAAACCAAGTTANCCTACCTACCTACTGGTTTACAGTGGCACCA GTGTGACCTGACCGGTTTACAAAGGAACATGAGTGTCGGTGTAGCCAGCTTGCAAATGCA CAAGGCATCATTGAACTATGAAATGTAATTTACTTCGGTTTACAGTGCTTTGGTTTAGGT GGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAGAAGGTTTACAGGGCAG AATCTGAAATGAATGCTTGCTAGTACCCGTATGAAATGAAAGGAATGGTTGCACATGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14865#0      CGAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACTCCGGCGAAACCCAAAAC 60
consensus_14865#2      ------------------------------------------------------------
consensus_14865#1      ------------------------------------------------------------
consensus_14865#3      ------------------------------------------------------------
                                                                                   

consensus_14865#0      CCTACTCCCTCGTCCTCCTCGTCGACGGCGGCGGCGATGCTCCCGCAGAGCCAGAGCAGC 120
consensus_14865#2      ------------------------------------------------------------
consensus_14865#1      ------------------------------------------------------------
consensus_14865#3      ------------------------------------------------------------
                                                                                   

consensus_14865#0      TCGCTGCAGCGGCTCAACCACGTCGAGCAGATGATAGTCCGGGCGGTGAATCTGGCCGGG 180
consensus_14865#2      ------------------------------------------------------------
consensus_14865#1      -----------------------------------------------------GATCTGG 7
consensus_14865#3      ------------------------------------------------------------
                                                                                   

consensus_14865#0      ACGGTCATGGAGGAGCTGGGGAACGCCACTGGGCCCCGCACCGAGGGCGTCGCTGGCCAC 240
consensus_14865#2      ------------------------------------------------------------
consensus_14865#1      CCGGACGTCATGAGACTGGG-AACGCCACTGG-CCCCGCACCGAGGGCGTCGCTGGCCAC 65
consensus_14865#3      ------------------------------------------------------------
                                                                                   

consensus_14865#0      TGCCGCGAGTTCATGCTCGCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAA 300
consensus_14865#2      ---------------------------------------ACATTGCGTGAGNAAATCAAA 21
consensus_14865#1      TGCCGCGAGTTCATGCTCCCCATGAAGGAAATTCAAACGACATTGCGTGAGGAAATCAAA 125
consensus_14865#3      ------------------------------------------------------------
                                                                                   

consensus_14865#0      AGTGCTT-GCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGA 359
consensus_14865#2      AGTGCTTTGCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGA 81
consensus_14865#1      AGTGCTT-GCGAATATCGCCCATTTGAGAAGTGTGACTACAGTGCAAGGATTGCTAATGA 184
consensus_14865#3      ------------------------------------------------------------
                                                                                   

consensus_14865#0      GATTTGTTGCAAAAAGGTGGAATATGTACTTGAGAAGCTGGATGC-TATGCAAAAGAACA 418
consensus_14865#2      GATTTNTTGCAAAAAGGTGGAATATGTACTTGAGAAGCTGGATGC-TATGCAAAAGAACA 140
consensus_14865#1      GATTTGTTGCAAAA-GGTGGAATATGTACTTGAGAAGCTGGATGC-TATGCAAA-GAAC- 240
consensus_14865#3      ---------------GGGAAACTTGACCCNTAAAACCCCGGACCCCTTTCCNAAAGACCN 45
                                      **   * *     * * * *  * ***  * * * * ** ** * 

consensus_14865#0      TTGAGGAAT--GTTCTACTACTAGTTAATTGATAACTA-GTTATC-TACCTACCTACTGG 474
consensus_14865#2      TTGAGGAAT--GTTCTACTACTAGTTAATTGATAACTA-GTTATC-TACCTACCTACTGG 196
consensus_14865#1      TTGAGGAAT--GTTCTACTACTAGTTAATTGATAACTA-GTTATC-TACCTACCTACTGG 296
consensus_14865#3      TTNGGGGATTGGNCCTCCCACCAGGTNAATGAAAACCAAGTTANCCTACCTACCTACTGG 105
                       **  ** **  *  ** * ** ** * * *** *** * **** * **************

consensus_14865#0      TTTACAGTGGCACAAGTGTGAC-TGAGCGGTTTACAAAGGAACATGAGTGTCGGTGTAGC 533
consensus_14865#2      TTTACAGTGGCACAAGTNTGAC-TGAGCGGTTTACAAAGGAACATGAGTGTCGGTGTAGC 255
consensus_14865#1      TTTACAGTGGCACAAGTGTGAC-TGAGCGGTTTACAA-GGAACATGAGTGTCGGTGTAGC 354
consensus_14865#3      TTTACAGTGGCACCAGTGTGACCTGACCGGTTTACAAAGGAACATGAGTGTCGGTGTAGC 165
                       ************* *** **** *** ********** **********************

consensus_14865#0      CAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACA 593
consensus_14865#2      CAGCTTGCAANTGCACAAGGCATCATTGAACTATGAAATGTAATTTAC-TTCGGTTTACA 314
consensus_14865#1      CAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTACCTTCGGTTTACA 414
consensus_14865#3      CAGCTTGCAAATGCACAAGGCATCATTGAACTATGAAATGTAATTTAC-TTCGGTTTACA 224
                       ********** ************************************* ***********

consensus_14865#0      GTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAG 653
consensus_14865#2      GTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAG 374
consensus_14865#1      GTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAG 474
consensus_14865#3      GTGCTTTGGTTTAGGTGGTTGCACAGTGATAAACTGCAAGTAACCACTTCAGTCTTGCAG 284
                       ************************************************************

consensus_14865#0      AAGGTTTACAGGGC---------------------------------------------- 667
consensus_14865#2      AAGGTTTACAGGGC---------------------------------------------- 388
consensus_14865#1      AAGGTTTACAGGGCGTTGGTTTAGGTGGTTGCACAGTGATAAACTGCATGTAACCACTTC 534
consensus_14865#3      AAGGTTTACAGGGC---------------------------------------------- 298
                       **************                                              

consensus_14865#0      --------AGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTT 719
consensus_14865#2      --------AGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTT 440
consensus_14865#1      AGCCTTACAGAATCTGAAATGAATGCTTGCTAGTACTCGTATGAAATGAAAGGAATGGTT 594
consensus_14865#3      --------AGAATCTGAAATGAATGCTTGCTAGTACCCGTATGAAATGAAAGGAATGGTT 350
                               **************************** ***********************

consensus_14865#0      GCACATGCTTGCTTGCTAAAAAAAAAAAAAAAAAAAAAAAACGTCATGCCGTTACGTAGC 779
consensus_14865#2      GCACAAA----------AAAAAAAAAAAAAAAAAAAAAAAA------------------- 471
consensus_14865#1      GCACATGCTTGCTTGCTAAAAAAAAAAAAAAAAAAACCC--------------------- 633
consensus_14865#3      GCACATGCT--------------------------------------------------- 359
                       *****                                                       

consensus_14865#0      GTATCGTTAAG 790
consensus_14865#2      -----------
consensus_14865#1      -----------
consensus_14865#3      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)