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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1001 fasta sequence
[GAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGAGGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTGTTGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATATGCTCAAGAACGCACCCATGTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTCTTGGAGTCGGGCGTGGCCGCGCGGTTGCAATGCGTGCCCCGTCTGCTGCTGGTCGTTGTGTTGGTCCTGTTGCACGGGGTTTTGCACCTCCCTTTATGAAATTCAATGCCTGTACTTATTATCTTGTCTTAAGTCGTTGATGCTTTAATGTGAAATTCACTGCTTATAATTTTTACACTCCCCGCCGTTGCTTTTTTTCTGTACTCTCTCGTTCCGCGGCTGATTCGTAACTCTTTTCCTAATTTAATTTTACCTCTCTTCTCTTACATTTTTTTACTCCTCTGTTGTTGTTTGCACGGTCGGTCCAACTTCCATCATCTATGCTTTTATTCCTATGTGTATTTCTTCTCCTCTCGTTGCCCCTCTTAATTTGTTTTTCTGATATCTATTCTATTTCTTTATGACTTTTTCCCATGTCTTCTTCCAATATAGCCTTTCATCTTAACTTTTTCCCTCATTGTCCTGTGTTTTTCACTCGTTCTCTTCTTGTAGGCTCTTGGCCCAAAGTGCTATCATATTTTACAGACGTATGCAGTGGTTCTTGTGTCACGTCTTTGTCTCGAGTAGTATAAATGTACTTATCATATACGAAGTTAGNTTGTGGATGTGAGCTTTATTCTCATA]
[+] EMBL BE039814 [GAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGAGGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTGTTGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATATGCTCAAGAACGCACCCATGTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTCTTGGAGTCGGGCGTGGCCGCGCGGTTGCAATGCGTGCCCCGTCTGCTGCTGGTCGTTGTGTTGGTCCTGTTGCACGGGGTTTTGCACCTCCCTTTATGAAATTCAATGCCTGTACTTATTATCTTGTCTTAAGTCGTTGATGCTTTAATGTGAAATTCACTGCTTATAATTTTTACACTCCCCGCCGTTGCTTTTTTTCTGTACTCTCTCGTTCCGCGGCTGATTCGTAACTCTTTTCCTAATTTAATTTTACCTCTCTTCTCTTACATTTTTTTACTCCTCTGTTGTTGTTTGCACGGTCGGTCCAACTTCCATCATCTATGCTTTTATTCCTATGTGTATTTCTTCTCCTCTCGTTGCCCCTCTTAATTTGTTTTTCTGATATCTATTCTATTTCTTTATGACTTTTTCCCATGTCTTCTTCCAATATAGCCTTTCATCTTAACTTTTTCCCTCATTGTCCTGTGTTTTTCACTCGTTCTCTTCTTGTAGGCTCTTGGCCCAAAGTGCTATCATATTTTACAGACGTATGCAGTGGTTCTTGTGTCACGTCTTTGTCTCGAGTAGTATAAATGTACTTATCATATACGAAGTTAGNTTGTGGATGTGAGCTTTATTCTCATA]
consensusID : consensus_14917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 915 fasta sequence
[TCTCTTTTTTTTCCCTGTCCGCTTTGCTTCGCCTGAGCCCTGAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA-GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGG-TGTCGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATA-TGCTCAAGAACGCACCCA-TGTTCAAG-CGCCTGGAA-GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA-GT-CGG-GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGT-GCACCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCCTTTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAAATTCATGTGCTCCAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATAAGTTATTATAACGCACTTTGTAT]
[+] EMBL AK061178 [TCTCTTTTTTTTCCCTGTCCGCTTTGCTTCGCCTGAGCCCTGAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGG TGTCGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATA TGCTCAAGAACGCACCCA TGTTCAAG CGCCTGGAA GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA GT CGG GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGT GCACCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCCTTTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAAATTCATGTGCTCCAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATAAGTTATTATAACGCAC ]
[+] EMBL AK121552 [ TGCTTCGCCTGAGCCCTGAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGG TGTCGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATA TGCTCAAGAACGCACCCA TGTTCAAG CGCCTGGAA GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA GT CGG GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGT GCACCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCCTTTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAAATTCATGTGCTCCAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATAAGTTATTATAACGCACTTTGTAT]
