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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 522 fasta sequence
[CCACACCAGTTACCCTCAATAGAAACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGG-TGGTTGCGGTA-GTACG-AGCCACCG-AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT-GGAGCAATTCAGCGCTTTGTG-CAATGAGGGGTG-TAG-CAAAGAATTTAAGGAGGATCCTG-CCACCAACAAGAAGTGCGTAGA-CAGTTGCATCGTCGATGC-TAA-GGAACTCAAT-GGACACTTAGCG-AAAGG-TGGCGCTTCTAGTGTTCCCGCACGTGCATGA-TTG-TGTCGAGCTGCACATCTGTT-CCTTCAT-CCAT-GAT-CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL AK064756 [CCACACCAGTTACCCTCAATAGAAACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGGAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL C99017 [ CCCTCAATAGAAACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAAGGGAACTCAAT GGACACTTAGCG AAAGGTTGGCGCTTCTAGTGTTNCCGNACGTGCATGA TTGTTNTCGAGCTGCACATTTGTT CCTTTAT CC ]
[+] EMBL AU094325 [ CCTCAATAGAAACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTAaaaaa ]
[+] EMBL AU094214 [ CAATAGAAACGGTGCTAATGGCCCAGACCAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGCCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL C73288 [ CAATAGAAACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTNNTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGACCAGTTGCATCGTCGATGCTTAA GGAACTCAAT GGACACTTAGCG AAAGGTTGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TTTCGAGCTTCACATCTGTT NCCTCATNCCAT GA ]
[+] EMBL C73261 [ AAACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCANCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATNAGGGGTG TAG CAAAGANTTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGATTTG TTTCGAGCTGCACATCTGTT CCTTCATn ]
[+] EMBL AU063813 [ AACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTGNTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGAT C TAA GG ACTCAAT GGACACTTAGCG AAAGG TGGCG TTCTAGTGTTCCCG ACGTTCATGA T ]
[+] EMBL AU064080 [ AACGGTGCTAATGGCCCAGAACAAGACCATGGCTCTNNTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATTC TAANGGACCTCAAT GGACACTTNGCG AAAGG TGGCGNTTCTAGTGT ]
[+] EMBL C99008 [ GGTGCTAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGNGGTTGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTACATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGCTTAA GGAACTCAAT GGACACTTAGCG AAAGGTTGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTNCACATCTGTT TCTTCATNCCAT GATCCGAGGGA ]
[+] EMBL AU165699 [ GTGCTAATGGCCCAGACCAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGNCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTACATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL C73468 [ CTAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAATGGGACACTTAGCGAAAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATNTGTTCCCTTCAT CCAT GAT CGAGGGNCGGTAac ]
[+] EMBL AU101281 [ TAATGGCCCAGAACAAGACCATGGCTCTGCTCCTTGCCACCCTTGTGNCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL C73249 [ GGCTCTGCTCCTTGCCACCCTTGTGGCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGGCACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGNACGTGCATGA TTG TTTCGAGCTGCAAATCTGTT CCTTCAT CCATGGTT CGNGGGGCGGTACCCATTAATNGTTCCCACCCAG ]
