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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1908 fasta sequence
[AGCAGTGTCTGTGTTTGGCACGTCCACGACAGCACGAGACG-GGTTGGGGACTTGGGGGGTTGAAGAAGCCAAGCTCTCCTTGGTTGGCGCGCACGTACGTTCGCTTCGCTTCGATTCGATGGCCACTGGTGACCCAAACCCTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTGAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCCTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTCCCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTATGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATTATTGTTGCCACACAGCCCAAGTTCAGCTGGTACCGTGCATTCGTCGCTGCAGGGCTATTGCTTGGTTTTGGAGTTAGTGCTGCTGTGTTTGTCAAGAAATTGCTCCTTCCTAGGCTTAAGTCTTGGATCCGCAAGGTCGTAGCTGAAGGTGATGAAAACGAGGGCAGGCAAATTAAGTCCAAGATCGATGAGGAAACTGCTGAAGCTGTAAAAGCTTCTGCATCTGCTGTTTCTGCTATTGCCAAAACTAACCAAGAATTGCTTGCTTCAAAGGATGAAGAAAAGAAGATACTTGTGACATTAACACAAGCACTAGATTCCCAAGCAAAAGAATTGAAATCCTTATGTGAGTCTCTGAACCATAGCAGGGATTCTATAAATATTACCAGGGAAGATAGGTTTTCTCAGTACCGGGCATTGGAAGAGCATGCCCCTTCTGCTGCAAGGAATGGGCCAGTTAACACTCCATGGAGAGCCTCTCAGCAAACTAATATGTATGGTGTGCCAAACAGTGATTTTGGCTCAGGGAGGCCTTCATTTGCGTCAACACATAATGAAGCTACACCTGGATCATTTTCAAGATCGTACGTTGAGACATCTGCTGCACACCGAGGGGATAATAGGTCTTCAGGGAGTAAGCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTATGGATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG-CCTCTTCCTGAAGA-GGCGCTTGTTAATGGC-AGTGACGCCGGACGTAGTGAGATCGAAGA-ACAAGCA-GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAGCTGTGACTGTGAGTAATACCGATACATTACATTACATTACATACATACA-CGGTGATTAAAACAAACAAGCAGACATTTTTACTTGGTTATGTTATGACAGGCAGAGATGGCATATGTTAAGGAAGGAT]
[+] EMBL AK062021 [AGCAGTGTCTGTGTTTGGCACGTCCACGACAGCACGAGACG GGTTGGGGACTTGGGGGGTTGAAGAAGCCAAGCTCTCCTTGGTTGGCGCGCACGTACGTTCGCTTCGCTTCGATTCGATGGCCACTGGTGACCCAAACCCTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTGAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCCTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTCCCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTATGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATTATTGTTGCCACACAGCCCAAGTTCAGCTGGTACCGTGCATTCGTCGCTGCAGGGCTATTGCTTGGTTTTGGAGTTAGTGCTGCTGTGTTTGTCAAGAAATTGCTCCTTCCTAGGCTTAAGTCTTGGATCCGCAAGGTCGTAGCTGAAGGTGATGAAAACGAGGGCAGGCAAATTAAGTCCAAGATCGATGAGGAAACTGCTGAAGCTGTAAAAGCTTCTGCATCTGCTGTTTCTGCTATTGCCAAAACTAACCAAGAATTGCTTGCTTCAAAGGATGAAGAAAAGAAGATACTTGTGACATTAACACAAGCACTAGATTCCCAAGCAAAAGAATTGAAATCCTTATGTGAGTCTCTGAACCATAGCAGGGATTCTATAAATATTACCAGGGAAGATAGGTTTTCTCAGTACCGGGCATTGGAAGAGCATGCCCCTTCTGCTGCAAGGAATGGGCCAGTTAACACTCCATGGAGAGCCTCTCAGCAAACTAATATGTATGGTGTGCCAAACAGTGATTTTGGCTCAGGGAGGCCTTCATTTGCGTCAACACATAATGAAGCTACACCTGGATCATTTTCAAGATCGTACGTTGAGACATCTGCTGCACACCGAGGGGATAATAGGTCTTCAGGGAGTAAGCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTATGGATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG CCTCTTCCTGAAGA GGCGCTTGTTAATGGC AGTGACGCCGGACGTAGTGAGATCGAAGA ACAAGCA GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAGCTGTGACTGTGAGTAATACCGATACATTACATTACATTACATACATACA CGG ]