[+] EMBL AK059292 [ GCTTCGCCTGAGCCCTGAGCCGCCGCCTCCCGTACTCCCTTGCGAGCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGG TGTCGCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATA TGCTCAAGAACGCACCCA TGTTCAAG CGCCTGGAA GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA GT CGG GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGT GCACCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGT ]
[+] EMBL OSC27711 [ GCTGGGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAGCCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCACGCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTTGTCGCAGCTGNAGCACGTCTTCATCACAGGAAGCACAGTGAGATTTATGATTATACCGGATATTGNTCAAGAACGCACCCATTGTTCAAG CGNCTGGAACGCAACGATTANGGGGANANGNTCACCTATTGTANGT CGGTNCGTGnaccttg ]
[+] EMBL AU031242 [ ccgGGATA TGCTCAAGAACGCACCCA TGTTCAAGCCGCCTGGAA GCAAGGATTAGGGGCAAAGGATCAGCTATTGGA GTCCGG GCGTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGTNGC CCTCCGGTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTAAACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCaaaaa ]
consensusID : consensus_14917#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 707 fasta sequence
[CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG-TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT-GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC]
[+] EMBL AK103689 [CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATGATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGC ]
[+] EMBL CF309010 [CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGGGGCTAGGATTAGGGGTAAAGGCTCA CTATTGGGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGC ]
[+] EMBL CF296983 [CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCT ]
[+] EMBL AK061193 [ CCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGC ]
[+] EMBL AK061558 [ CTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGC ]
[+] EMBL C27983 [ ACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTNTTGGCCGTGGCCGTGCCGTTGCTATNCGTTCTCGGGCTGCTtc ]
[-] EMBL CF320128 [ CGAGGACAACTGGAACTGCCAGCTCGACAACATTCCCTTCACCGCCAAGG CGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC]
[+] EMBL AU085795 [ GCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATG TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGNGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGC ]
[-] EMBL CF296982 [ GGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCA G TTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC]
[-] EMBL CF309011 [ GCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATGNTTCAAGCGCCTCGGGGCTAGGATTAGGGGTAAAGGCTCAGCTATT GGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGTGGTCCAGTTGGACGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC]
[-] EMBL OSA312768 [ TCGTGGTGGTGGTCCAGTTGGAC GGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGAGGAAGTCCAGGGAGTCTTTGTGTTCATCATCCAAAACGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCC]
consensusID : consensus_14917#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[ATGGACTGAAGGAGTAGAAATCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATGTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATTGGGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGGTGGTCCAGTTGGACGGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGNAGGAAGTCCAGGGGAGTCTTTGTGTTCATCATCCAAAACCGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCCTGTGTGCAG]
