|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence
[GGGGGGAAAAAGAAGACGACGACGGCGACGAAGAAGAAGGAGTTGATGTCTCAAGCCGAGATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTATGAGAAAGGCTATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAGAAAAAACCTTACCTTCTGGTGAAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTCTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAACAAGCTGAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTTAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTCAATTATCAGTTTTTGGTTCAATATTTCTTGGTTAGCACAACAGATCAGCATTAGCAGCAACACTGGTAAAATACTAACACAATATCTGAACGAAAACATCCTTTTCAATATAAAATACACGNTTTATCANGCGCCTCAAGCCGTAG]
[+] EMBL CA766587 [GGGGGGAAAAAGAAGACGACGACGGCGACGAAGAAGAAGGAGTTGATGTCTCAAGCCGAGATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTATGAGAAAGGCTATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAGAAAAAACCTTACCTTCTGGTGAAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTCTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAACAAGCTGAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTTAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTCAATTATCAGTTTTTGGTTCAATATTTCTTGGTTAGCACAACAGATCAGCATTAGCAGCAACACTGGTAAAATACTAACACAATATCTGAACGAAAACATCCTTTTCAATATAAAATACACGNTTTATCANGCGCCTCAAGCCGTAG]
consensusID : consensus_149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[GACGAGACAAGGGGAAGGAGTTGATGTCTCAAGCCGAGATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTGTGAGAAAGGCTATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAGAAAAAACCTTACCTTCTGGTGGAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTTTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAGCAAGCTGAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTCAATTATCAGTTTTTGGTTTAATAAAAAAAAAAAA]
[-] EMBL CA761907 [GACGAGACAAGGGGAAGGAGTTGATGTCTCAAGCCGAGATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTTGGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCAAGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTGTGAGAAAGGCTATGTGGAGAAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGGTAAAGATGGAGAAAAAACCTTACCTTCTGGTGGAGCTGATGGAGAAGAAACCTTACCTGCTGGCGACCAAGAATCCTTTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCAAAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAGCAAGCTGAATTAGCTACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTTAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTCAATTATCAGTTTTTGGTTTAATAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_149#0 GGGGGGAAAAAGAAGACGACGACGGCGACGAAGAAGAAGGAGTTGATGTCTCAAGCCGAG 60
consensus_149#1 --------------------GACGA-GAC-AAGGGGAAGGAGTTGATGTCTCAAGCCGAG 38
**** *** *** *************************
consensus_149#0 ATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTT 120
consensus_149#1 ATTGATAGCCACATCCGGTACCAAACCGTGGAGTTTCGTGAGGAGGACATGGTTAAGGTT 98
************************************************************
consensus_149#0 GGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCA 180
consensus_149#1 GGGGATCATATGGATGAATACTTTGCTAAGATCATCCGTGATATAAACCGGATTGAATCA 158
************************************************************
consensus_149#0 AGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTATGAGAAAGGCTATGTGGAG 240
consensus_149#1 AGGCATATGAGAGCGAGAGACAATGTTCTGAAACAGTACTGTGAGAAAGGCTATGTGGAG 218
**************************************** *******************
consensus_149#0 AAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGG 300
consensus_149#1 AAAGACGCTTATCAGAAAGGCTACGAAGCTGCAGGTGAAGATGAAGAATCGATCTGCAGG 278
************************************************************
consensus_149#0 TAAAGATGGAGAAAAAACCTTACCTTCTGGTGAAGCTGATGGAGAAGAAACCTTACCTGC 360
consensus_149#1 TAAAGATGGAGAAAAAACCTTACCTTCTGGTGGAGCTGATGGAGAAGAAACCTTACCTGC 338
******************************** ***************************
consensus_149#0 TGGCGACCAAGAATCCTCTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCA 420
consensus_149#1 TGGCGACCAAGAATCCTTTCCTGCAGGCGCTGAAGATTTCCCTGCTCCTCATCCTGGTCA 398
***************** ******************************************
consensus_149#0 AAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAACAAGCTGAATTAGCT 480
consensus_149#1 AAGAAGGTTTCGACCGGGTGTTTCCATCAATGGAGGAAAAGTTAGCAAGCTGAATTAGCT 458
******************************************** ***************
consensus_149#0 ACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTT 540
consensus_149#1 ACTAAGCGATGTGCTGATACACTTCGCTGATTAGCAGTCGAGTCGTTCTTTTTTTTTTTT 518
************************************************************
consensus_149#0 TAAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTC 600
consensus_149#1 -AAGATTTACCTACTAGTTGTCGTAGTATCTTCCTGTGTTGGATTATGGAACTCAATCTC 577
***********************************************************
consensus_149#0 AATTATCAGTTTTTGGTTCAATATTTCTTGGTTAGCACAACAGATCAGCATTAGCAGCAA 660
consensus_149#1 AATTATCAGTTTTTGGTTTAATAAAAAAAAAAAA-------------------------- 611
****************** **** *
consensus_149#0 CACTGGTAAAATACTAACACAATATCTGAACGAAAACATCCTTTTCAATATAAAATACAC 720
consensus_149#1 ------------------------------------------------------------
consensus_149#0 GNTTTATCANGCGCCTCAAGCCGTAG 746
consensus_149#1 --------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||