[+] EMBL AK099093 [ TTGGCACGTCCACGACAGCACGAGACG GGTTGGGGACTTGGGGGGTTGAAGAAGCCAAGCTCTCCTTGGTTGGCGCGCACGTACGTTCGCTTCGCTTCGATTCGATGGCCACTGGTGACCCAAACCCTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTGAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCCTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTCCCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTATGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATTATTGTTGCCACACAGCCCAAGTTCAGCTGGTACCGTGCATTCGTCGCTGCAGGGCTATTGCTTGGTTTTGGAGTTAGTGCTGCTGTGTTTGTCAAGAAATTGCTCCTTCCTAGGCTTAAGTCTTGGATCCGCAAGGTCGTAGCTGAAGGTGATGAAAACGAGGGCAGGCAAATTAAGTCCAAGATCGATGAGGAAACTGCTGAAGCTGTAAAAGCTTCTGCATCTGCTGTTTCTGCTATTGCCAAAACTAACCAAGAATTGCTTGCTTCAAAGGATGAAGAAAAGAAGATACTTGTGACATTAACACAAGCACTAGATTCCCAAGCAAAAGAATTGAAATCCTTATGTGAGTCTCTGAACCGTAGCAGGGATTCTATAAATATTACCAGGGAAGATAGGTTTTCTCAGTACCGGGCATTGGAAGAGCATGCCCCTTCTGCTGCAAGGAATGGGCCAGTTAACACTCCATGGAGAGCCTCTCAGCAAACTAATATGTATGGTGTGCCAAACAGTGATTTTGGCTCAGGGAGGCCTTCATTTGCGTCAACACATAATGAAGCTACACCTGGATCATTTTCAAGATCGTACGTTGAGACATCTGCTGCACACCGAGGGGATAATAGGTCTTCAGGGAGTAAGCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTATGGATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG CCTCTTCCTGAAGA GGCGCTTGTTAATGGC AGTGCCGCCGGACGTAGTGAGATCGAAGA ACAAGCA GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAGCTGTGACTGTGAGTAATACCGATACATTACATTACATTACATACATACA CGGTGATTAAAACAAACAAGCAGACATTTTTACTTGGTTATGTTATGACAGGCAGAGATGGCATATG ]
[+] EMBL OSC107581 [ ACGACAGCACGAGACG GGTTGGGGACTTGGGGGGTTGAAGAAGCCAAGCTCTCCTTGGTTGGCGCGCACGTACGTTCGCTTCGCTTCGATTCGATGGCCACTGGTGACCCAAACCCTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTNAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCCTTCCGACGAGTTCCCGATCCG AAACCAGCGCTACTGCT ]
[+] EMBL CB636063 [ AGCACGAGACG GGTTGGGGACTTGGGGGGTTGAAGAAGCCAAGCTCTCCTTGGTTGGCGCGCACGTACGTTCGCTTCGCTTCGATTCGATGGCCACTGGTGACCCAAACCCTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTGAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAAGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCCTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTCCCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTATGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATTATTGTTGCCACACAGCCCAAGTTCAGCTGGTACCGTGCATTCGTCGCTGCAAGGCTATTGCTTGGTTTTGGAGTTAGTGCTG ]
[+] EMBL CB654122 [ AGCACGCTTTGAGGTTGGGGACTTGGGGGGTTGAAGAAGCCAAGCTCTCCTTGGTTGGCGCGCACGTACGTTCGCTTCGCTTCGATTCGATGGCCACTGGTGACCCAAACCCTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTGAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCCTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTCCCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTATGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATTATTGTTGCCACACAGCCCAAGTTCAGCTGGTACCGTGCATTCGTCGCTGCAGGGCTATTGCTTGGTTTTGGAGTTAGTGCTGCTGTGTTTGTCAAGAAATTGCTCCTTCCTAGGCTTAAGTCTTGGATCCGCAAGGTCGTAGCTGAAGGTGATGAAAACGAGGGCAGGCAAATTAAGTCCAAGATCGATGAGGAAACTGCTGAAGCTGTAAAAGCTTCTGCATCTGCTGTT ]
[+] EMBL CF297633 [ CGCTTCGCTTCGATTCGATGGCCACTGGTGACCCAAACCCTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTGAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCCTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTCCCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTATGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATTATTGTTGCCACACAGCCCAAGTTCAGCTGGTACCGTGCATTCGTCGCTGCAGGGCTATTGCTTGGTTTTGGAGTTAGTGCTGCTGTGTTTGTCAAGAAATTGCTCCTTCCTAGGCTTAAGTCTTGGATCCGCAAG ]