[+] EMBL CF320127 [ATGGACTGAAGGAGTAGAAATCCGCCGCCGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTCGCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAGCCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCTCAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCAGCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTTCATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATGTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATTGGGTGTTGGCCGTGGCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGGTGGTCCAGTTGGACGGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTATGCTGTTATGATATGGNAGGAAGTCCAGGGGAGTCTTTGTGTTCATCATCCAAAACCGTTGGTTCAGCAGCCAGAGTGCATGTGAGCTAAGCTTATGTACCTCCATCCAGTTTAGTTTGCCTGTGTGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14917#2 CCCCTCGCCTCCATCTCTCTCATCTGCCCTCCTCGACTCGACTCGACTCCCCTCCGCCGC 60
consensus_14917#3 -------------------------------ATGGACT-GAAGGAGTAGAAATCCGCCGC 28
consensus_14917#1 ---------------------------------------------TCTCTTTTTTTTCCC 15
consensus_14917#0 ------------------------------------------------------------
consensus_14917#2 CGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTC 120
consensus_14917#3 CGCCGCCGCCATCTTCCTCCTCCACCAGACCACCACCACCACCAACAACAACTCGTCGTC 88
consensus_14917#1 TGTCCGCTTTGCTTCGCCTGAGCCCTGAGCCGCCGCCTCC-CGTACTCCCTTGCGAGCTG 74
consensus_14917#0 --------------------------GAGCCGCCGCCTCC-CGTACTCCCTTGCGAGCTG 33
** ** ** ** * ** * ** *
consensus_14917#2 GCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAG 180
consensus_14917#3 GCGTCTGCCTAGCTAGGGTTTCCCTTCTCTACCCAACCCTAGGAGGAAGATGAGCCGCAG 148
consensus_14917#1 GGGTTTTAGCGGCGGCGGCGAGAGGAGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAG 134
consensus_14917#0 GGGTTTTAGCGGCGGCGGCGAGAGAGGAGGAGGAGGAGGAGAGGGGAAGATGAGCCGGAG 93
* ** * ** ** * * ************* **
consensus_14917#2 CCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCT 240
consensus_14917#3 CCTTGGTATCCCAGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACCGTGGAGCT 208
consensus_14917#1 CCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCT 194
consensus_14917#0 CCTGGGGATCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTGGTGACGGTGGAGCT 153
*** ** ***** ************************************** ********
consensus_14917#2 CAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCA 300
consensus_14917#3 CAAGACCGGCGAGGTGTACCGCGGCTCCATGGTCGAGTGCGAGGACAACTGGAACTGCCA 268
consensus_14917#1 CAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA 254
consensus_14917#0 CAAGACCGGCGAGGTGTACCGCGGCGCCATGGTGGAGTGCGAGGACAACTGGAACTGCCA 213
************************* ******* **************************
consensus_14917#2 GCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTT 360
consensus_14917#3 GCTCGACAACATCACCTTCACCGCCAAGGACGGCAAGGTCTCCCAGCTGGAGCACGTCTT 328
consensus_14917#1 GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTGTCGCAGCTGGAGCACGTCTT 314
consensus_14917#0 GCTCGACAACATCACCTTCACCGCCAAGGATGGCAAGGTGTTGCAGCTGGAGCACGTCTT 273
****************************** ******** * *****************
consensus_14917#2 CATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCAT 420
consensus_14917#3 CATCAGAGGAAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCAT 388
consensus_14917#1 CATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATATGCTCAAGAACGCACCCAT 374
consensus_14917#0 CATCAGAGGAAGCAGAGTGAGATTTATGATTATACCGGATATGCTCAAGAACGCACCCAT 333
*************** ** ** ** ***** ***** ** ************** *****
consensus_14917#2 GTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATTGG-TGTTGGCCGTG 479
consensus_14917#3 GTTCAAGCGCCTCGAGGCTAGGATTAGGGGTAAAGGCTCAGCTATTGGGTGTTGGCCGTG 448
consensus_14917#1 GTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTATTGG-AGTCGGGCGTG 433
consensus_14917#0 GTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTCTTGG-AGTCGGGCGTG 392
************ ** ** *********** ***** ****** **** ** ** ****
consensus_14917#2 GCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGG-TGGTCCAGTTGGA 538