[+] EMBL AU094168 [ GCTCTGCTCCTTGCCACCCTTGTGNCGG TGGTTGCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL AU165374 [ TTGCCACCCTTGTGGCGG TGGTTCCGGTA GTNCG ANCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL AU094231 [ CCACCCTTGTGCCGG TGGTTNCGGTA GTACG AGCCACCG AAGAGAAGGATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGANAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL AU094178 [ TTGTGCCGG TGGTTNCGGTAGGTACGAAGCCCCCGAAAGAGAA GATATAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGAGAGGAATGAAGCCCTCGAT GGAGCAATTCAGCGCTTTGTG CAATGAGGGGTG TAG CAAAGAATTTAAGGAGGATCCTG CCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
[+] EMBL C99124 [ ggaaaAGAGGAATGAACCCCTCGATGGGAGCAATNCNGCGCTTTGTGCCAATGAGGGGTGTTAGCCAAAG ATTTAAGGAGGATCCTGCCCACCAACAAGAAGTGCGTAGA CAGTTGCATCGTCGATGC TAA GGAACTCAAT GGACACTTAGCG AAAGG TGGCGCTTCTAGTGTTCCCGCACGTGCATGA TTG TGTCGAGCTGCACATCTGTT CCTTCAT CCAT GAT CGAGGGACGATACCCATTAATGGTTCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC]
consensusID : consensus_14926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[TCAATAGAAACGGTGCTAATGGCCCAGAACAAGAACCATGGCTCTGCTCCTTGCCACCCCTTGTGGCGGTGGTTGCGGTAGTACGAGCCACCGAAGAGAAGGATATAGAAGAGCTGTGTGCTCAGAGCATTGCAACGACGAGGGAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCTCACGACANGGACTTTTTGGGCCTTGGAGAGAGGATGAGCCTCGTNGAGCATTCAGCGCTTTTGCATGAGGGTTAGCAAGATTAAGAGGTCTGCACCACAAGATGCGAAACAGTTCACGCGTCTAAGATCATGGCCTTACGAAGTG]
[+] EMBL AU094345 [TCAATAGAAACGGTGCTAATGGCCCAGAACAAGAACCATGGCTCTGCTCCTTGCCACCCCTTGTGGCGGTGGTTGCGGTAGTACGAGCCACCGAAGAGAAGGATATAGAAGAGCTGTGTGCTCAGAGCATTGCAACGACGAGGGAAAAGAAGGCACCATCGACCACAAGCACTGTGTAGACATCTGCATCTCACGACANGGACTTTTTGGGCCTTGGAGAGAGGATGAGCCTCGTNGAGCATTCAGCGCTTTTGCATGAGGGTTAGCAAGATTAAGAGGTCTGCACCACAAGATGCGAAACAGTTCACGCGTCTAAGATCATGGCCTTACGAAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14926#0 CCACACCAGTTACCCTCAATAGAAACGGTGCTAATGGCCCAGAACAAGA-CCATGGCTCT 59
consensus_14926#1 ---------------TCAATAGAAACGGTGCTAATGGCCCAGAACAAGAACCATGGCTCT 45
********************************** **********
consensus_14926#0 GCTCCTTGCCACCC-TTGTGGCGGTGGTTGCGGTAGTACGAGCCACCGAAGAGAAGGATA 118
consensus_14926#1 GCTCCTTGCCACCCCTTGTGGCGGTGGTTGCGGTAGTACGAGCCACCGAAGAGAAGGATA 105
************** *********************************************
consensus_14926#0 TAGAAGAAGCTGTGTGCTCAGAGCATTGCAACGACGAGGAAAAAGAAGGCACCATCGACC 178
consensus_14926#1 TAGAAGA-GCTGTGTGCTCAGAGCATTGCAACGACGAGGGAAAAGAAGGCACCATCGACC 164
******* ******************************* ********************
consensus_14926#0 ACAAGCACTGTGTAGACATCTGCATCCTCACGAACAGGGAACTTTTTGGGGCCTTGGAGA 238
consensus_14926#1 ACAAGCACTGTGTAGACATCTGCATC-TCACGA-CANGGACTTTTT--GGGCCTTGGAGA 220
************************** ****** ** *** **** ************
consensus_14926#0 GAGGAATGAAGCCCTCGATGGAGCAATTCAGCGCTTTGTGCAATGAGGGGTGTAGCAAAG 298
consensus_14926#1 GAGGA-TGAG--CCTCG-TNGAGCA-TTCAGCGCTTT-TGCA-TGAGGGTT--AGCAAGA 271
***** *** ***** * ***** *********** **** ****** * *****
consensus_14926#0 AATTTAAGGAGGATCCTGCCACCAACAAGAAGTGCGTAGACAGTTGCATCGTCGATGCTA 358
consensus_14926#1 ---TTAAGAGG---TCTGC-ACCA-CAAGATGCG---AAACAGTTCACGCGTCTAAGATC 320
***** * **** **** ***** * * * ****** **** * * *
consensus_14926#0 AGGAACTCAATGGACACTTAGCGAAAGGTGGCGCTTCTAGTGTTCCCGCACGTGCATGAT 418
consensus_14926#1 ATGGCCTTACGAAGTG-------------------------------------------- 336
* * ** *
consensus_14926#0 TGTGTCGAGCTGCACATCTGTTCCTTCATCCATGATCGAGGGACGATACCCATTAATGGT 478
consensus_14926#1 ------------------------------------------------------------
consensus_14926#0 TCCCACCCAGCGGTCGGCCTTGTATTACATTGTCCTGTTGTTCC 522
consensus_14926#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||