[+] EMBL CB619392 [ CTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTGAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCTTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTCCCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTATGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATCATTGTTGCCACACAGCCCAAGTTCAGCTGGTACCGTGCATTCGTCGCTGCAGGGCTATTGCTTGGTTTTGGAGTTAGTGCTGCTGTGTTTGTCAAGAAATTGCTCCTTCCTAGGCTTAAGTCTTGGATCCGCAAGGTCGTAGCTGAAGGTGATGAAAACGAGGGCAGGCAAATTAAGTCCAAGATTGATGAGGAAACTGCTGAAGCTGTAAAAGCTTCTGCATCTGCTGTTTCTGCTATTGCCAAAACTAACCAAGAATTGCTTGCTTCAAAGGATGAAGAAAAGAAGATACTTGTGACATTAACACAAGCACTAGATTCCCAAGCAAAAGAATTGAAATCCTTATGTGAGTCTCTGAACCATAGCAGGGATTCT ]
[+] EMBL CB670830 [ ACCACCACTCCGCCGTCGCAGCAGCTGCA AGATCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGTGAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTCCCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGACGAGGCCTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTCCCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTATGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATTATTGTTGCCACACAGCCCAAGTTCAGCTGGTACCGTGCATTCGTCGCTGCAGGGCTATTGCTTGGTTTTGGAGTTAGTGCTGCTGTGTTTGTCAAGAAATTGCTCCTTCCTAGGCTTAAGTCTTGGATCCGCAAGGTCGTAGCTGAAGGTGATGAAAACGAGGGCAGGCAAATTAAGTCCAAGATCGATGAGGAAACTGCTGAAGCTGTAAAAGCTTCTGCATCTGCTGTTTCTGCTATTGCCAAAACTAACCAAGAATTGCTTGCTTCAAAGGATGAAGAAAAGAAGATACTTGTGACATTAACACAAGCACTAGATTCCCAAGCAAAAGAATTGAAATCCTTATGTGAGTCTCTGAACCATAGCAGGGATTCTATAAATATTACCAGGGAAGATAGGTTTTCTCAGTACCGGGCATTGGAAGAGCATGCCCCT ]
[+] EMBL BF430623 [ AGTCCAAGATTGATGAGGAAACTGCTGAAGCTGTAAAAGCTTCTGCATCTGCTGTTTCTGCTATTGCCAAAACTAACCAAGAATTGCTTGCTTCAAAGGATGAAGAAAAGAAGATACTTGTGACATTAACACAAGCACTAGATTCCCAAGCAAAAGAATTGAAATCCTTATGTGAGTCTCTGAACCATAGCAGGGATTCTATAAATATTACCAGGGAAGATAGGTTTTCTCAGTACCGGGCATTGGAAGAGCATGCCCCTTCTGCTGCAAGGAATGGGCCAGTTAACACTCCATGGAGAGCCTCTCAGCAAACTAATATGTATGGTGTGCCAAACAGTGATTTTGGCTCAGGGAGGCCTTCATTTGCGTCAACACATAATGAAGCTACACCTGGATCATTTTCAAGATCGTACGTTGAGACATCTGCTGCACACCGAGGGGATAATAGGTCTTCAGGGAGTAAGCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTACGGATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGGCT ]
[-] EMBL CB670831 [ CAAGATCGTACGTTGAGACATCTGCTGCACACCGAGGGGATAATAGGTCTTCAGGGAGTAAGCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTATGGATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG CCTCTTCCTGAAGA GGCGCTTGTTAATGGC AGTGACGCCGGACGTAGTGAGATCGAAGA ACAAGCA GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAGCTGTGACTGTGAGTAATACCGATACATTACATTACATTACATACATACA CGGTGATTAAAACAGACAAGCAGACATTTT ]
[-] EMBL CB654123 [ CATCTGCTGCACACCGAGGGGATAATAGGTCTTCAGGGAGTAAGCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTATGGATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG CCTCTTCCTGAAGA GGCGCTTGTTAATGGC AGTGACGCCGGACGTAGTGAGATCGAAGA ACAAGCA GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAGCTGTGACTGTGAGTAATACCGATACATTACATGACATTACATACATACACCGGT ]