consensus_14917#3 GCCGTGCCGTTGCTATGCGTGCTCGGGCTGCTGCTGGTCGTGGTGGGTGGTCCAGTTGGA 508
consensus_14917#1 GCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGG-TGGTCCTGTTGGA 492
consensus_14917#0 GCCGCGCGGTTGCAATGCGTGCCCCGTCTGCTGCTGGTCGTTGTGT-TGGTCCTGTTGCA 451
**** ** ***** ******** * * ************** *** ****** **** *
consensus_14917#2 CGGGG-TGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTAT-GC---- 592
consensus_14917#3 CGGGGGTGGTGCACCTCCTGTGAGGCGGTAGATTTACGGGCAGCTCATTGTAT-GC---- 563
consensus_14917#1 CGGGG-TGGTGCACCTCCGGTGAGGAGATAGATTGTCTGTCATCT-ATTATCT-GCCTGA 549
consensus_14917#0 CGGGG-TTTTGCACCTCCCTTTATGAAATTCAATGCCTGT--ACTTATTATCTTGTCTTA 508
***** * ********* * * * * * * * * ** *** * * *
consensus_14917#2 ---------TGTTATGATATGGA--GGAAGTCCAGGG-AGTC-----------TTTGTGT 629
consensus_14917#3 ---------TGTTATGATATGGNA-GGAAGTCCAGGGGAGTC-----------TTTGTGT 602
consensus_14917#1 GGAAGTTGATGCCTTAATTTGAAA-ACATTGCTTGAGAATTAAACA------GCCAGTGT 602
consensus_14917#0 AGTCGTTGATGCTTTAATGTGAAATTCACTGCTTATAATTTTTACACTCCCCGCCGTTGC 568
** * ** ** * * * **
consensus_14917#2 TCATCAT-CCAAAAC-GTTGGTTCA--GCAGCCAGAGTGCATGT-----GAGCTAAGCTT 680
consensus_14917#3 TCATCAT-CCAAAACCGTTGGTTCA--GCAGCCAGAGTGCATGT-----GAGCTAAGCTT 654
consensus_14917#1 GCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTC 662
consensus_14917#0 TTTTTTTCTGTACTCTCTCGTTCCGCGGCTGATTCGTAACTCTTTTCCTAATTTAATTTT 628
* * * * * * * * * *
consensus_14917#2 ATGTACCTCCATC--CAGTTTAGTTTGCC------------------------------- 707
consensus_14917#3 ATGTACCTCCATC--CAGTTTAGTTTGCCTGTGTGCAG---------------------- 690
consensus_14917#1 ATGTATTTTTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTG 722
consensus_14917#0 ACCTCTCTTCTCT--TACATTTTTTTACTCCTCTGTTGTTGTTTGCACGGTCGGTCCAAC 686
* * * * * *
consensus_14917#2 ------------------------------------------------------------
consensus_14917#3 ------------------------------------------------------------
consensus_14917#1 TGTTCGTTAACCTGATTTGAATGACAAGACCAGTTTCCCCTGTCATTGAGCGAATTTCCT 782
consensus_14917#0 TTCCATCATCTATGCTTTTATTCCTATGTGTATTTCTTCTCCTCTCGTTGCCCCTCTTAA 746
consensus_14917#2 ------------------------------------------------------------
consensus_14917#3 ------------------------------------------------------------
consensus_14917#1 TTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAAATTCATGTGCTC 842
consensus_14917#0 TTTGTTTTTCTGATATCTATTCTATTTCTTTATG-ACTTTTTCCCATGTCTTCTTCCAAT 805
consensus_14917#2 ------------------------------------------------------------
consensus_14917#3 ------------------------------------------------------------
consensus_14917#1 CAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATAAGTTATTATA 902
consensus_14917#0 ATAGCCTTTCATCTTAACTTTTTCCCTCATTGTCCTGTGTTTTTCACTCGTTCTCTTCTT 865
consensus_14917#2 ------------------------------------------------------------
consensus_14917#3 ------------------------------------------------------------
consensus_14917#1 ACGCACTTTGTAT----------------------------------------------- 915
consensus_14917#0 GTAGGCTCTTGGCCCAAAGTGCTATCATATTTTACAGACGTATGCAGTGGTTCTTGTGTC 925
consensus_14917#2 ------------------------------------------------------------
consensus_14917#3 ------------------------------------------------------------
consensus_14917#1 ------------------------------------------------------------
consensus_14917#0 ACGTCTTTGTCTCGAGTAGTATAAATGTACTTATCATATACGAAGTTAGNTTGTGGATGT 985
consensus_14917#2 ----------------
consensus_14917#3 ----------------
consensus_14917#1 ----------------
consensus_14917#0 GAGCTTTATTCTCATA 1001
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||