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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 591 fasta sequence
[CGACGCAGTGCCACTGGTGTTATCGCACTAAAGGGAATAGCTTGCCG-TC-CCACTTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC-TACTTTG-TTTGGCGGGCACCACTTTCTCTCT-GTTTCAA-ACT-ATTCG-CCAGACGGCCATG-AAAGG-ACGCTTACCTTG-AAG-AAGCGGTTTTCAG-A-AG-AGCAGAT-CATCGG-TTTTTTG-CAG-CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA-TGGTGAT]
[+] EMBL CB965807 [CGACGCAGTGCCACTGGTGTTATCGCACTAAAGGGAATACCTTGGCG TA CCACTTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL BI306325 [ aTTAACCCTCCTAAGGGAATAGCTTGCCG CC GCCCTTGAACA CATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL BU673236 [ AGGGAATAGCTTGCCGCTG CCACTTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL BU673591 [ AGGGAATAGCTTGCCG T GCACTTGAACACCATGTTCGTGTTCAGCCCGTA CGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCCG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL BU673298 [ AATAGC TG CG TT ACACTTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL BI305979 [ tataAGCTTGCCG CCGCCACTTGAACA CATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTGTC ]
[+] EMBL BI305585 [ CG CC GCCCTTGAACA CATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL BI306461 [ TTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL CB964480 [ TTGAACACCATG TCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL BU672924 [ TTGAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCATTGGTGAT]
[+] EMBL CB966256 [ GAACACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGGCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL CB967018 [ CACCATGTTCGTGTTCAG CCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL CB966596 [ CACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGG TTTCAG A AG AGCAGAT CATCGGCTTTCTCG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCC ]
[+] EMBL CB965831 [ ACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGCATACTTTGTTTTGGCGGGCACCACTTTCTCTCTNGTTTCAACACTCATTCGCCCACACGGCCATGCAAAGGCACGCTTACCTTGCAAGCAAGCGGTTTTCAGCACAGCAGCAGATCCATCGG TTTTTTGCCAGCCAGGCGGAAG ]
[+] EMBL CB965101 [ ACCATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATT ]
[+] EMBL BI306713 [ CATGTTCGTGTTCAGCCCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[+] EMBL CB964539 [ CATG TCGTG TCAG CCGTACCGCAGCGCTAGCTTCGCCACCGACACCCCGGGCTCGCAAGCTTCCACGGCCAATCGGCGCTTGAATTCAAGCGGATAATTCGGCCGGCCACGCCGTCCGCCGCTAACAACCTCTGCTGTCTCCAAAATGATCCCCGC TACTTTG TTTGGCGGGCACCACTTTCTCTCT GTTTCAA ACT ATTCG CCAGACGGCCATG AAAGG ACGCTTACCTTG AAG AAGCGGTTTTCAG A AG AGCAGAT CATCGG TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAAGCCGAGAACGCCAAGCTCAAACGCCTACTGGCCGAATCGATCCTTGATGCCGAAGCTCTCAAAGCGGCCTTGGGCCGAAAGCGCTGAGCCCCCAGCAAAAGCGTGAGTCAGTCA TGGTGAT]
[-] EMBL BU672798 [ TTTTTTG CAG CAGGCGGAAGCCGGCGTGGCGATCAAGGAACTGTGCCGGCAACACGGCTTCAGTGACGCCTCGTTCTACAACTGGCGGGCGAAATTCGGCGGCATGTCAGTTCCGGATGCGAAGCGCCTGAAGGAACTGGAA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||