[-] EMBL CB619393 [ TCTTCAGGGAGTAAGCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTACGGATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG CCTCTTCCTGAAGA GGCGCTTGTTAATGGC AGTGACGCCGGACGTAGTGAGATCGAAGA ACAAGCA GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAGCTGTGACTGTGAGTAATACCGATACATTACATTACATTACATACATACA CGGTGATTAAAACAAACAAGCAGACATTTTTACTT ]
[-] EMBL CB636064 [ GCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTATGGATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGNTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG CCTCTTCCTGAAGA GGCGCTTGTTAATGGC AGTGACGCCGGACGTAGTGAGATCGAAGA ACAAGCA GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGT ]
[-] EMBL CF297632 [ TGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG CCTCTTCCTGAAGA GGCGCTTGTTAATGGC AGTGGCGCCGGACGTAGTGAGATCGAAGA ACAAGCA GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAaaaaa ]
[-] EMBL CB639700 [ CAGCGCCGTTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGCTGTGGTTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGTTTCTCAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCG CCTCTTCCTGAAGA GGCGCTTGTTAATGGC AGTGACGCCGGACGTAGTGAGATCGAAGA ACAAGCA GAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAGCTGTGACTGTGAGTAATACCGATACATTACATTACATTACATACATACA CGGTGATT ]
[+] EMBL BI805199 [ tTTCGTCGCCCTCTTCCTGAAGAGGGCGCTTGTTAATGGCAAGTGACGCCGGACGTAGTGAGATCGAAGATACAAGCATGAAGCCATCTAGAAACCATTTGTTTTAAATTGGGACGAGATGATGTTGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCGAGTTTATACTAC CTACGTCAAATAAC AGTGTTGCTACTAGCTGTGACTGTGAGTAATACCGATAC TTAC TTACATTACATACATAC CGGTGATTAAAAC AAC AGCAGACATTTTTACTTGGTTATGTTATGACAGGCAGAGATGGCATATGTTAAGGAAGGAT]
consensusID : consensus_14922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[CCCGTCGAAACACGNCCACTCNGCCCNGCAGNNAAACTCTCANTNGAGGATTGGCTACGGATCCAACANCCANTTGAGTGATGACNGATGCCCTNAAACTCNTGACAATTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCGTAATCAGAACGGGAANGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGTCCATCGGTATACATAAGTGGGGCTGANGAAAGGTCGCCTCCGCCTCCGCCTCAGCNCCGCTGGGTTCCCCCACAGCCTCCGGGCNTTGTGATGCCGGAAGCTGTGGCTGCCATCTTTTTTCCTNANTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAACNGGCNCAGACGCATGCCAACGGTGCTTCAAGTTCGTCGCCTCTTCCTGAAGAAGCCTTGTTAATGGCAGTGACGCCNGGACNTACTGAGATCNAAGAACAAGCTGAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAAAAC]
[+] EMBL AA754504 [CCCGTCGAAACACGNCCACTCNGCCCNGCAGNNAAACTCTCANTNGAGGATTGGCTACGGATCCAACANCCANTTGAGTGATGACNGATGCCCTNAAACTCNTGACAATTATGGCGGGGGACCTTCGTATTCGTATCACCAGAATCGTAATCAGAACGGGAANGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAGTCCATCGGTATACATAAGTGGGGCTGANGAAAGGTCGCCTCCGCCTCCGCCTCAGCNCCGCTGGGTTCCCCCACAGCCTCCGGGCNTTGTGATGCCGGAAGCTGTGGCTGCCATCTTTTTTCCTNANTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCAAGAGGCAACNGGCNCAGACGCATGCCAACGGTGCTTCAAGTTCGTCGCCTCTTCCTGAAGAAGCCTTGTTAATGGCAGTGACGCCNGGACNTACTGAGATCNAAGAACAAGCTGAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAAAAC]
consensusID : consensus_14922#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[GCGANACGCATGCCAACGGTGCTTCAAGTTCGTCGCCTCTTCCTGAAAAGGCGCTTGTTAATGGCAGTGACGCCGGACGTAGTGAGATCGAAGAACAAGCAGAAGCCATNTAGAAACAATTTGTTTTAAATTGGGACNANATGATGTTNANAAGCTGGAANATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACANAANATCTCGATTTGTGGTCGAGTTTATACTACNCTACGTCAAATAACAAGTGTTGCTACTANCTGTGACTGTGAGTAATACCGATACATTNCATTCCATTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU166300 [GCGANACGCATGCCAACGGTGCTTCAAGTTCGTCGCCTCTTCCTGAAAAGGCGCTTGTTAATGGCAGTGACGCCGGACGTAGTGAGATCGAAGAACAAGCAGAAGCCATNTAGAAACAATTTGTTTTAAATTGGGACNANATGATGTTNANAAGCTGGAANATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACANAANATCTCGATTTGTGGTCGAGTTTATACTACNCTACGTCAAATAACAAGTGTTGCTACTANCTGTGACTGTGAGTAATACCGATACATTNCATTCCATTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14922#0 AGCAGTGTCTGTGTTTGGCACGTCCACGACAGCACGAGACGGGTTGGGGACTTGGGGGGT 60
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TGAAGAAGCCAAGCTCTCCTTGGTTGGCGCGCACGTACGTTCGCTTCGCTTCGATTCGAT 120
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 GGCCACTGGTGACCCAAACCCTACCACCACTCCGCCGTCGCAGCAGCTGCAAGGAGCAGA 180
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TCCCCAACCCCAATCCCAGCAGGATGCCGCCGCCAACGCCACTCCGGCGGCCGTGGCCGT 240
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 GAGAGAGGATTATGTCCAGAACGCCGTCAAGTTCCTCTCCCACCCCAAGGTCAGGGGCTC 300
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 CCCCGTCCTCTACCGCCGCTCCTTCCTAGAGAAGAAGGGCCTTACCAAGGACGAGATCGA 360
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 CGAGGCCTTCCGACGAGTCCCCGATCCGCAACCCAGCGCTACTGCTACTGCTGCTGCTTC 420
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 CCCTTCGCCTTCACAGCACCCCAACAACCAGAACCACTCTTCTACCGTTGTGCAACCTTA 480
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TGCACCAAGGCAACCAGCAACACCTGCTGGCTCTATTATTGTTGCCACACAGCCCAAGTT 540
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 CAGCTGGTACCGTGCATTCGTCGCTGCAGGGCTATTGCTTGGTTTTGGAGTTAGTGCTGC 600
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TGTGTTTGTCAAGAAATTGCTCCTTCCTAGGCTTAAGTCTTGGATCCGCAAGGTCGTAGC 660
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TGAAGGTGATGAAAACGAGGGCAGGCAAATTAAGTCCAAGATCGATGAGGAAACTGCTGA 720
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 AGCTGTAAAAGCTTCTGCATCTGCTGTTTCTGCTATTGCCAAAACTAACCAAGAATTGCT 780
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TGCTTCAAAGGATGAAGAAAAGAAGATACTTGTGACATTAACACAAGCACTAGATTCCCA 840
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 AGCAAAAGAATTGAAATCCTTATGTGAGTCTCTGAACCATAGCAGGGATTCTATAAATAT 900
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TACCAGGGAAGATAGGTTTTCTCAGTACCGGGCATTGGAAGAGCATGCCCCTTCTGCTGC 960
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 AAGGAATGGGCCAGTTAACACTCCATGGAGAGCCTCTCAGCAAACTAATATGTATGGTGT 1020
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 GCCAAACAGTGATTTTGGCTCAGGGAGGCCTTCATTTGCGTCAACACATAATGAAGCTAC 1080
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 ACCTGGATCATTTTCAAGATCGTACGTTGAGACATCTGCTGCACACCGAGGGGATAATAG 1140
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 GTCTTCAGGGAGTAAGCCATGGGAGATGCAGCAATACTCACAGCAGAGGATTGGCTATGG 1200
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 ATCCAACAGCCAGTTGAGTGATGACGGATGCCCTGAAACTCAGGACAACTATGGCGGGGG 1260
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 ACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATAT 1320
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TCAAGCAGAGGAGGCCAGGCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCC 1380
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 GCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTCCGGGCGTTGTGATGCCGGAAGC 1440
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 TGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCTCA 1500
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 ------------------------------------------------------------
consensus_14922#0 AGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCGCCTCTTCCTGAAGA 1560
consensus_14922#2 -----------GCGANACGCATGCCAACGGTGCTTCAAGTTCGTCGCCTCTTCCTGAAAA 49
consensus_14922#1 -------CCCGTCGAAACACGNCCACTCNGCCCNGCAGNNAAACTCTCANTNGAGGATTG 53
*** ** * * * * * ** * * **
consensus_14922#0 GGCGCTTGTT-AATGGC------AGTGACGCCGGACGTAGTGAGA---TCGAAGAACAAG 1610
consensus_14922#2 GGCGCTTGTT-AATGGC------AGTGACGCCGGACGTAGTGAGA---TCGAAGAACAAG 99
consensus_14922#1 GCTACGGATCCAACANCCANTTGAGTGATGACNGATGCCCTNAAACTCNTGACAATTATG 113
* * * ** * ***** * * ** * * * * ** * * *
consensus_14922#0 CAGAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGAT---GATGTTGAGAAGCT 1667
consensus_14922#2 CAGAAGCCATNTAGAAACAATTTGTTTTAAATTGGGACNANAT---GATGTTNANAAGCT 156
consensus_14922#1 GCGGGGGACCTTCGTATTCGTATCACCAGAATCGTAATCAGAACGGGAANGCTCCGGCTC 173
* * * * * * * *** * * * * **
consensus_14922#0 GGAATATGTATTTATTTTGGATCAGTACG--GGAACGCCTA--CTGTGGTAACAGAAGAT 1723
consensus_14922#2 GGAANATGTATTTATTTTGGATCAGTACG--GGAACGCCTA--CTGTGGTAACANAANAT 212
consensus_14922#1 CGGATATTCAAGCAGAGGAGGCCAGTCCATCGGTATACATAAGTGGGGCTGANGAAAGGT 233
* * ** * * * **** * ** * * ** * * * * ** *
consensus_14922#0 C---TCGATTTGTGGTCGAGTTTATACTACACTACGTCAAA--TAACAAGTGTTGCTACT 1778
consensus_14922#2 C---TCGATTTGTGGTCGAGTTTATACTACNCTACGTCAAA--TAACAAGTGTTGCTACT 267
consensus_14922#1 CGCCTCCGCCTCCGCCTCAGCNC-CGCTGGGTTCCCCCACAGCCTCCGGGCNTTGTGA-T 291
* ** * * ** ** * * ** * * * *** * *
consensus_14922#0 AGCTGTGACTGTGAGTAATACCGATACATTACATTACATTACATACATACACGGTGATTA 1838
consensus_14922#2 ANCTGTGACTGTGAGTAATACCGATACATTNCATTCCATTAAAAAAAAAAAAAAAAAAAA 327
consensus_14922#1 GCCGGAAGCTGTGGCTGCCATCTTTTTTCCTNANTCCCTCGCAAAGCAACCGTCGAGCGA 351
* * ***** * * * * * * * * * * * *
consensus_14922#0 AA------ACAAACAAGCAGACATTTTTACTTGGTTATGTTATGACAGGCAGAGATGGCA 1892
consensus_14922#2 AA------AAAAA----------------------------------------------- 334
consensus_14922#1 AGCTTCTCAAGAGGCAACNGGCNCAGACGCATGCCAACGGTGCTTCAAGTTCGTCGCCTC 411
* * *
consensus_14922#0 TATGTTAAGGAAGGAT-------------------------------------------- 1908
consensus_14922#2 ------------------------------------------------------------
consensus_14922#1 TTCCTGAAGAAGCCTTGTTAATGGCAGTGACGCCNGGACNTACTGAGATCNAAGAACAAG 471
consensus_14922#0 -------------------------------------------------------
consensus_14922#2 -------------------------------------------------------
consensus_14922#1 CTGAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGTTGAAAAC 526
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||